EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000005108 (Gene tree)
Gene ID: 108280546
Gene Symbol: UPF1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 20526 bases
Position: chr20:17923234-17943759
Accession: 108280546
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000007528	UPF1_Zn_bind	PF09416.10	8.4e-75	1	1
ENSIPUP00000007528	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000007855	-	8358	XM_017495639	ENSIPUP00000007528	1100 (aa)	XP_017351128	W5UKX5

Gene Model

Click here to download ENSIPUG00000005108's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005108's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005108	UPF1	100	93.761	ENSG00000005007	UPF1	100	93.405	Homo_sapiens
ENSIPUG00000005108	UPF1	100	95.104	ENSAPOG00000010916	-	100	94.923	Acanthochromis_polyacanthus
ENSIPUG00000005108	UPF1	100	94.480	ENSAPOG00000023773	upf1	100	94.480	Acanthochromis_polyacanthus
ENSIPUG00000005108	UPF1	100	93.434	ENSAMEG00000011474	UPF1	100	93.079	Ailuropoda_melanoleuca
ENSIPUG00000005108	UPF1	100	94.932	ENSACIG00000019949	upf1	100	94.909	Amphilophus_citrinellus
ENSIPUG00000005108	UPF1	93	94.455	ENSACIG00000010985	-	100	94.358	Amphilophus_citrinellus
ENSIPUG00000005108	UPF1	100	94.000	ENSAOCG00000018519	upf1	100	94.165	Amphiprion_ocellaris
ENSIPUG00000005108	UPF1	100	95.195	ENSAOCG00000006352	-	100	95.014	Amphiprion_ocellaris
ENSIPUG00000005108	UPF1	100	94.000	ENSAPEG00000016344	upf1	100	94.165	Amphiprion_percula
ENSIPUG00000005108	UPF1	100	95.195	ENSAPEG00000006292	-	100	95.014	Amphiprion_percula
ENSIPUG00000005108	UPF1	100	93.405	ENSATEG00000017867	upf1	100	93.817	Anabas_testudineus
ENSIPUG00000005108	UPF1	100	95.104	ENSATEG00000016606	-	100	94.923	Anabas_testudineus
ENSIPUG00000005108	UPF1	95	95.360	ENSAPLG00000009175	UPF1	100	94.886	Anas_platyrhynchos
ENSIPUG00000005108	UPF1	95	93.296	ENSANAG00000024107	UPF1	96	92.823	Aotus_nancymaae
ENSIPUG00000005108	UPF1	100	94.751	ENSACLG00000007181	upf1	100	94.727	Astatotilapia_calliptera
ENSIPUG00000005108	UPF1	100	94.374	ENSACLG00000022630	-	100	94.828	Astatotilapia_calliptera
ENSIPUG00000005108	UPF1	100	99.273	ENSAMXG00000042187	upf1	100	99.273	Astyanax_mexicanus
ENSIPUG00000005108	UPF1	100	93.446	ENSBTAG00000020922	UPF1	100	93.091	Bos_taurus
ENSIPUG00000005108	UPF1	81	54.596	WBGene00004880	smg-2	83	54.374	Caenorhabditis_elegans
ENSIPUG00000005108	UPF1	100	93.021	ENSCJAG00000019627	UPF1	100	92.668	Callithrix_jacchus
ENSIPUG00000005108	UPF1	100	93.198	ENSCAFG00000014578	UPF1	100	92.845	Canis_familiaris
ENSIPUG00000005108	UPF1	100	93.939	ENSCAFG00020012347	UPF1	100	93.583	Canis_lupus_dingo
ENSIPUG00000005108	UPF1	100	94.191	ENSCHIG00000011018	UPF1	100	93.834	Capra_hircus
ENSIPUG00000005108	UPF1	95	94.967	ENSTSYG00000008877	UPF1	98	94.492	Carlito_syrichta
ENSIPUG00000005108	UPF1	96	93.991	ENSCAPG00000005758	UPF1	95	94.207	Cavia_aperea
ENSIPUG00000005108	UPF1	100	93.801	ENSCPOG00000025463	UPF1	100	93.351	Cavia_porcellus
ENSIPUG00000005108	UPF1	100	93.761	ENSCCAG00000032175	UPF1	100	93.405	Cebus_capucinus
ENSIPUG00000005108	UPF1	94	95.138	ENSCATG00000040306	UPF1	98	94.667	Cercocebus_atys
ENSIPUG00000005108	UPF1	95	95.157	ENSCLAG00000004037	UPF1	99	94.682	Chinchilla_lanigera
ENSIPUG00000005108	UPF1	100	93.761	ENSCSAG00000005276	UPF1	100	93.405	Chlorocebus_sabaeus
ENSIPUG00000005108	UPF1	100	93.907	ENSCPBG00000012513	UPF1	100	93.459	Chrysemys_picta_bellii
ENSIPUG00000005108	UPF1	77	79.836	ENSCING00000021399	-	99	79.601	Ciona_intestinalis
ENSIPUG00000005108	UPF1	99	72.556	ENSCSAVG00000006533	-	99	72.361	Ciona_savignyi
ENSIPUG00000005108	UPF1	95	95.157	ENSCANG00000029819	UPF1	97	94.682	Colobus_angolensis_palliatus
ENSIPUG00000005108	UPF1	100	93.644	ENSCGRG00001021067	Upf1	100	93.286	Cricetulus_griseus_chok1gshd
ENSIPUG00000005108	UPF1	95	94.587	ENSCGRG00000013480	Upf1	98	94.112	Cricetulus_griseus_crigri
ENSIPUG00000005108	UPF1	100	94.737	ENSCSEG00000016159	-	100	94.192	Cynoglossus_semilaevis
ENSIPUG00000005108	UPF1	100	89.020	ENSCSEG00000017239	upf1	100	88.929	Cynoglossus_semilaevis
ENSIPUG00000005108	UPF1	100	93.835	ENSCVAG00000010561	upf1	100	94.288	Cyprinodon_variegatus
ENSIPUG00000005108	UPF1	100	98.545	ENSDARG00000016302	upf1	100	98.545	Danio_rerio
ENSIPUG00000005108	UPF1	95	92.600	ENSDORG00000009984	Upf1	95	92.125	Dipodomys_ordii
ENSIPUG00000005108	UPF1	85	72.785	FBgn0030354	Upf1	81	71.503	Drosophila_melanogaster
ENSIPUG00000005108	UPF1	54	86.777	ENSEBUG00000010069	upf1	96	87.107	Eptatretus_burgeri
ENSIPUG00000005108	UPF1	100	94.102	ENSEASG00005006549	UPF1	100	93.744	Equus_asinus_asinus
ENSIPUG00000005108	UPF1	100	94.102	ENSECAG00000010639	UPF1	100	93.744	Equus_caballus
ENSIPUG00000005108	UPF1	100	93.948	ENSELUG00000012916	-	100	94.580	Esox_lucius
ENSIPUG00000005108	UPF1	100	94.751	ENSELUG00000020917	upf1	100	93.575	Esox_lucius
ENSIPUG00000005108	UPF1	100	93.198	ENSFCAG00000009757	UPF1	100	92.845	Felis_catus
ENSIPUG00000005108	UPF1	95	95.714	ENSFALG00000009312	UPF1	96	95.238	Ficedula_albicollis
ENSIPUG00000005108	UPF1	95	95.062	ENSFDAG00000014816	UPF1	99	94.587	Fukomys_damarensis
ENSIPUG00000005108	UPF1	100	91.367	ENSFHEG00000006428	upf1	100	90.412	Fundulus_heteroclitus
ENSIPUG00000005108	UPF1	86	94.384	ENSFHEG00000016276	-	96	94.279	Fundulus_heteroclitus
ENSIPUG00000005108	UPF1	100	93.178	ENSGMOG00000007541	upf1	100	93.447	Gadus_morhua
ENSIPUG00000005108	UPF1	100	93.929	ENSGALG00000003220	UPF1	100	93.393	Gallus_gallus
ENSIPUG00000005108	UPF1	100	93.835	ENSGAFG00000004831	upf1	100	94.288	Gambusia_affinis
ENSIPUG00000005108	UPF1	63	95.683	ENSGAFG00000015443	-	85	95.683	Gambusia_affinis
ENSIPUG00000005108	UPF1	100	94.509	ENSGAGG00000022217	UPF1	100	94.149	Gopherus_agassizii
ENSIPUG00000005108	UPF1	95	95.973	ENSGGOG00000002608	UPF1	99	95.494	Gorilla_gorilla
ENSIPUG00000005108	UPF1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSIPUG00000005108	UPF1	89	93.590	ENSHBUG00000014694	upf1	100	93.590	Haplochromis_burtoni
ENSIPUG00000005108	UPF1	100	92.756	ENSHGLG00000010900	UPF1	100	92.403	Heterocephalus_glaber_female
ENSIPUG00000005108	UPF1	95	93.162	ENSHGLG00100005904	UPF1	96	92.688	Heterocephalus_glaber_male
ENSIPUG00000005108	UPF1	100	94.470	ENSHCOG00000008918	upf1	100	94.470	Hippocampus_comes
ENSIPUG00000005108	UPF1	100	93.761	ENSSTOG00000009196	UPF1	100	93.405	Ictidomys_tridecemlineatus
ENSIPUG00000005108	UPF1	100	92.800	ENSJJAG00000023151	Upf1	100	92.444	Jaculus_jaculus
ENSIPUG00000005108	UPF1	100	93.926	ENSKMAG00000004962	upf1	100	94.379	Kryptolebias_marmoratus
ENSIPUG00000005108	UPF1	100	95.014	ENSLBEG00000027848	-	100	94.832	Labrus_bergylta
ENSIPUG00000005108	UPF1	100	93.178	ENSLBEG00000014862	upf1	100	93.357	Labrus_bergylta
ENSIPUG00000005108	UPF1	63	96.418	ENSLACG00000008482	UPF1	100	95.989	Latimeria_chalumnae
ENSIPUG00000005108	UPF1	100	97.368	ENSLOCG00000002072	upf1	100	97.187	Lepisosteus_oculatus
ENSIPUG00000005108	UPF1	100	92.920	ENSLAFG00000014963	UPF1	100	92.566	Loxodonta_africana
ENSIPUG00000005108	UPF1	100	93.683	ENSMFAG00000037748	UPF1	100	93.327	Macaca_fascicularis
ENSIPUG00000005108	UPF1	100	93.434	ENSMMUG00000023286	UPF1	100	93.079	Macaca_mulatta
ENSIPUG00000005108	UPF1	100	93.683	ENSMNEG00000000046	UPF1	100	93.327	Macaca_nemestrina
ENSIPUG00000005108	UPF1	95	95.157	ENSMLEG00000028404	UPF1	99	94.682	Mandrillus_leucophaeus
ENSIPUG00000005108	UPF1	100	94.832	ENSMAMG00000006231	-	100	94.651	Mastacembelus_armatus
ENSIPUG00000005108	UPF1	100	93.190	ENSMAMG00000006229	upf1	100	93.728	Mastacembelus_armatus
ENSIPUG00000005108	UPF1	100	94.374	ENSMZEG00005016386	-	100	94.828	Maylandia_zebra
ENSIPUG00000005108	UPF1	100	93.739	ENSMZEG00005003489	upf1	100	94.239	Maylandia_zebra
ENSIPUG00000005108	UPF1	95	94.877	ENSMGAG00000004745	UPF1	100	94.402	Meleagris_gallopavo
ENSIPUG00000005108	UPF1	95	94.587	ENSMAUG00000011398	Upf1	95	94.112	Mesocricetus_auratus
ENSIPUG00000005108	UPF1	100	93.672	ENSMICG00000001659	UPF1	100	93.316	Microcebus_murinus
ENSIPUG00000005108	UPF1	100	92.902	ENSMOCG00000005699	Upf1	100	92.635	Microtus_ochrogaster
ENSIPUG00000005108	UPF1	95	92.646	ENSMMOG00000007537	-	99	92.455	Mola_mola
ENSIPUG00000005108	UPF1	100	94.091	ENSMMOG00000007881	upf1	100	94.016	Mola_mola
ENSIPUG00000005108	UPF1	100	92.687	ENSMODG00000003689	UPF1	100	92.423	Monodelphis_domestica
ENSIPUG00000005108	UPF1	100	93.677	ENSMALG00000018100	-	100	93.496	Monopterus_albus
ENSIPUG00000005108	UPF1	100	94.636	ENSMALG00000000144	upf1	100	94.636	Monopterus_albus
ENSIPUG00000005108	UPF1	100	93.554	MGP_CAROLIEiJ_G0031142	Upf1	100	93.196	Mus_caroli
ENSIPUG00000005108	UPF1	100	93.554	ENSMUSG00000058301	Upf1	100	93.196	Mus_musculus
ENSIPUG00000005108	UPF1	100	93.554	MGP_PahariEiJ_G0021607	Upf1	100	93.196	Mus_pahari
ENSIPUG00000005108	UPF1	100	93.554	MGP_SPRETEiJ_G0032260	Upf1	100	93.196	Mus_spretus
ENSIPUG00000005108	UPF1	100	93.939	ENSMPUG00000015516	UPF1	100	93.583	Mustela_putorius_furo
ENSIPUG00000005108	UPF1	99	93.739	ENSMLUG00000012122	UPF1	99	93.381	Myotis_lucifugus
ENSIPUG00000005108	UPF1	100	92.566	ENSNGAG00000024107	Upf1	100	92.212	Nannospalax_galili
ENSIPUG00000005108	UPF1	100	93.032	ENSNBRG00000000670	upf1	100	93.000	Neolamprologus_brichardi
ENSIPUG00000005108	UPF1	100	90.901	ENSNBRG00000022069	-	100	94.180	Neolamprologus_brichardi
ENSIPUG00000005108	UPF1	95	89.364	ENSNLEG00000006062	UPF1	99	88.889	Nomascus_leucogenys
ENSIPUG00000005108	UPF1	83	89.844	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSIPUG00000005108	UPF1	95	88.591	ENSOPRG00000014018	UPF1	99	88.111	Ochotona_princeps
ENSIPUG00000005108	UPF1	100	94.155	ENSODEG00000012426	UPF1	100	93.705	Octodon_degus
ENSIPUG00000005108	UPF1	100	93.739	ENSONIG00000010452	upf1	100	94.239	Oreochromis_niloticus
ENSIPUG00000005108	UPF1	100	94.374	ENSONIG00000012729	-	100	94.828	Oreochromis_niloticus
ENSIPUG00000005108	UPF1	100	93.097	ENSOANG00000004568	UPF1	100	92.478	Ornithorhynchus_anatinus
ENSIPUG00000005108	UPF1	100	94.832	ENSORLG00000008453	upf1	100	94.651	Oryzias_latipes
ENSIPUG00000005108	UPF1	100	94.746	ENSORLG00020014758	upf1	100	94.565	Oryzias_latipes_hni
ENSIPUG00000005108	UPF1	100	94.746	ENSORLG00015010165	upf1	100	94.565	Oryzias_latipes_hsok
ENSIPUG00000005108	UPF1	100	94.832	ENSOMEG00000003665	upf1	100	94.651	Oryzias_melastigma
ENSIPUG00000005108	UPF1	100	93.850	ENSOGAG00000012866	UPF1	100	93.494	Otolemur_garnettii
ENSIPUG00000005108	UPF1	96	92.371	ENSOARG00000010739	UPF1	100	91.728	Ovis_aries
ENSIPUG00000005108	UPF1	95	95.157	ENSPPAG00000043884	UPF1	96	94.682	Pan_paniscus
ENSIPUG00000005108	UPF1	100	93.198	ENSPPRG00000023470	UPF1	100	92.845	Panthera_pardus
ENSIPUG00000005108	UPF1	95	93.971	ENSPTIG00000010159	UPF1	99	93.493	Panthera_tigris_altaica
ENSIPUG00000005108	UPF1	100	93.683	ENSPTRG00000010721	UPF1	100	93.327	Pan_troglodytes
ENSIPUG00000005108	UPF1	100	93.683	ENSPANG00000008847	UPF1	100	93.327	Papio_anubis
ENSIPUG00000005108	UPF1	91	97.021	ENSPKIG00000006069	upf1	97	97.021	Paramormyrops_kingsleyae
ENSIPUG00000005108	UPF1	70	94.785	ENSPSIG00000009491	UPF1	100	94.133	Pelodiscus_sinensis
ENSIPUG00000005108	UPF1	100	93.019	ENSPMGG00000017327	upf1	100	93.019	Periophthalmus_magnuspinnatus
ENSIPUG00000005108	UPF1	100	92.902	ENSPEMG00000001085	Upf1	100	92.547	Peromyscus_maniculatus_bairdii
ENSIPUG00000005108	UPF1	100	88.007	ENSPMAG00000001206	upf1	100	87.556	Petromyzon_marinus
ENSIPUG00000005108	UPF1	100	93.934	ENSPCIG00000006156	UPF1	100	93.577	Phascolarctos_cinereus
ENSIPUG00000005108	UPF1	100	92.876	ENSPLAG00000018155	-	100	92.155	Poecilia_latipinna
ENSIPUG00000005108	UPF1	100	93.654	ENSPLAG00000016232	-	100	93.841	Poecilia_latipinna
ENSIPUG00000005108	UPF1	100	93.194	ENSPMEG00000011443	-	100	92.818	Poecilia_mexicana
ENSIPUG00000005108	UPF1	100	93.744	ENSPMEG00000016319	-	100	93.931	Poecilia_mexicana
ENSIPUG00000005108	UPF1	100	92.709	ENSPREG00000009940	upf1	100	92.169	Poecilia_reticulata
ENSIPUG00000005108	UPF1	100	93.472	ENSPREG00000011247	-	100	93.659	Poecilia_reticulata
ENSIPUG00000005108	UPF1	100	88.074	ENSPPYG00000009752	UPF1	100	87.809	Pongo_abelii
ENSIPUG00000005108	UPF1	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSIPUG00000005108	UPF1	100	93.606	ENSPCOG00000023813	UPF1	100	93.250	Propithecus_coquereli
ENSIPUG00000005108	UPF1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSIPUG00000005108	UPF1	100	93.739	ENSPNYG00000003694	upf1	100	94.239	Pundamilia_nyererei
ENSIPUG00000005108	UPF1	100	94.374	ENSPNYG00000016731	-	100	94.828	Pundamilia_nyererei
ENSIPUG00000005108	UPF1	100	99.000	ENSPNAG00000025614	upf1	100	99.000	Pygocentrus_nattereri
ENSIPUG00000005108	UPF1	100	93.554	ENSRNOG00000020134	Upf1	100	93.196	Rattus_norvegicus
ENSIPUG00000005108	UPF1	95	92.783	ENSRBIG00000013894	UPF1	98	95.306	Rhinopithecus_bieti
ENSIPUG00000005108	UPF1	95	95.157	ENSRROG00000040935	UPF1	98	95.306	Rhinopithecus_roxellana
ENSIPUG00000005108	UPF1	73	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSIPUG00000005108	UPF1	95	95.057	ENSSBOG00000023632	UPF1	96	94.582	Saimiri_boliviensis_boliviensis
ENSIPUG00000005108	UPF1	95	94.976	ENSSHAG00000010499	UPF1	100	94.502	Sarcophilus_harrisii
ENSIPUG00000005108	UPF1	100	97.368	ENSSFOG00015021095	upf1	100	97.368	Scleropages_formosus
ENSIPUG00000005108	UPF1	100	95.467	ENSSMAG00000021018	-	100	95.286	Scophthalmus_maximus
ENSIPUG00000005108	UPF1	100	92.460	ENSSMAG00000005055	upf1	100	92.549	Scophthalmus_maximus
ENSIPUG00000005108	UPF1	100	95.286	ENSSDUG00000009629	-	100	95.104	Seriola_dumerili
ENSIPUG00000005108	UPF1	100	93.369	ENSSDUG00000013320	upf1	100	93.996	Seriola_dumerili
ENSIPUG00000005108	UPF1	100	94.213	ENSSLDG00000020868	upf1	100	94.585	Seriola_lalandi_dorsalis
ENSIPUG00000005108	UPF1	100	95.286	ENSSLDG00000006878	-	100	95.104	Seriola_lalandi_dorsalis
ENSIPUG00000005108	UPF1	100	94.250	ENSSPUG00000010538	UPF1	100	93.890	Sphenodon_punctatus
ENSIPUG00000005108	UPF1	100	94.288	ENSSPAG00000011521	-	100	94.379	Stegastes_partitus
ENSIPUG00000005108	UPF1	100	92.747	ENSSPAG00000000003	upf1	100	92.468	Stegastes_partitus
ENSIPUG00000005108	UPF1	100	94.102	ENSSSCG00000039301	UPF1	99	95.502	Sus_scrofa
ENSIPUG00000005108	UPF1	82	88.298	ENSTGUG00000001057	UPF1	100	92.604	Taeniopygia_guttata
ENSIPUG00000005108	UPF1	100	93.909	ENSTRUG00000000150	upf1	100	93.727	Takifugu_rubripes
ENSIPUG00000005108	UPF1	100	94.016	ENSTRUG00000005131	-	100	93.835	Takifugu_rubripes
ENSIPUG00000005108	UPF1	100	90.438	ENSTTRG00000011544	UPF1	100	89.991	Tursiops_truncatus
ENSIPUG00000005108	UPF1	100	93.939	ENSUAMG00000007093	UPF1	100	93.583	Ursus_americanus
ENSIPUG00000005108	UPF1	99	92.280	ENSUMAG00000006652	UPF1	99	96.381	Ursus_maritimus
ENSIPUG00000005108	UPF1	100	93.939	ENSVVUG00000007797	UPF1	100	93.583	Vulpes_vulpes
ENSIPUG00000005108	UPF1	100	80.898	ENSXETG00000013602	upf1	100	80.282	Xenopus_tropicalis
ENSIPUG00000005108	UPF1	97	92.756	ENSXCOG00000015275	-	96	92.763	Xiphophorus_couchianus
ENSIPUG00000005108	UPF1	94	94.482	ENSXCOG00000005764	-	99	94.966	Xiphophorus_couchianus
ENSIPUG00000005108	UPF1	100	92.909	ENSXMAG00000001703	-	100	92.916	Xiphophorus_maculatus
ENSIPUG00000005108	UPF1	100	94.016	ENSXMAG00000002540	-	100	94.470	Xiphophorus_maculatus