EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000004912 (Gene tree)
Gene ID: 100304713
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 49970 bases
Position: chr15:9051662-9101631
Accession: 100304713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000007135	PRP1_N	PF06424.12	3.3e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000007447	-	5439	XM_017487483	ENSIPUP00000007135	972 (aa)	XP_017342972	A0A2D0SJV5

Gene Model

Click here to download ENSIPUG00000004912's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004912's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004912	prpf6	96	92.774	ENSG00000101161	PRPF6	100	92.774	Homo_sapiens
ENSIPUG00000004912	prpf6	100	93.224	ENSAPOG00000010395	prpf6	100	93.224	Acanthochromis_polyacanthus
ENSIPUG00000004912	prpf6	96	92.357	ENSAMEG00000001916	PRPF6	99	92.357	Ailuropoda_melanoleuca
ENSIPUG00000004912	prpf6	100	93.224	ENSACIG00000019862	prpf6	100	93.224	Amphilophus_citrinellus
ENSIPUG00000004912	prpf6	100	93.326	ENSAOCG00000012988	prpf6	100	93.326	Amphiprion_ocellaris
ENSIPUG00000004912	prpf6	96	88.021	ENSAPEG00000008301	prpf6	100	88.235	Amphiprion_percula
ENSIPUG00000004912	prpf6	100	93.121	ENSATEG00000005581	prpf6	100	93.121	Anabas_testudineus
ENSIPUG00000004912	prpf6	96	93.411	ENSACAG00000006464	PRPF6	98	92.228	Anolis_carolinensis
ENSIPUG00000004912	prpf6	96	92.774	ENSANAG00000012661	PRPF6	100	93.522	Aotus_nancymaae
ENSIPUG00000004912	prpf6	100	92.813	ENSACLG00000025875	prpf6	100	92.813	Astatotilapia_calliptera
ENSIPUG00000004912	prpf6	100	94.980	ENSAMXG00000001929	prpf6	100	94.980	Astyanax_mexicanus
ENSIPUG00000004912	prpf6	96	93.305	ENSBTAG00000011656	PRPF6	100	93.305	Bos_taurus
ENSIPUG00000004912	prpf6	96	92.774	ENSCJAG00000010616	PRPF6	100	92.774	Callithrix_jacchus
ENSIPUG00000004912	prpf6	96	93.624	ENSCAFG00000013165	PRPF6	100	93.624	Canis_familiaris
ENSIPUG00000004912	prpf6	96	93.624	ENSCAFG00020002050	PRPF6	100	93.624	Canis_lupus_dingo
ENSIPUG00000004912	prpf6	96	93.305	ENSCHIG00000018187	PRPF6	100	93.305	Capra_hircus
ENSIPUG00000004912	prpf6	96	93.411	ENSTSYG00000007814	PRPF6	100	93.411	Carlito_syrichta
ENSIPUG00000004912	prpf6	94	92.475	ENSCAPG00000015077	PRPF6	100	92.039	Cavia_aperea
ENSIPUG00000004912	prpf6	96	93.624	ENSCPOG00000007518	PRPF6	100	93.624	Cavia_porcellus
ENSIPUG00000004912	prpf6	96	89.692	ENSCCAG00000024564	PRPF6	100	89.692	Cebus_capucinus
ENSIPUG00000004912	prpf6	96	92.880	ENSCATG00000037473	PRPF6	100	92.880	Cercocebus_atys
ENSIPUG00000004912	prpf6	96	90.117	ENSCLAG00000003854	PRPF6	100	90.117	Chinchilla_lanigera
ENSIPUG00000004912	prpf6	96	88.173	ENSCSAG00000016742	PRPF6	100	88.173	Chlorocebus_sabaeus
ENSIPUG00000004912	prpf6	81	78.049	ENSCHOG00000003315	-	98	77.851	Choloepus_hoffmanni
ENSIPUG00000004912	prpf6	98	92.316	ENSCPBG00000013964	PRPF6	99	91.847	Chrysemys_picta_bellii
ENSIPUG00000004912	prpf6	96	73.228	ENSCING00000008817	-	99	73.016	Ciona_intestinalis
ENSIPUG00000004912	prpf6	96	92.667	ENSCANG00000038230	PRPF6	100	92.667	Colobus_angolensis_palliatus
ENSIPUG00000004912	prpf6	96	93.836	ENSCGRG00001022666	Prpf6	100	93.836	Cricetulus_griseus_chok1gshd
ENSIPUG00000004912	prpf6	96	89.412	ENSCSEG00000018561	prpf6	100	89.412	Cynoglossus_semilaevis
ENSIPUG00000004912	prpf6	100	92.710	ENSCVAG00000010550	prpf6	100	92.725	Cyprinodon_variegatus
ENSIPUG00000004912	prpf6	100	93.846	ENSDARG00000091367	prpf6	100	95.450	Danio_rerio
ENSIPUG00000004912	prpf6	96	93.092	ENSDNOG00000040544	PRPF6	100	93.092	Dasypus_novemcinctus
ENSIPUG00000004912	prpf6	88	93.107	ENSDORG00000005406	Prpf6	100	93.107	Dipodomys_ordii
ENSIPUG00000004912	prpf6	96	71.016	FBgn0036828	CG6841	99	71.016	Drosophila_melanogaster
ENSIPUG00000004912	prpf6	83	92.105	ENSETEG00000004447	PRPF6	85	92.105	Echinops_telfairi
ENSIPUG00000004912	prpf6	96	86.243	ENSEBUG00000008835	prpf6	100	86.032	Eptatretus_burgeri
ENSIPUG00000004912	prpf6	99	91.408	ENSEASG00005023115	PRPF6	100	93.305	Equus_asinus_asinus
ENSIPUG00000004912	prpf6	96	89.054	ENSECAG00000013983	PRPF6	100	89.054	Equus_caballus
ENSIPUG00000004912	prpf6	86	95.833	ENSEEUG00000000180	PRPF6	81	95.833	Erinaceus_europaeus
ENSIPUG00000004912	prpf6	97	93.129	ENSELUG00000001945	prpf6	95	92.662	Esox_lucius
ENSIPUG00000004912	prpf6	96	93.411	ENSFCAG00000001183	PRPF6	100	93.411	Felis_catus
ENSIPUG00000004912	prpf6	98	92.662	ENSFALG00000010326	-	99	92.196	Ficedula_albicollis
ENSIPUG00000004912	prpf6	97	85.506	ENSFALG00000006046	-	99	85.506	Ficedula_albicollis
ENSIPUG00000004912	prpf6	96	92.136	ENSFDAG00000006451	PRPF6	100	92.136	Fukomys_damarensis
ENSIPUG00000004912	prpf6	99	92.909	ENSFHEG00000000560	prpf6	100	92.828	Fundulus_heteroclitus
ENSIPUG00000004912	prpf6	97	93.637	ENSGMOG00000015622	prpf6	100	93.213	Gadus_morhua
ENSIPUG00000004912	prpf6	96	93.411	ENSGALG00000006001	PRPF6	100	93.411	Gallus_gallus
ENSIPUG00000004912	prpf6	100	87.782	ENSGAFG00000021109	prpf6	100	87.782	Gambusia_affinis
ENSIPUG00000004912	prpf6	97	93.737	ENSGACG00000002576	prpf6	99	93.737	Gasterosteus_aculeatus
ENSIPUG00000004912	prpf6	98	92.292	ENSGAGG00000008653	PRPF6	99	91.641	Gopherus_agassizii
ENSIPUG00000004912	prpf6	96	92.774	ENSGGOG00000016876	PRPF6	100	92.774	Gorilla_gorilla
ENSIPUG00000004912	prpf6	100	92.813	ENSHBUG00000004496	prpf6	100	92.813	Haplochromis_burtoni
ENSIPUG00000004912	prpf6	96	93.518	ENSHGLG00000009222	PRPF6	100	93.518	Heterocephalus_glaber_female
ENSIPUG00000004912	prpf6	94	93.457	ENSHGLG00100016600	PRPF6	100	93.457	Heterocephalus_glaber_male
ENSIPUG00000004912	prpf6	99	91.581	ENSHCOG00000011513	prpf6	100	91.684	Hippocampus_comes
ENSIPUG00000004912	prpf6	96	91.083	ENSSTOG00000002922	PRPF6	100	90.658	Ictidomys_tridecemlineatus
ENSIPUG00000004912	prpf6	96	93.624	ENSJJAG00000000836	Prpf6	100	93.624	Jaculus_jaculus
ENSIPUG00000004912	prpf6	97	94.492	ENSKMAG00000017800	prpf6	100	92.710	Kryptolebias_marmoratus
ENSIPUG00000004912	prpf6	100	92.094	ENSLBEG00000012582	prpf6	100	92.094	Labrus_bergylta
ENSIPUG00000004912	prpf6	96	95.426	ENSLOCG00000004827	prpf6	99	92.754	Lepisosteus_oculatus
ENSIPUG00000004912	prpf6	96	93.199	ENSLAFG00000005272	PRPF6	100	93.199	Loxodonta_africana
ENSIPUG00000004912	prpf6	96	92.667	ENSMFAG00000037542	PRPF6	100	92.667	Macaca_fascicularis
ENSIPUG00000004912	prpf6	96	86.412	ENSMMUG00000015558	PRPF6	95	94.652	Macaca_mulatta
ENSIPUG00000004912	prpf6	96	79.873	ENSMNEG00000045555	PRPF6	100	79.873	Macaca_nemestrina
ENSIPUG00000004912	prpf6	100	92.813	ENSMAMG00000010718	prpf6	100	92.813	Mastacembelus_armatus
ENSIPUG00000004912	prpf6	97	94.062	ENSMZEG00005015261	-	100	94.062	Maylandia_zebra
ENSIPUG00000004912	prpf6	89	94.097	ENSMZEG00005026539	prpf6	98	94.097	Maylandia_zebra
ENSIPUG00000004912	prpf6	94	93.348	ENSMGAG00000006634	PRPF6	100	93.348	Meleagris_gallopavo
ENSIPUG00000004912	prpf6	96	93.836	ENSMAUG00000013969	Prpf6	100	93.836	Mesocricetus_auratus
ENSIPUG00000004912	prpf6	84	92.579	ENSMICG00000017793	PRPF6	98	92.602	Microcebus_murinus
ENSIPUG00000004912	prpf6	96	93.730	ENSMOCG00000001701	Prpf6	100	93.730	Microtus_ochrogaster
ENSIPUG00000004912	prpf6	96	94.118	ENSMMOG00000020419	prpf6	100	94.118	Mola_mola
ENSIPUG00000004912	prpf6	94	93.835	ENSMODG00000017051	PRPF6	99	93.835	Monodelphis_domestica
ENSIPUG00000004912	prpf6	95	94.270	ENSMALG00000000089	prpf6	100	94.270	Monopterus_albus
ENSIPUG00000004912	prpf6	96	87.460	MGP_CAROLIEiJ_G0024814	Prpf6	100	87.035	Mus_caroli
ENSIPUG00000004912	prpf6	96	93.836	ENSMUSG00000002455	Prpf6	100	93.836	Mus_musculus
ENSIPUG00000004912	prpf6	96	93.836	MGP_PahariEiJ_G0026262	Prpf6	100	93.836	Mus_pahari
ENSIPUG00000004912	prpf6	96	93.836	MGP_SPRETEiJ_G0025741	Prpf6	100	93.836	Mus_spretus
ENSIPUG00000004912	prpf6	86	93.423	ENSMPUG00000008673	PRPF6	98	93.423	Mustela_putorius_furo
ENSIPUG00000004912	prpf6	96	93.730	ENSNGAG00000003365	Prpf6	100	93.730	Nannospalax_galili
ENSIPUG00000004912	prpf6	100	92.916	ENSNBRG00000015025	prpf6	100	92.916	Neolamprologus_brichardi
ENSIPUG00000004912	prpf6	96	92.667	ENSNLEG00000010208	PRPF6	100	92.667	Nomascus_leucogenys
ENSIPUG00000004912	prpf6	96	85.141	ENSMEUG00000009824	-	90	85.375	Notamacropus_eugenii
ENSIPUG00000004912	prpf6	96	88.098	ENSODEG00000004841	PRPF6	100	88.098	Octodon_degus
ENSIPUG00000004912	prpf6	100	92.813	ENSONIG00000017406	prpf6	100	92.813	Oreochromis_niloticus
ENSIPUG00000004912	prpf6	96	93.730	ENSOANG00000004920	PRPF6	100	93.730	Ornithorhynchus_anatinus
ENSIPUG00000004912	prpf6	95	91.845	ENSOCUG00000014151	PRPF6	100	91.845	Oryctolagus_cuniculus
ENSIPUG00000004912	prpf6	100	91.581	ENSORLG00000009592	prpf6	100	91.581	Oryzias_latipes
ENSIPUG00000004912	prpf6	100	91.684	ENSORLG00020001458	prpf6	100	91.684	Oryzias_latipes_hni
ENSIPUG00000004912	prpf6	100	91.684	ENSORLG00015018762	prpf6	100	91.684	Oryzias_latipes_hsok
ENSIPUG00000004912	prpf6	100	91.889	ENSOMEG00000012174	prpf6	100	91.889	Oryzias_melastigma
ENSIPUG00000004912	prpf6	96	86.306	ENSOGAG00000007573	PRPF6	100	86.306	Otolemur_garnettii
ENSIPUG00000004912	prpf6	96	92.880	ENSOARG00000008776	PRPF6	99	92.880	Ovis_aries
ENSIPUG00000004912	prpf6	96	92.774	ENSPPAG00000008686	PRPF6	100	92.774	Pan_paniscus
ENSIPUG00000004912	prpf6	96	93.411	ENSPPRG00000008497	PRPF6	100	93.411	Panthera_pardus
ENSIPUG00000004912	prpf6	94	93.348	ENSPTIG00000011184	PRPF6	97	93.348	Panthera_tigris_altaica
ENSIPUG00000004912	prpf6	96	92.774	ENSPTRG00000013765	PRPF6	100	92.774	Pan_troglodytes
ENSIPUG00000004912	prpf6	96	92.455	ENSPANG00000024135	PRPF6	100	92.455	Papio_anubis
ENSIPUG00000004912	prpf6	97	94.953	ENSPKIG00000005627	prpf6	99	94.953	Paramormyrops_kingsleyae
ENSIPUG00000004912	prpf6	89	93.764	ENSPSIG00000007717	PRPF6	98	93.764	Pelodiscus_sinensis
ENSIPUG00000004912	prpf6	99	92.197	ENSPMGG00000008925	prpf6	100	91.478	Periophthalmus_magnuspinnatus
ENSIPUG00000004912	prpf6	96	93.836	ENSPEMG00000016036	Prpf6	100	93.836	Peromyscus_maniculatus_bairdii
ENSIPUG00000004912	prpf6	96	87.553	ENSPMAG00000006144	prpf6	99	87.553	Petromyzon_marinus
ENSIPUG00000004912	prpf6	96	93.836	ENSPCIG00000017909	PRPF6	100	93.836	Phascolarctos_cinereus
ENSIPUG00000004912	prpf6	100	92.441	ENSPFOG00000006431	prpf6	99	92.441	Poecilia_formosa
ENSIPUG00000004912	prpf6	100	92.505	ENSPLAG00000005974	prpf6	100	92.505	Poecilia_latipinna
ENSIPUG00000004912	prpf6	100	92.608	ENSPMEG00000009977	prpf6	100	92.608	Poecilia_mexicana
ENSIPUG00000004912	prpf6	100	92.505	ENSPREG00000017993	prpf6	95	92.505	Poecilia_reticulata
ENSIPUG00000004912	prpf6	96	92.242	ENSPPYG00000011256	PRPF6	100	92.242	Pongo_abelii
ENSIPUG00000004912	prpf6	91	94.935	ENSPCAG00000006536	PRPF6	88	94.935	Procavia_capensis
ENSIPUG00000004912	prpf6	96	92.774	ENSPCOG00000016881	PRPF6	100	92.774	Propithecus_coquereli
ENSIPUG00000004912	prpf6	96	87.248	ENSPVAG00000014316	PRPF6	100	87.248	Pteropus_vampyrus
ENSIPUG00000004912	prpf6	100	79.162	ENSPNYG00000001939	prpf6	100	79.571	Pundamilia_nyererei
ENSIPUG00000004912	prpf6	100	95.795	ENSPNAG00000015606	prpf6	100	95.795	Pygocentrus_nattereri
ENSIPUG00000004912	prpf6	96	93.730	ENSRNOG00000051498	Prpf6	100	93.730	Rattus_norvegicus
ENSIPUG00000004912	prpf6	96	92.667	ENSRBIG00000043613	PRPF6	100	92.667	Rhinopithecus_bieti
ENSIPUG00000004912	prpf6	96	89.630	ENSRROG00000040969	PRPF6	100	89.630	Rhinopithecus_roxellana
ENSIPUG00000004912	prpf6	86	89.982	ENSSBOG00000020632	PRPF6	90	88.434	Saimiri_boliviensis_boliviensis
ENSIPUG00000004912	prpf6	96	93.836	ENSSHAG00000016810	PRPF6	100	93.836	Sarcophilus_harrisii
ENSIPUG00000004912	prpf6	95	95.914	ENSSFOG00015020859	prpf6	100	95.914	Scleropages_formosus
ENSIPUG00000004912	prpf6	100	92.213	ENSSMAG00000008112	prpf6	100	92.300	Scophthalmus_maximus
ENSIPUG00000004912	prpf6	100	93.121	ENSSDUG00000016142	prpf6	100	93.224	Seriola_dumerili
ENSIPUG00000004912	prpf6	100	93.121	ENSSLDG00000025283	prpf6	99	93.224	Seriola_lalandi_dorsalis
ENSIPUG00000004912	prpf6	89	92.263	ENSSPUG00000018260	PRPF6	98	92.263	Sphenodon_punctatus
ENSIPUG00000004912	prpf6	100	93.224	ENSSPAG00000015850	prpf6	100	93.224	Stegastes_partitus
ENSIPUG00000004912	prpf6	98	91.562	ENSSSCG00000029119	PRPF6	98	92.841	Sus_scrofa
ENSIPUG00000004912	prpf6	97	93.220	ENSTGUG00000007221	PRPF6	100	93.220	Taeniopygia_guttata
ENSIPUG00000004912	prpf6	100	92.402	ENSTRUG00000002920	prpf6	100	92.402	Takifugu_rubripes
ENSIPUG00000004912	prpf6	96	87.540	ENSTNIG00000017873	prpf6	100	87.540	Tetraodon_nigroviridis
ENSIPUG00000004912	prpf6	85	94.444	ENSTBEG00000005348	PRPF6	85	94.444	Tupaia_belangeri
ENSIPUG00000004912	prpf6	96	93.305	ENSTTRG00000013068	PRPF6	100	93.305	Tursiops_truncatus
ENSIPUG00000004912	prpf6	94	92.065	ENSUMAG00000021631	PRPF6	98	92.065	Ursus_maritimus
ENSIPUG00000004912	prpf6	96	93.624	ENSVVUG00000014948	PRPF6	100	93.624	Vulpes_vulpes
ENSIPUG00000004912	prpf6	96	93.191	ENSXETG00000012054	prpf6	99	91.134	Xenopus_tropicalis
ENSIPUG00000004912	prpf6	100	92.608	ENSXCOG00000008082	prpf6	100	92.608	Xiphophorus_couchianus
ENSIPUG00000004912	prpf6	100	92.505	ENSXMAG00000015581	prpf6	100	92.608	Xiphophorus_maculatus