EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000005218 (Gene tree)
Gene ID: 108266329
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 34588 bases
Position: chr1:9594327-9628914
Accession: 108266329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000007876	Val_tRNA-synt_C	PF10458.9	5.2e-06	1	1
ENSIPUP00000007802	Val_tRNA-synt_C	PF10458.9	5.4e-06	1	1
ENSIPUP00000007876	tRNA-synt_1g	PF09334.11	8.4e-13	1	1
ENSIPUP00000007802	tRNA-synt_1g	PF09334.11	1.1e-12	1	1
ENSIPUP00000007876	Anticodon_1	PF08264.13	6e-36	1	1
ENSIPUP00000007802	Anticodon_1	PF08264.13	8e-36	1	1
ENSIPUP00000007876	tRNA-synt_1	PF00133.22	6.4e-206	1	1
ENSIPUP00000007802	tRNA-synt_1	PF00133.22	5.4e-205	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000008216	-	3708	-	ENSIPUP00000007876	1235 (aa)	-	-
ENSIPUT00000008140	-	9078	XM_017469453	ENSIPUP00000007802	1271 (aa)	XP_017324942	A0A2D0R2W6

Gene Model

Click here to download ENSIPUG00000005218's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005218's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000005218	vars	79	50.456	ENSIPUG00000015573	Vars2	97	48.378

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005218	vars	100	65.058	ENSG00000204394	VARS	99	72.393	Homo_sapiens
ENSIPUG00000005218	vars	98	80.952	ENSAPOG00000020691	vars	99	79.967	Acanthochromis_polyacanthus
ENSIPUG00000005218	vars	98	80.952	ENSAPOG00000020921	vars	99	79.967	Acanthochromis_polyacanthus
ENSIPUG00000005218	vars	100	65.319	ENSAMEG00000006417	VARS	100	65.319	Ailuropoda_melanoleuca
ENSIPUG00000005218	vars	100	82.408	ENSACIG00000013752	vars	100	82.330	Amphilophus_citrinellus
ENSIPUG00000005218	vars	100	83.934	ENSAOCG00000002447	vars	99	83.229	Amphiprion_ocellaris
ENSIPUG00000005218	vars	100	83.856	ENSAPEG00000010638	vars	99	83.150	Amphiprion_percula
ENSIPUG00000005218	vars	100	81.395	ENSATEG00000020219	vars	100	81.315	Anabas_testudineus
ENSIPUG00000005218	vars	90	71.739	ENSACAG00000029133	-	99	71.565	Anolis_carolinensis
ENSIPUG00000005218	vars	100	65.136	ENSANAG00000015453	VARS	100	65.136	Aotus_nancymaae
ENSIPUG00000005218	vars	100	83.203	ENSACLG00000025699	vars	97	83.125	Astatotilapia_calliptera
ENSIPUG00000005218	vars	95	86.968	ENSAMXG00000017716	vars	96	86.968	Astyanax_mexicanus
ENSIPUG00000005218	vars	100	65.525	ENSBTAG00000005631	VARS	100	65.525	Bos_taurus
ENSIPUG00000005218	vars	100	64.903	ENSCJAG00000002604	VARS	100	64.903	Callithrix_jacchus
ENSIPUG00000005218	vars	100	65.058	ENSCAFG00000000636	VARS	100	65.058	Canis_familiaris
ENSIPUG00000005218	vars	94	66.473	ENSCAFG00020020790	VARS	96	66.473	Canis_lupus_dingo
ENSIPUG00000005218	vars	100	65.370	ENSCHIG00000011008	VARS	100	65.370	Capra_hircus
ENSIPUG00000005218	vars	100	64.747	ENSTSYG00000001567	VARS	100	64.747	Carlito_syrichta
ENSIPUG00000005218	vars	91	68.080	ENSCAPG00000013736	VARS	98	68.080	Cavia_aperea
ENSIPUG00000005218	vars	100	64.436	ENSCPOG00000000870	VARS	100	64.436	Cavia_porcellus
ENSIPUG00000005218	vars	100	65.058	ENSCCAG00000035656	VARS	100	65.058	Cebus_capucinus
ENSIPUG00000005218	vars	100	65.525	ENSCATG00000022394	VARS	100	65.525	Cercocebus_atys
ENSIPUG00000005218	vars	93	63.934	ENSCLAG00000009470	VARS	97	63.934	Chinchilla_lanigera
ENSIPUG00000005218	vars	100	65.292	ENSCSAG00000008784	VARS	100	65.292	Chlorocebus_sabaeus
ENSIPUG00000005218	vars	79	74.540	ENSCPBG00000007943	VARS	96	74.923	Chrysemys_picta_bellii
ENSIPUG00000005218	vars	100	65.447	ENSCANG00000033570	VARS	100	65.447	Colobus_angolensis_palliatus
ENSIPUG00000005218	vars	100	65.214	ENSCGRG00001005686	Vars	100	65.214	Cricetulus_griseus_chok1gshd
ENSIPUG00000005218	vars	93	63.704	ENSCGRG00000013352	Vars	78	63.704	Cricetulus_griseus_crigri
ENSIPUG00000005218	vars	100	79.535	ENSCSEG00000019652	vars	100	79.407	Cynoglossus_semilaevis
ENSIPUG00000005218	vars	100	83.333	ENSCVAG00000022398	vars	100	83.255	Cyprinodon_variegatus
ENSIPUG00000005218	vars	100	86.342	ENSDARG00000044575	vars	100	86.421	Danio_rerio
ENSIPUG00000005218	vars	83	71.265	ENSDORG00000016433	Vars	94	71.265	Dipodomys_ordii
ENSIPUG00000005218	vars	69	74.503	ENSETEG00000003824	VARS	77	74.503	Echinops_telfairi
ENSIPUG00000005218	vars	59	64.521	ENSEBUG00000004637	vars	100	64.609	Eptatretus_burgeri
ENSIPUG00000005218	vars	53	72.000	ENSEBUG00000007086	vars	83	72.000	Eptatretus_burgeri
ENSIPUG00000005218	vars	100	65.759	ENSEASG00005015673	VARS	100	65.759	Equus_asinus_asinus
ENSIPUG00000005218	vars	100	65.708	ENSECAG00000014620	VARS	100	65.708	Equus_caballus
ENSIPUG00000005218	vars	72	72.431	ENSEEUG00000004116	VARS	73	72.431	Erinaceus_europaeus
ENSIPUG00000005218	vars	100	81.470	ENSELUG00000006550	vars	97	81.704	Esox_lucius
ENSIPUG00000005218	vars	100	65.525	ENSFCAG00000004510	VARS	100	65.525	Felis_catus
ENSIPUG00000005218	vars	84	70.289	ENSFDAG00000011401	VARS	100	70.415	Fukomys_damarensis
ENSIPUG00000005218	vars	100	83.255	ENSFHEG00000010672	vars	100	83.177	Fundulus_heteroclitus
ENSIPUG00000005218	vars	100	79.485	ENSGMOG00000014908	vars	100	79.875	Gadus_morhua
ENSIPUG00000005218	vars	100	83.177	ENSGAFG00000021630	vars	100	83.099	Gambusia_affinis
ENSIPUG00000005218	vars	100	80.612	ENSGACG00000009601	vars	100	80.926	Gasterosteus_aculeatus
ENSIPUG00000005218	vars	50	58.216	ENSGAGG00000006508	-	91	62.932	Gopherus_agassizii
ENSIPUG00000005218	vars	100	65.292	ENSGGOG00000011364	VARS	100	65.292	Gorilla_gorilla
ENSIPUG00000005218	vars	100	83.281	ENSHBUG00000017151	vars	97	83.203	Haplochromis_burtoni
ENSIPUG00000005218	vars	100	64.202	ENSHGLG00000011646	VARS	100	64.047	Heterocephalus_glaber_female
ENSIPUG00000005218	vars	93	62.427	ENSHGLG00100018062	VARS	99	62.343	Heterocephalus_glaber_male
ENSIPUG00000005218	vars	99	79.938	ENSHCOG00000012198	vars	99	80.016	Hippocampus_comes
ENSIPUG00000005218	vars	100	65.058	ENSSTOG00000013112	VARS	100	65.058	Ictidomys_tridecemlineatus
ENSIPUG00000005218	vars	100	64.574	ENSJJAG00000019749	-	100	64.230	Jaculus_jaculus
ENSIPUG00000005218	vars	95	54.962	ENSJJAG00000015343	-	100	52.665	Jaculus_jaculus
ENSIPUG00000005218	vars	100	81.191	ENSKMAG00000009455	vars	100	81.583	Kryptolebias_marmoratus
ENSIPUG00000005218	vars	100	81.164	ENSLBEG00000010341	vars	100	81.164	Labrus_bergylta
ENSIPUG00000005218	vars	95	67.132	ENSLACG00000015232	VARS	99	67.214	Latimeria_chalumnae
ENSIPUG00000005218	vars	100	75.059	ENSLOCG00000004240	vars	100	75.373	Lepisosteus_oculatus
ENSIPUG00000005218	vars	100	64.747	ENSLAFG00000023090	VARS	100	64.591	Loxodonta_africana
ENSIPUG00000005218	vars	100	65.370	ENSMFAG00000001032	VARS	100	65.370	Macaca_fascicularis
ENSIPUG00000005218	vars	100	65.370	ENSMMUG00000006828	VARS	100	65.370	Macaca_mulatta
ENSIPUG00000005218	vars	100	65.370	ENSMNEG00000042072	VARS	100	65.370	Macaca_nemestrina
ENSIPUG00000005218	vars	100	65.447	ENSMLEG00000039307	VARS	100	65.447	Mandrillus_leucophaeus
ENSIPUG00000005218	vars	100	83.542	ENSMAMG00000003949	vars	100	83.438	Mastacembelus_armatus
ENSIPUG00000005218	vars	100	83.216	ENSMZEG00005018327	vars	97	83.138	Maylandia_zebra
ENSIPUG00000005218	vars	100	65.292	ENSMAUG00000006715	Vars	100	65.292	Mesocricetus_auratus
ENSIPUG00000005218	vars	100	64.825	ENSMICG00000003548	VARS	100	64.825	Microcebus_murinus
ENSIPUG00000005218	vars	100	63.737	ENSMOCG00000015404	Vars	100	63.737	Microtus_ochrogaster
ENSIPUG00000005218	vars	100	80.914	ENSMMOG00000015801	vars	100	80.513	Mola_mola
ENSIPUG00000005218	vars	100	65.603	ENSMODG00000015204	-	100	65.603	Monodelphis_domestica
ENSIPUG00000005218	vars	99	82.707	ENSMALG00000022532	vars	99	82.629	Monopterus_albus
ENSIPUG00000005218	vars	100	65.681	MGP_CAROLIEiJ_G0021491	Vars	100	65.525	Mus_caroli
ENSIPUG00000005218	vars	100	65.525	ENSMUSG00000007029	Vars	100	65.370	Mus_musculus
ENSIPUG00000005218	vars	100	65.525	MGP_PahariEiJ_G0020486	Vars	100	65.370	Mus_pahari
ENSIPUG00000005218	vars	100	65.603	MGP_SPRETEiJ_G0022396	Vars	100	65.447	Mus_spretus
ENSIPUG00000005218	vars	100	65.214	ENSMPUG00000010821	VARS	100	65.214	Mustela_putorius_furo
ENSIPUG00000005218	vars	78	67.928	ENSMLUG00000013126	VARS	100	67.928	Myotis_lucifugus
ENSIPUG00000005218	vars	100	65.708	ENSNGAG00000012151	Vars	100	65.525	Nannospalax_galili
ENSIPUG00000005218	vars	100	83.203	ENSNBRG00000020520	vars	100	83.125	Neolamprologus_brichardi
ENSIPUG00000005218	vars	100	65.136	ENSNLEG00000006351	VARS	100	65.136	Nomascus_leucogenys
ENSIPUG00000005218	vars	95	71.792	ENSMEUG00000011378	VARS	95	72.133	Notamacropus_eugenii
ENSIPUG00000005218	vars	100	65.447	ENSOPRG00000003607	VARS	100	65.447	Ochotona_princeps
ENSIPUG00000005218	vars	100	64.202	ENSODEG00000017681	VARS	100	64.145	Octodon_degus
ENSIPUG00000005218	vars	100	82.697	ENSONIG00000013064	vars	100	85.690	Oreochromis_niloticus
ENSIPUG00000005218	vars	77	66.784	ENSOANG00000005400	VARS	98	66.548	Ornithorhynchus_anatinus
ENSIPUG00000005218	vars	100	63.891	ENSOCUG00000022463	VARS	100	63.601	Oryctolagus_cuniculus
ENSIPUG00000005218	vars	100	82.115	ENSORLG00000013063	vars	100	82.115	Oryzias_latipes
ENSIPUG00000005218	vars	100	82.812	ENSORLG00020003504	vars	100	82.734	Oryzias_latipes_hni
ENSIPUG00000005218	vars	100	83.112	ENSORLG00015009001	vars	100	83.034	Oryzias_latipes_hsok
ENSIPUG00000005218	vars	100	82.721	ENSOMEG00000015016	vars	100	82.643	Oryzias_melastigma
ENSIPUG00000005218	vars	100	64.747	ENSOGAG00000007515	VARS	100	64.747	Otolemur_garnettii
ENSIPUG00000005218	vars	100	65.214	ENSPPAG00000034012	VARS	100	65.214	Pan_paniscus
ENSIPUG00000005218	vars	100	65.681	ENSPPRG00000014855	VARS	100	65.681	Panthera_pardus
ENSIPUG00000005218	vars	85	70.129	ENSPTIG00000010462	VARS	95	69.210	Panthera_tigris_altaica
ENSIPUG00000005218	vars	100	65.214	ENSPTRG00000017985	VARS	100	65.214	Pan_troglodytes
ENSIPUG00000005218	vars	100	63.960	ENSPANG00000014565	VARS	100	63.960	Papio_anubis
ENSIPUG00000005218	vars	100	81.825	ENSPKIG00000016304	vars	100	81.981	Paramormyrops_kingsleyae
ENSIPUG00000005218	vars	100	81.386	ENSPMGG00000023909	vars	100	81.386	Periophthalmus_magnuspinnatus
ENSIPUG00000005218	vars	100	64.981	ENSPEMG00000006639	Vars	100	64.981	Peromyscus_maniculatus_bairdii
ENSIPUG00000005218	vars	100	64.825	ENSPCIG00000018553	VARS	100	64.825	Phascolarctos_cinereus
ENSIPUG00000005218	vars	100	83.725	ENSPFOG00000015690	vars	100	83.646	Poecilia_formosa
ENSIPUG00000005218	vars	100	83.646	ENSPLAG00000009590	vars	100	83.568	Poecilia_latipinna
ENSIPUG00000005218	vars	100	83.725	ENSPMEG00000004708	vars	100	83.646	Poecilia_mexicana
ENSIPUG00000005218	vars	100	80.016	ENSPREG00000013264	vars	99	88.090	Poecilia_reticulata
ENSIPUG00000005218	vars	100	63.813	ENSPPYG00000016460	VARS	100	63.813	Pongo_abelii
ENSIPUG00000005218	vars	86	67.794	ENSPCAG00000013565	VARS	86	67.794	Procavia_capensis
ENSIPUG00000005218	vars	100	65.008	ENSPCOG00000010942	VARS	100	65.008	Propithecus_coquereli
ENSIPUG00000005218	vars	100	62.879	ENSPVAG00000012403	VARS	100	62.879	Pteropus_vampyrus
ENSIPUG00000005218	vars	100	83.359	ENSPNYG00000022511	vars	100	83.281	Pundamilia_nyererei
ENSIPUG00000005218	vars	100	88.226	ENSPNAG00000020962	vars	100	88.226	Pygocentrus_nattereri
ENSIPUG00000005218	vars	100	65.292	ENSRNOG00000000867	Vars	100	65.292	Rattus_norvegicus
ENSIPUG00000005218	vars	100	65.370	ENSRBIG00000041669	VARS	100	65.370	Rhinopithecus_bieti
ENSIPUG00000005218	vars	100	65.370	ENSRROG00000045490	VARS	100	65.370	Rhinopithecus_roxellana
ENSIPUG00000005218	vars	100	64.903	ENSSBOG00000035402	VARS	100	64.903	Saimiri_boliviensis_boliviensis
ENSIPUG00000005218	vars	100	64.441	ENSSHAG00000006937	VARS	100	64.779	Sarcophilus_harrisii
ENSIPUG00000005218	vars	100	80.938	ENSSFOG00015014272	vars	100	81.250	Scleropages_formosus
ENSIPUG00000005218	vars	100	81.783	ENSSMAG00000009596	vars	99	82.017	Scophthalmus_maximus
ENSIPUG00000005218	vars	100	84.519	ENSSDUG00000014177	vars	100	84.441	Seriola_dumerili
ENSIPUG00000005218	vars	100	84.441	ENSSLDG00000025316	vars	100	84.363	Seriola_lalandi_dorsalis
ENSIPUG00000005218	vars	100	83.464	ENSSPAG00000017068	vars	100	82.799	Stegastes_partitus
ENSIPUG00000005218	vars	100	65.008	ENSSSCG00000038950	VARS	100	65.008	Sus_scrofa
ENSIPUG00000005218	vars	80	79.423	ENSTRUG00000012307	vars	97	79.307	Takifugu_rubripes
ENSIPUG00000005218	vars	100	81.221	ENSTNIG00000008011	vars	100	81.142	Tetraodon_nigroviridis
ENSIPUG00000005218	vars	100	59.685	ENSTTRG00000014128	VARS	100	59.685	Tursiops_truncatus
ENSIPUG00000005218	vars	100	63.608	ENSUAMG00000010424	VARS	100	63.658	Ursus_americanus
ENSIPUG00000005218	vars	100	60.545	ENSUMAG00000013486	VARS	100	60.623	Ursus_maritimus
ENSIPUG00000005218	vars	100	65.290	ENSVVUG00000021323	VARS	100	65.290	Vulpes_vulpes
ENSIPUG00000005218	vars	100	63.969	ENSXETG00000024076	vars	100	64.019	Xenopus_tropicalis
ENSIPUG00000005218	vars	100	81.519	ENSXCOG00000019172	vars	100	81.441	Xiphophorus_couchianus
ENSIPUG00000005218	vars	100	83.255	ENSXMAG00000010927	vars	100	83.177	Xiphophorus_maculatus