EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000004743 (Gene tree)
Gene ID: 108260795
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 35436 bases
Position: chr29:4023045-4058480
Accession: 108260795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000006870	RRM_1	PF00076.22	1.1e-39	1	3
ENSIPUP00000006870	RRM_1	PF00076.22	1.1e-39	2	3
ENSIPUP00000006870	RRM_1	PF00076.22	1.1e-39	3	3
ENSIPUP00000006900	RRM_1	PF00076.22	1.3e-39	1	3
ENSIPUP00000006900	RRM_1	PF00076.22	1.3e-39	2	3
ENSIPUP00000006900	RRM_1	PF00076.22	1.3e-39	3	3
ENSIPUP00000006858	RRM_1	PF00076.22	1.5e-39	1	3
ENSIPUP00000006858	RRM_1	PF00076.22	1.5e-39	2	3
ENSIPUP00000006858	RRM_1	PF00076.22	1.5e-39	3	3
ENSIPUP00000006848	RRM_1	PF00076.22	1.8e-39	1	3
ENSIPUP00000006848	RRM_1	PF00076.22	1.8e-39	2	3
ENSIPUP00000006848	RRM_1	PF00076.22	1.8e-39	3	3
ENSIPUP00000006878	RRM_1	PF00076.22	1.8e-39	1	3
ENSIPUP00000006878	RRM_1	PF00076.22	1.8e-39	2	3
ENSIPUP00000006878	RRM_1	PF00076.22	1.8e-39	3	3
ENSIPUP00000006886	RRM_1	PF00076.22	1.8e-39	1	3
ENSIPUP00000006886	RRM_1	PF00076.22	1.8e-39	2	3
ENSIPUP00000006886	RRM_1	PF00076.22	1.8e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000007187	-	2706	XM_017461378	ENSIPUP00000006886	625 (aa)	XP_017316867	A0A2D0QHC5
ENSIPUT00000007179	-	2384	XM_017461377	ENSIPUP00000006878	625 (aa)	XP_017316866	A0A2D0QHC5
ENSIPUT00000007201	-	1740	XM_017461386	ENSIPUP00000006900	579 (aa)	XP_017316875	-
ENSIPUT00000007159	-	2798	XM_017461382	ENSIPUP00000006858	600 (aa)	XP_017316871	A0A2D0QEY4
ENSIPUT00000007148	-	4555	XM_017461376	ENSIPUP00000006848	625 (aa)	XP_017316865	A0A2D0QHC5
ENSIPUT00000007170	-	2666	XM_017461385	ENSIPUP00000006870	556 (aa)	XP_017316874	A0A2D0QF02

Gene Model

Click here to download ENSIPUG00000004743's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004743's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000004743	rbm47	80	51.412	ENSIPUG00000010367	a1cf	97	52.381
ENSIPUG00000004743	rbm47	53	54.485	ENSIPUG00000005704	syncripl	77	46.117
ENSIPUG00000004743	rbm47	53	54.485	ENSIPUG00000015632	syncrip	62	49.337
ENSIPUG00000004743	rbm47	55	54.870	ENSIPUG00000008272	hnrnpr	69	45.125
ENSIPUG00000004743	rbm47	52	66.319	ENSIPUG00000024038	rbm46	60	68.792

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004743	rbm47	97	84.659	ENSG00000163694	RBM47	100	84.332	Homo_sapiens
ENSIPUG00000004743	rbm47	100	83.697	ENSAPOG00000011062	rbm47	100	87.436	Acanthochromis_polyacanthus
ENSIPUG00000004743	rbm47	97	77.257	ENSAMEG00000009672	RBM47	100	76.667	Ailuropoda_melanoleuca
ENSIPUG00000004743	rbm47	100	84.797	ENSACIG00000011531	rbm47	100	85.473	Amphilophus_citrinellus
ENSIPUG00000004743	rbm47	100	87.724	ENSAOCG00000022245	rbm47	100	87.724	Amphiprion_ocellaris
ENSIPUG00000004743	rbm47	100	87.724	ENSAPEG00000018304	rbm47	100	87.724	Amphiprion_percula
ENSIPUG00000004743	rbm47	100	84.893	ENSATEG00000018400	rbm47	100	84.236	Anabas_testudineus
ENSIPUG00000004743	rbm47	100	75.879	ENSAPLG00000013974	RBM47	100	76.589	Anas_platyrhynchos
ENSIPUG00000004743	rbm47	100	75.914	ENSACAG00000011833	RBM47	100	75.748	Anolis_carolinensis
ENSIPUG00000004743	rbm47	100	81.551	ENSANAG00000029440	RBM47	100	80.829	Aotus_nancymaae
ENSIPUG00000004743	rbm47	100	88.402	ENSACLG00000016902	rbm47	100	88.402	Astatotilapia_calliptera
ENSIPUG00000004743	rbm47	100	88.245	ENSAMXG00000021794	rbm47	100	88.079	Astyanax_mexicanus
ENSIPUG00000004743	rbm47	100	76.975	ENSBTAG00000002356	RBM47	100	77.983	Bos_taurus
ENSIPUG00000004743	rbm47	97	85.143	ENSCJAG00000019385	RBM47	100	81.347	Callithrix_jacchus
ENSIPUG00000004743	rbm47	97	77.408	ENSCAFG00000015898	RBM47	100	76.884	Canis_familiaris
ENSIPUG00000004743	rbm47	83	82.720	ENSCAFG00020010558	RBM47	94	80.637	Canis_lupus_dingo
ENSIPUG00000004743	rbm47	100	76.975	ENSCHIG00000026214	RBM47	100	77.983	Capra_hircus
ENSIPUG00000004743	rbm47	87	86.099	ENSTSYG00000033612	RBM47	74	88.128	Carlito_syrichta
ENSIPUG00000004743	rbm47	100	73.529	ENSCAPG00000008426	RBM47	100	72.280	Cavia_aperea
ENSIPUG00000004743	rbm47	100	80.800	ENSCPOG00000014100	RBM47	100	80.620	Cavia_porcellus
ENSIPUG00000004743	rbm47	100	82.620	ENSCCAG00000030129	-	100	80.829	Cebus_capucinus
ENSIPUG00000004743	rbm47	99	53.794	ENSCCAG00000024397	-	99	53.963	Cebus_capucinus
ENSIPUG00000004743	rbm47	97	84.659	ENSCATG00000042064	RBM47	100	80.829	Cercocebus_atys
ENSIPUG00000004743	rbm47	100	80.371	ENSCLAG00000001684	RBM47	100	80.103	Chinchilla_lanigera
ENSIPUG00000004743	rbm47	97	78.534	ENSCSAG00000017060	RBM47	100	77.554	Chlorocebus_sabaeus
ENSIPUG00000004743	rbm47	86	77.512	ENSCHOG00000011731	RBM47	88	76.543	Choloepus_hoffmanni
ENSIPUG00000004743	rbm47	100	79.967	ENSCPBG00000013831	RBM47	100	79.700	Chrysemys_picta_bellii
ENSIPUG00000004743	rbm47	97	84.659	ENSCANG00000019997	RBM47	100	80.829	Colobus_angolensis_palliatus
ENSIPUG00000004743	rbm47	100	80.319	ENSCGRG00001000623	-	100	79.639	Cricetulus_griseus_chok1gshd
ENSIPUG00000004743	rbm47	100	75.066	ENSCGRG00001020102	-	100	76.658	Cricetulus_griseus_chok1gshd
ENSIPUG00000004743	rbm47	97	78.470	ENSCGRG00000014760	-	98	77.929	Cricetulus_griseus_crigri
ENSIPUG00000004743	rbm47	100	74.000	ENSCGRG00000007762	-	100	79.747	Cricetulus_griseus_crigri
ENSIPUG00000004743	rbm47	100	81.450	ENSCSEG00000004545	rbm47	100	81.956	Cynoglossus_semilaevis
ENSIPUG00000004743	rbm47	97	92.090	ENSCVAG00000020144	rbm47	100	87.949	Cyprinodon_variegatus
ENSIPUG00000004743	rbm47	100	89.221	ENSDARG00000061985	rbm47	100	89.221	Danio_rerio
ENSIPUG00000004743	rbm47	97	79.365	ENSDNOG00000046854	RBM47	100	78.680	Dasypus_novemcinctus
ENSIPUG00000004743	rbm47	100	76.539	ENSDORG00000010144	Rbm47	100	77.205	Dipodomys_ordii
ENSIPUG00000004743	rbm47	97	78.087	ENSETEG00000009194	RBM47	100	77.258	Echinops_telfairi
ENSIPUG00000004743	rbm47	99	58.765	ENSEBUG00000011912	rbm47	99	59.060	Eptatretus_burgeri
ENSIPUG00000004743	rbm47	97	78.984	ENSEASG00005008443	RBM47	100	78.151	Equus_asinus_asinus
ENSIPUG00000004743	rbm47	97	78.984	ENSECAG00000004400	RBM47	100	78.151	Equus_caballus
ENSIPUG00000004743	rbm47	72	88.350	ENSEEUG00000001194	RBM47	75	83.983	Erinaceus_europaeus
ENSIPUG00000004743	rbm47	96	84.772	ENSELUG00000006148	rbm47	100	84.848	Esox_lucius
ENSIPUG00000004743	rbm47	97	79.438	ENSFCAG00000012399	RBM47	100	78.415	Felis_catus
ENSIPUG00000004743	rbm47	100	78.930	ENSFALG00000002861	RBM47	100	79.431	Ficedula_albicollis
ENSIPUG00000004743	rbm47	100	79.733	ENSFDAG00000016326	RBM47	100	78.295	Fukomys_damarensis
ENSIPUG00000004743	rbm47	100	84.524	ENSFHEG00000007938	rbm47	100	83.503	Fundulus_heteroclitus
ENSIPUG00000004743	rbm47	96	85.279	ENSGMOG00000014802	rbm47	100	78.964	Gadus_morhua
ENSIPUG00000004743	rbm47	69	81.443	ENSGALG00000014267	RBM47	100	84.169	Gallus_gallus
ENSIPUG00000004743	rbm47	69	84.974	ENSGAFG00000020571	rbm47	98	88.649	Gambusia_affinis
ENSIPUG00000004743	rbm47	100	81.579	ENSGACG00000016223	rbm47	100	85.604	Gasterosteus_aculeatus
ENSIPUG00000004743	rbm47	100	79.967	ENSGAGG00000020051	RBM47	100	79.700	Gopherus_agassizii
ENSIPUG00000004743	rbm47	97	84.659	ENSGGOG00000001367	RBM47	100	80.829	Gorilla_gorilla
ENSIPUG00000004743	rbm47	100	88.402	ENSHBUG00000003520	rbm47	100	88.402	Haplochromis_burtoni
ENSIPUG00000004743	rbm47	100	57.651	ENSHGLG00000016914	RBM47	100	79.114	Heterocephalus_glaber_female
ENSIPUG00000004743	rbm47	100	81.067	ENSHGLG00100014028	-	100	79.587	Heterocephalus_glaber_male
ENSIPUG00000004743	rbm47	100	68.571	ENSHGLG00100003071	-	100	68.571	Heterocephalus_glaber_male
ENSIPUG00000004743	rbm47	99	86.375	ENSHCOG00000002074	rbm47	99	86.375	Hippocampus_comes
ENSIPUG00000004743	rbm47	100	80.637	ENSSTOG00000004727	RBM47	100	80.362	Ictidomys_tridecemlineatus
ENSIPUG00000004743	rbm47	97	78.571	ENSJJAG00000013823	Rbm47	100	77.205	Jaculus_jaculus
ENSIPUG00000004743	rbm47	100	83.779	ENSKMAG00000000084	rbm47	100	87.212	Kryptolebias_marmoratus
ENSIPUG00000004743	rbm47	100	83.980	ENSLBEG00000008436	rbm47	99	87.404	Labrus_bergylta
ENSIPUG00000004743	rbm47	96	83.420	ENSLACG00000007196	RBM47	100	78.992	Latimeria_chalumnae
ENSIPUG00000004743	rbm47	97	87.125	ENSLOCG00000012966	rbm47	95	84.772	Lepisosteus_oculatus
ENSIPUG00000004743	rbm47	100	77.211	ENSLAFG00000011998	RBM47	100	78.061	Loxodonta_africana
ENSIPUG00000004743	rbm47	97	84.659	ENSMFAG00000037967	RBM47	100	80.829	Macaca_fascicularis
ENSIPUG00000004743	rbm47	97	78.534	ENSMMUG00000012036	RBM47	100	82.383	Macaca_mulatta
ENSIPUG00000004743	rbm47	97	84.659	ENSMNEG00000040774	RBM47	100	80.829	Macaca_nemestrina
ENSIPUG00000004743	rbm47	97	87.973	ENSMLEG00000041432	RBM47	100	85.079	Mandrillus_leucophaeus
ENSIPUG00000004743	rbm47	100	83.251	ENSMAMG00000019143	rbm47	99	86.154	Mastacembelus_armatus
ENSIPUG00000004743	rbm47	100	88.402	ENSMZEG00005023659	rbm47	100	88.402	Maylandia_zebra
ENSIPUG00000004743	rbm47	100	78.203	ENSMGAG00000012226	RBM47	100	78.275	Meleagris_gallopavo
ENSIPUG00000004743	rbm47	100	80.637	ENSMAUG00000006493	Rbm47	100	80.380	Mesocricetus_auratus
ENSIPUG00000004743	rbm47	100	79.088	ENSMICG00000026417	RBM47	100	81.233	Microcebus_murinus
ENSIPUG00000004743	rbm47	100	80.319	ENSMOCG00000021170	Rbm47	100	79.897	Microtus_ochrogaster
ENSIPUG00000004743	rbm47	100	84.185	ENSMMOG00000007260	rbm47	100	83.526	Mola_mola
ENSIPUG00000004743	rbm47	100	79.599	ENSMODG00000007003	RBM47	100	79.599	Monodelphis_domestica
ENSIPUG00000004743	rbm47	56	77.603	ENSMODG00000015426	-	99	77.603	Monodelphis_domestica
ENSIPUG00000004743	rbm47	100	74.055	ENSMODG00000020561	-	99	75.086	Monodelphis_domestica
ENSIPUG00000004743	rbm47	100	84.864	ENSMALG00000005167	rbm47	100	87.113	Monopterus_albus
ENSIPUG00000004743	rbm47	100	81.383	MGP_CAROLIEiJ_G0027258	Rbm47	100	82.447	Mus_caroli
ENSIPUG00000004743	rbm47	100	81.649	ENSMUSG00000070780	Rbm47	100	82.713	Mus_musculus
ENSIPUG00000004743	rbm47	100	81.383	MGP_PahariEiJ_G0017040	Rbm47	100	82.447	Mus_pahari
ENSIPUG00000004743	rbm47	100	81.649	MGP_SPRETEiJ_G0028253	Rbm47	100	82.713	Mus_spretus
ENSIPUG00000004743	rbm47	97	78.010	ENSMPUG00000006177	RBM47	94	77.219	Mustela_putorius_furo
ENSIPUG00000004743	rbm47	100	76.303	ENSMLUG00000000889	RBM47	100	76.807	Myotis_lucifugus
ENSIPUG00000004743	rbm47	100	75.793	ENSNGAG00000003325	Rbm47	100	76.461	Nannospalax_galili
ENSIPUG00000004743	rbm47	100	82.573	ENSNBRG00000015092	rbm47	100	83.225	Neolamprologus_brichardi
ENSIPUG00000004743	rbm47	97	84.659	ENSNLEG00000017151	RBM47	100	80.829	Nomascus_leucogenys
ENSIPUG00000004743	rbm47	72	80.952	ENSMEUG00000009516	-	99	80.189	Notamacropus_eugenii
ENSIPUG00000004743	rbm47	82	84.583	ENSOPRG00000016507	-	75	84.583	Ochotona_princeps
ENSIPUG00000004743	rbm47	100	75.630	ENSODEG00000004873	RBM47	100	76.807	Octodon_degus
ENSIPUG00000004743	rbm47	100	83.633	ENSONIG00000009061	rbm47	100	82.979	Oreochromis_niloticus
ENSIPUG00000004743	rbm47	100	77.852	ENSOANG00000008978	RBM47	100	78.607	Ornithorhynchus_anatinus
ENSIPUG00000004743	rbm47	100	76.807	ENSOCUG00000012034	RBM47	100	77.815	Oryctolagus_cuniculus
ENSIPUG00000004743	rbm47	100	87.147	ENSORLG00000005847	rbm47	100	87.147	Oryzias_latipes
ENSIPUG00000004743	rbm47	100	87.147	ENSORLG00020005154	rbm47	100	87.147	Oryzias_latipes_hni
ENSIPUG00000004743	rbm47	100	87.147	ENSORLG00015000066	rbm47	100	87.147	Oryzias_latipes_hsok
ENSIPUG00000004743	rbm47	100	85.110	ENSOMEG00000010730	rbm47	100	84.095	Oryzias_melastigma
ENSIPUG00000004743	rbm47	100	70.658	ENSOGAG00000025193	-	100	73.019	Otolemur_garnettii
ENSIPUG00000004743	rbm47	97	78.534	ENSOGAG00000029367	-	100	77.219	Otolemur_garnettii
ENSIPUG00000004743	rbm47	100	68.739	ENSOARG00000012711	RBM47	100	70.084	Ovis_aries
ENSIPUG00000004743	rbm47	97	79.189	ENSPPAG00000029763	RBM47	100	78.173	Pan_paniscus
ENSIPUG00000004743	rbm47	97	83.380	ENSPPRG00000012873	RBM47	100	82.133	Panthera_pardus
ENSIPUG00000004743	rbm47	86	76.248	ENSPTIG00000017046	RBM47	100	76.447	Panthera_tigris_altaica
ENSIPUG00000004743	rbm47	97	84.659	ENSPTRG00000016006	RBM47	100	80.829	Pan_troglodytes
ENSIPUG00000004743	rbm47	97	84.659	ENSPANG00000005980	RBM47	100	80.829	Papio_anubis
ENSIPUG00000004743	rbm47	100	77.436	ENSPKIG00000013431	RBM47	98	85.013	Paramormyrops_kingsleyae
ENSIPUG00000004743	rbm47	97	90.517	ENSPKIG00000005037	rbm47	100	79.568	Paramormyrops_kingsleyae
ENSIPUG00000004743	rbm47	89	80.189	ENSPSIG00000017516	RBM47	97	80.263	Pelodiscus_sinensis
ENSIPUG00000004743	rbm47	100	82.513	ENSPMGG00000018540	rbm47	100	83.022	Periophthalmus_magnuspinnatus
ENSIPUG00000004743	rbm47	100	80.053	ENSPEMG00000011088	Rbm47	100	79.639	Peromyscus_maniculatus_bairdii
ENSIPUG00000004743	rbm47	100	81.818	ENSPFOG00000007997	rbm47	100	81.331	Poecilia_formosa
ENSIPUG00000004743	rbm47	100	81.789	ENSPLAG00000002072	rbm47	100	88.618	Poecilia_latipinna
ENSIPUG00000004743	rbm47	100	83.838	ENSPMEG00000017492	rbm47	100	86.410	Poecilia_mexicana
ENSIPUG00000004743	rbm47	100	82.439	ENSPREG00000008456	rbm47	100	89.160	Poecilia_reticulata
ENSIPUG00000004743	rbm47	99	67.797	ENSPPYG00000014688	RBM47	98	68.631	Pongo_abelii
ENSIPUG00000004743	rbm47	84	79.328	ENSPCAG00000011879	RBM47	81	81.955	Procavia_capensis
ENSIPUG00000004743	rbm47	97	82.436	ENSPCOG00000023451	RBM47	100	80.749	Propithecus_coquereli
ENSIPUG00000004743	rbm47	100	76.923	ENSPVAG00000003812	RBM47	100	77.258	Pteropus_vampyrus
ENSIPUG00000004743	rbm47	100	82.305	ENSPNYG00000022868	rbm47	100	82.792	Pundamilia_nyererei
ENSIPUG00000004743	rbm47	100	90.563	ENSPNAG00000007940	rbm47	100	90.563	Pygocentrus_nattereri
ENSIPUG00000004743	rbm47	100	76.047	ENSRNOG00000002408	Rbm47	100	77.387	Rattus_norvegicus
ENSIPUG00000004743	rbm47	97	84.659	ENSRBIG00000039601	RBM47	100	80.829	Rhinopithecus_bieti
ENSIPUG00000004743	rbm47	97	84.659	ENSRROG00000044696	RBM47	100	80.829	Rhinopithecus_roxellana
ENSIPUG00000004743	rbm47	100	75.042	ENSSBOG00000028475	RBM47	100	78.969	Saimiri_boliviensis_boliviensis
ENSIPUG00000004743	rbm47	100	79.966	ENSSHAG00000017576	RBM47	100	80.135	Sarcophilus_harrisii
ENSIPUG00000004743	rbm47	100	79.734	ENSSFOG00015012445	rbm47	100	79.734	Scleropages_formosus
ENSIPUG00000004743	rbm47	97	81.690	ENSSFOG00015024101	RBM47	100	78.992	Scleropages_formosus
ENSIPUG00000004743	rbm47	100	86.118	ENSSMAG00000009744	rbm47	100	86.118	Scophthalmus_maximus
ENSIPUG00000004743	rbm47	100	84.680	ENSSDUG00000022684	rbm47	100	84.007	Seriola_dumerili
ENSIPUG00000004743	rbm47	100	85.932	ENSSLDG00000003109	rbm47	100	86.294	Seriola_lalandi_dorsalis
ENSIPUG00000004743	rbm47	85	78.795	ENSSARG00000001735	RBM47	75	79.911	Sorex_araneus
ENSIPUG00000004743	rbm47	100	82.979	ENSSPUG00000007515	RBM47	100	83.422	Sphenodon_punctatus
ENSIPUG00000004743	rbm47	100	87.949	ENSSPAG00000001257	rbm47	100	87.949	Stegastes_partitus
ENSIPUG00000004743	rbm47	97	83.616	ENSSSCG00000008796	RBM47	100	77.983	Sus_scrofa
ENSIPUG00000004743	rbm47	100	78.559	ENSTGUG00000008705	RBM47	100	79.062	Taeniopygia_guttata
ENSIPUG00000004743	rbm47	100	84.048	ENSTRUG00000014050	rbm47	100	83.533	Takifugu_rubripes
ENSIPUG00000004743	rbm47	100	83.003	ENSTNIG00000006127	rbm47	100	82.673	Tetraodon_nigroviridis
ENSIPUG00000004743	rbm47	78	82.203	ENSTBEG00000001607	RBM47	76	79.947	Tupaia_belangeri
ENSIPUG00000004743	rbm47	97	79.262	ENSTTRG00000002839	RBM47	100	77.909	Tursiops_truncatus
ENSIPUG00000004743	rbm47	97	78.534	ENSUAMG00000021346	RBM47	100	77.554	Ursus_americanus
ENSIPUG00000004743	rbm47	53	84.426	ENSVPAG00000000641	-	56	78.621	Vicugna_pacos
ENSIPUG00000004743	rbm47	97	78.596	ENSVVUG00000014774	RBM47	100	77.181	Vulpes_vulpes
ENSIPUG00000004743	rbm47	100	77.219	ENSXETG00000012802	rbm47	100	77.722	Xenopus_tropicalis
ENSIPUG00000004743	rbm47	100	76.732	ENSXCOG00000000780	rbm47	100	84.715	Xiphophorus_couchianus
ENSIPUG00000004743	rbm47	100	83.249	ENSXMAG00000009874	rbm47	100	86.957	Xiphophorus_maculatus