EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000004776 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: B52|SFRS6|SRP55
Full Name: -
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4147 bases
Position: chr21:11793269-11797415
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000006881	RRM_1	PF00076.22	3.4e-32	1	2
ENSIPUP00000006881	RRM_1	PF00076.22	3.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000007182	-	852	-	ENSIPUP00000006881	283 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000004776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000004776	-	63	60.526	ENSIPUG00000003439	srsf5a	69	62.500
ENSIPUG00000004776	-	77	38.428	ENSIPUG00000005511	srsf9	75	41.885
ENSIPUG00000004776	-	58	44.706	ENSIPUG00000017039	srsf1a	67	47.701
ENSIPUG00000004776	-	58	44.970	ENSIPUG00000008750	srsf1b	66	47.929

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004776	-	72	72.103	ENSG00000124193	SRSF6	58	92.308	Homo_sapiens
ENSIPUG00000004776	-	76	56.327	ENSAMEG00000003710	SRSF6	53	71.351	Ailuropoda_melanoleuca
ENSIPUG00000004776	-	76	75.664	ENSACIG00000020091	-	95	81.890	Amphilophus_citrinellus
ENSIPUG00000004776	-	63	86.486	ENSAOCG00000004309	-	57	87.151	Amphiprion_ocellaris
ENSIPUG00000004776	-	92	63.063	ENSAPEG00000013086	-	53	87.634	Amphiprion_percula
ENSIPUG00000004776	-	65	84.211	ENSAPEG00000020746	-	65	83.243	Amphiprion_percula
ENSIPUG00000004776	-	63	82.447	ENSATEG00000007255	-	71	81.818	Anabas_testudineus
ENSIPUG00000004776	-	63	86.740	ENSACAG00000002061	SRSF6	52	87.363	Anolis_carolinensis
ENSIPUG00000004776	-	75	73.504	ENSANAG00000024080	SRSF6	58	92.308	Aotus_nancymaae
ENSIPUG00000004776	-	85	82.383	ENSAMXG00000003101	-	50	85.106	Astyanax_mexicanus
ENSIPUG00000004776	-	92	67.925	ENSAMXG00000042692	-	96	82.353	Astyanax_mexicanus
ENSIPUG00000004776	-	72	76.233	ENSBTAG00000008527	SRSF6	58	93.590	Bos_taurus
ENSIPUG00000004776	-	64	86.413	ENSCJAG00000048403	SRSF6	68	86.885	Callithrix_jacchus
ENSIPUG00000004776	-	76	68.033	ENSCAFG00000009289	SRSF6	58	93.590	Canis_familiaris
ENSIPUG00000004776	-	76	68.033	ENSCAFG00020013559	SRSF6	58	93.590	Canis_lupus_dingo
ENSIPUG00000004776	-	72	76.233	ENSCHIG00000015890	-	58	93.590	Capra_hircus
ENSIPUG00000004776	-	72	75.336	ENSCHIG00000009148	-	53	85.870	Capra_hircus
ENSIPUG00000004776	-	64	80.978	ENSCPOG00000011761	SRSF6	58	92.308	Cavia_porcellus
ENSIPUG00000004776	-	72	74.236	ENSCATG00000030794	SRSF6	58	92.308	Cercocebus_atys
ENSIPUG00000004776	-	72	76.233	ENSCLAG00000010247	SRSF6	58	92.308	Chinchilla_lanigera
ENSIPUG00000004776	-	72	74.236	ENSCSAG00000014022	SRSF6	53	86.885	Chlorocebus_sabaeus
ENSIPUG00000004776	-	64	84.492	ENSCPBG00000018200	SRSF6	54	86.096	Chrysemys_picta_bellii
ENSIPUG00000004776	-	72	71.245	ENSCANG00000037774	-	53	85.792	Colobus_angolensis_palliatus
ENSIPUG00000004776	-	70	84.390	ENSDARG00000016783	srsf6b	82	93.590	Danio_rerio
ENSIPUG00000004776	-	72	74.236	ENSDNOG00000008410	SRSF6	53	86.885	Dasypus_novemcinctus
ENSIPUG00000004776	-	72	76.233	ENSDORG00000028378	Srsf6	58	92.308	Dipodomys_ordii
ENSIPUG00000004776	-	64	83.607	ENSETEG00000006221	SRSF6	53	84.153	Echinops_telfairi
ENSIPUG00000004776	-	64	86.413	ENSEASG00005023429	SRSF6	53	86.957	Equus_asinus_asinus
ENSIPUG00000004776	-	64	86.413	ENSECAG00000023932	SRSF6	56	86.885	Equus_caballus
ENSIPUG00000004776	-	92	75.000	ENSELUG00000013506	SRSF6	100	72.277	Esox_lucius
ENSIPUG00000004776	-	63	87.831	ENSELUG00000024182	SRSF6	76	96.154	Esox_lucius
ENSIPUG00000004776	-	76	68.033	ENSFCAG00000032814	SRSF6	53	86.957	Felis_catus
ENSIPUG00000004776	-	92	70.064	ENSFHEG00000023065	srsf6a	54	89.071	Fundulus_heteroclitus
ENSIPUG00000004776	-	87	86.111	ENSGMOG00000014458	srsf6a	51	79.581	Gadus_morhua
ENSIPUG00000004776	-	62	74.857	ENSGMOG00000006105	srsf6a	62	74.857	Gadus_morhua
ENSIPUG00000004776	-	71	77.619	ENSGALG00000000990	SRSF6	58	92.308	Gallus_gallus
ENSIPUG00000004776	-	81	86.740	ENSGACG00000006084	srsf6a	53	83.333	Gasterosteus_aculeatus
ENSIPUG00000004776	-	64	84.492	ENSGAGG00000003238	SRSF6	54	86.096	Gopherus_agassizii
ENSIPUG00000004776	-	72	72.103	ENSGGOG00000009808	SRSF6	58	92.308	Gorilla_gorilla
ENSIPUG00000004776	-	81	76.957	ENSHBUG00000006386	-	57	84.324	Haplochromis_burtoni
ENSIPUG00000004776	-	66	71.053	ENSHGLG00000007701	-	57	70.718	Heterocephalus_glaber_female
ENSIPUG00000004776	-	72	76.233	ENSHGLG00000007348	SRSF6	58	92.308	Heterocephalus_glaber_female
ENSIPUG00000004776	-	63	86.592	ENSHCOG00000002740	srsf6a	57	86.592	Hippocampus_comes
ENSIPUG00000004776	-	72	72.103	ENSSTOG00000010866	SRSF6	58	92.308	Ictidomys_tridecemlineatus
ENSIPUG00000004776	-	90	74.725	ENSKMAG00000011934	srsf6a	91	72.527	Kryptolebias_marmoratus
ENSIPUG00000004776	-	63	85.946	ENSLBEG00000007356	srsf6a	51	84.324	Labrus_bergylta
ENSIPUG00000004776	-	92	66.667	ENSLACG00000005466	SRSF6	61	78.744	Latimeria_chalumnae
ENSIPUG00000004776	-	72	74.236	ENSMFAG00000036925	SRSF6	58	92.308	Macaca_fascicularis
ENSIPUG00000004776	-	72	74.236	ENSMMUG00000006742	SRSF6	58	92.308	Macaca_mulatta
ENSIPUG00000004776	-	72	74.236	ENSMNEG00000027392	-	58	92.308	Macaca_nemestrina
ENSIPUG00000004776	-	72	74.236	ENSMNEG00000038270	-	53	86.885	Macaca_nemestrina
ENSIPUG00000004776	-	80	77.253	ENSMZEG00005008032	-	57	84.324	Maylandia_zebra
ENSIPUG00000004776	-	63	86.034	ENSMZEG00005020658	-	100	63.514	Maylandia_zebra
ENSIPUG00000004776	-	76	67.623	ENSMICG00000008537	SRSF6	58	92.308	Microcebus_murinus
ENSIPUG00000004776	-	72	72.103	MGP_CAROLIEiJ_G0024606	Srsf6	58	92.308	Mus_caroli
ENSIPUG00000004776	-	72	72.103	ENSMUSG00000016921	Srsf6	58	92.308	Mus_musculus
ENSIPUG00000004776	-	72	72.103	MGP_PahariEiJ_G0026050	Srsf6	58	92.308	Mus_pahari
ENSIPUG00000004776	-	72	72.103	MGP_SPRETEiJ_G0025528	Srsf6	58	92.308	Mus_spretus
ENSIPUG00000004776	-	64	86.413	ENSMPUG00000017692	SRSF6	64	86.885	Mustela_putorius_furo
ENSIPUG00000004776	-	72	54.878	ENSMLUG00000016618	SRSF6	53	59.512	Myotis_lucifugus
ENSIPUG00000004776	-	64	86.413	ENSNGAG00000017560	Srsf6	58	92.308	Nannospalax_galili
ENSIPUG00000004776	-	63	87.709	ENSNBRG00000014709	-	57	84.324	Neolamprologus_brichardi
ENSIPUG00000004776	-	72	72.103	ENSNLEG00000006524	SRSF6	58	92.308	Nomascus_leucogenys
ENSIPUG00000004776	-	66	72.851	ENSMEUG00000014615	SRSF6	61	85.946	Notamacropus_eugenii
ENSIPUG00000004776	-	64	66.837	ENSOCUG00000009785	-	63	67.539	Oryctolagus_cuniculus
ENSIPUG00000004776	-	71	49.500	ENSOCUG00000023999	-	79	50.000	Oryctolagus_cuniculus
ENSIPUG00000004776	-	54	72.368	ENSORLG00020017506	srsf6a	91	74.510	Oryzias_latipes_hni
ENSIPUG00000004776	-	64	85.870	ENSOGAG00000014468	SRSF6	53	86.413	Otolemur_garnettii
ENSIPUG00000004776	-	72	72.523	ENSOARG00000003117	SRSF6	53	84.153	Ovis_aries
ENSIPUG00000004776	-	64	76.111	ENSPPAG00000043131	-	97	58.249	Pan_paniscus
ENSIPUG00000004776	-	72	71.674	ENSPPAG00000034327	-	53	86.413	Pan_paniscus
ENSIPUG00000004776	-	76	68.033	ENSPPRG00000008917	SRSF6	53	86.957	Panthera_pardus
ENSIPUG00000004776	-	72	72.103	ENSPTRG00000044686	-	58	92.308	Pan_troglodytes
ENSIPUG00000004776	-	64	76.111	ENSPTRG00000046274	-	97	58.249	Pan_troglodytes
ENSIPUG00000004776	-	72	74.236	ENSPANG00000035224	SRSF6	58	92.308	Papio_anubis
ENSIPUG00000004776	-	90	82.123	ENSPKIG00000018463	-	77	94.872	Paramormyrops_kingsleyae
ENSIPUG00000004776	-	79	75.362	ENSPKIG00000015703	-	95	63.699	Paramormyrops_kingsleyae
ENSIPUG00000004776	-	90	72.697	ENSPMGG00000014963	srsf6a	55	92.350	Periophthalmus_magnuspinnatus
ENSIPUG00000004776	-	72	71.610	ENSPCIG00000003820	SRSF6	58	92.308	Phascolarctos_cinereus
ENSIPUG00000004776	-	81	93.103	ENSPFOG00000006437	srsf6a	50	84.211	Poecilia_formosa
ENSIPUG00000004776	-	89	87.634	ENSPLAG00000009243	srsf6a	80	84.252	Poecilia_latipinna
ENSIPUG00000004776	-	63	89.130	ENSPMEG00000006042	SRSF6	53	87.027	Poecilia_mexicana
ENSIPUG00000004776	-	72	72.103	ENSPPYG00000011019	SRSF6	53	86.957	Pongo_abelii
ENSIPUG00000004776	-	64	84.783	ENSPCAG00000010954	SRSF6	55	85.326	Procavia_capensis
ENSIPUG00000004776	-	76	67.623	ENSPCOG00000026364	SRSF6	58	92.308	Propithecus_coquereli
ENSIPUG00000004776	-	72	71.674	ENSPVAG00000015232	SRSF6	53	86.885	Pteropus_vampyrus
ENSIPUG00000004776	-	63	87.709	ENSPNYG00000004944	-	57	84.324	Pundamilia_nyererei
ENSIPUG00000004776	-	90	65.257	ENSPNYG00000011272	-	51	87.097	Pundamilia_nyererei
ENSIPUG00000004776	-	72	72.103	ENSRNOG00000006380	Srsf6	54	86.957	Rattus_norvegicus
ENSIPUG00000004776	-	72	74.236	ENSRBIG00000041414	SRSF6	60	92.308	Rhinopithecus_bieti
ENSIPUG00000004776	-	72	72.103	ENSRROG00000029989	SRSF6	58	92.308	Rhinopithecus_roxellana
ENSIPUG00000004776	-	75	73.504	ENSSBOG00000033708	-	58	92.308	Saimiri_boliviensis_boliviensis
ENSIPUG00000004776	-	63	85.052	ENSSFOG00015019681	-	53	82.990	Scleropages_formosus
ENSIPUG00000004776	-	63	91.713	ENSSFOG00015015169	SRSF6	59	90.710	Scleropages_formosus
ENSIPUG00000004776	-	63	83.889	ENSSMAG00000017447	-	55	83.889	Scophthalmus_maximus
ENSIPUG00000004776	-	63	68.687	ENSSMAG00000014819	-	75	69.780	Scophthalmus_maximus
ENSIPUG00000004776	-	92	56.426	ENSSLDG00000022841	srsf6a	53	87.097	Seriola_lalandi_dorsalis
ENSIPUG00000004776	-	71	79.524	ENSSPUG00000004967	SRSF6	58	92.308	Sphenodon_punctatus
ENSIPUG00000004776	-	90	78.439	ENSSPAG00000002362	srsf6a	91	81.041	Stegastes_partitus
ENSIPUG00000004776	-	64	86.413	ENSSSCG00000007362	SRSF6	61	86.885	Sus_scrofa
ENSIPUG00000004776	-	71	79.227	ENSTGUG00000003455	SRSF6	61	78.505	Taeniopygia_guttata
ENSIPUG00000004776	-	90	71.242	ENSTNIG00000001692	srsf6a	56	86.022	Tetraodon_nigroviridis
ENSIPUG00000004776	-	76	68.033	ENSUAMG00000003559	SRSF6	58	93.590	Ursus_americanus
ENSIPUG00000004776	-	63	89.503	ENSXMAG00000021849	srsf6a	55	89.011	Xiphophorus_maculatus