EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000005229 (Gene tree)
Gene ID: 108263684
Gene Symbol: SMARCA5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 18184 bases
Position: chr3:5962526-5980709
Accession: 108263684
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000007784	ResIII	PF04851.15	1e-10	1	1
ENSIPUP00000007744	ResIII	PF04851.15	1.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000008121	-	3754	-	ENSIPUP00000007784	1009 (aa)	-	-
ENSIPUT00000008080	-	3804	XM_017464729	ENSIPUP00000007744	1029 (aa)	XP_017320218	W5UKN3
ENSIPUT00000008016	-	3273	-	ENSIPUP00000007682	1090 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000005229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005229's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000005229	SMARCA5	99	82.224	ENSIPUG00000016905	Smarca1	99	84.292
ENSIPUG00000005229	SMARCA5	51	46.360	ENSIPUG00000002634	HELLS	70	41.356
ENSIPUG00000005229	SMARCA5	54	43.934	ENSIPUG00000022617	chd1l	53	43.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005229	SMARCA5	97	82.657	ENSG00000102038	SMARCA1	97	80.607	Homo_sapiens
ENSIPUG00000005229	SMARCA5	96	95.277	ENSAPOG00000016035	smarca5	99	94.771	Acanthochromis_polyacanthus
ENSIPUG00000005229	SMARCA5	97	81.764	ENSAMEG00000015218	SMARCA1	97	79.864	Ailuropoda_melanoleuca
ENSIPUG00000005229	SMARCA5	89	94.895	ENSACIG00000016982	smarca5	99	95.078	Amphilophus_citrinellus
ENSIPUG00000005229	SMARCA5	96	95.277	ENSAOCG00000015578	smarca5	100	91.128	Amphiprion_ocellaris
ENSIPUG00000005229	SMARCA5	96	95.277	ENSAPEG00000011117	smarca5	99	95.390	Amphiprion_percula
ENSIPUG00000005229	SMARCA5	99	93.413	ENSATEG00000012894	smarca5	100	90.935	Anabas_testudineus
ENSIPUG00000005229	SMARCA5	96	84.923	ENSAPLG00000013149	SMARCA1	99	84.923	Anas_platyrhynchos
ENSIPUG00000005229	SMARCA5	98	85.020	ENSACAG00000011376	SMARCA1	97	83.104	Anolis_carolinensis
ENSIPUG00000005229	SMARCA5	97	77.992	ENSANAG00000023098	SMARCA1	98	75.702	Aotus_nancymaae
ENSIPUG00000005229	SMARCA5	99	93.413	ENSACLG00000025356	smarca5	100	91.128	Astatotilapia_calliptera
ENSIPUG00000005229	SMARCA5	92	84.855	ENSAMXG00000011227	smarca1	99	85.667	Astyanax_mexicanus
ENSIPUG00000005229	SMARCA5	99	96.500	ENSAMXG00000005709	smarca5	100	94.112	Astyanax_mexicanus
ENSIPUG00000005229	SMARCA5	97	82.653	ENSBTAG00000002292	SMARCA1	94	81.320	Bos_taurus
ENSIPUG00000005229	SMARCA5	97	63.226	WBGene00002169	isw-1	97	62.638	Caenorhabditis_elegans
ENSIPUG00000005229	SMARCA5	97	82.657	ENSCJAG00000002868	SMARCA1	97	80.607	Callithrix_jacchus
ENSIPUG00000005229	SMARCA5	97	73.280	ENSCAFG00000018673	SMARCA1	99	74.441	Canis_familiaris
ENSIPUG00000005229	SMARCA5	97	82.759	ENSCAFG00020001751	SMARCA1	97	80.705	Canis_lupus_dingo
ENSIPUG00000005229	SMARCA5	97	82.353	ENSCHIG00000009837	SMARCA1	96	80.648	Capra_hircus
ENSIPUG00000005229	SMARCA5	99	80.569	ENSTSYG00000004240	SMARCA1	94	84.362	Carlito_syrichta
ENSIPUG00000005229	SMARCA5	97	81.653	ENSCPOG00000013601	SMARCA1	96	80.157	Cavia_porcellus
ENSIPUG00000005229	SMARCA5	97	79.919	ENSCCAG00000030817	SMARCA1	96	78.458	Cebus_capucinus
ENSIPUG00000005229	SMARCA5	95	83.784	ENSCATG00000015921	SMARCA1	97	79.671	Cercocebus_atys
ENSIPUG00000005229	SMARCA5	97	82.150	ENSCLAG00000002171	SMARCA1	97	80.118	Chinchilla_lanigera
ENSIPUG00000005229	SMARCA5	97	82.657	ENSCSAG00000008460	SMARCA1	97	80.607	Chlorocebus_sabaeus
ENSIPUG00000005229	SMARCA5	98	84.312	ENSCPBG00000001146	SMARCA1	93	84.312	Chrysemys_picta_bellii
ENSIPUG00000005229	SMARCA5	98	74.372	ENSCING00000004110	swi/snf	98	74.372	Ciona_intestinalis
ENSIPUG00000005229	SMARCA5	99	72.512	ENSCSAVG00000004620	-	99	75.615	Ciona_savignyi
ENSIPUG00000005229	SMARCA5	97	82.759	ENSCANG00000007183	SMARCA1	97	80.705	Colobus_angolensis_palliatus
ENSIPUG00000005229	SMARCA5	98	81.463	ENSCGRG00001010776	Smarca1	96	80.830	Cricetulus_griseus_chok1gshd
ENSIPUG00000005229	SMARCA5	96	81.440	ENSCGRG00000015301	Smarca1	97	81.668	Cricetulus_griseus_crigri
ENSIPUG00000005229	SMARCA5	99	91.471	ENSCSEG00000000328	smarca5	100	90.435	Cynoglossus_semilaevis
ENSIPUG00000005229	SMARCA5	99	92.415	ENSCVAG00000008668	smarca5	99	94.333	Cyprinodon_variegatus
ENSIPUG00000005229	SMARCA5	99	95.400	ENSDARG00000052348	smarca5	100	93.243	Danio_rerio
ENSIPUG00000005229	SMARCA5	98	81.998	ENSDARG00000012776	smarca1	99	80.810	Danio_rerio
ENSIPUG00000005229	SMARCA5	97	82.197	ENSDNOG00000004315	SMARCA1	95	81.568	Dasypus_novemcinctus
ENSIPUG00000005229	SMARCA5	95	83.992	ENSDORG00000009270	Smarca1	95	80.962	Dipodomys_ordii
ENSIPUG00000005229	SMARCA5	95	75.542	FBgn0011604	Iswi	95	75.380	Drosophila_melanogaster
ENSIPUG00000005229	SMARCA5	80	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSIPUG00000005229	SMARCA5	98	81.947	ENSEBUG00000001239	smarca5	97	81.947	Eptatretus_burgeri
ENSIPUG00000005229	SMARCA5	97	78.384	ENSEASG00005008218	SMARCA1	95	81.517	Equus_asinus_asinus
ENSIPUG00000005229	SMARCA5	97	82.657	ENSECAG00000012106	SMARCA1	96	80.943	Equus_caballus
ENSIPUG00000005229	SMARCA5	78	83.113	ENSEEUG00000014927	SMARCA1	80	83.113	Erinaceus_europaeus
ENSIPUG00000005229	SMARCA5	99	82.289	ENSELUG00000010515	smarca1	99	82.340	Esox_lucius
ENSIPUG00000005229	SMARCA5	97	82.657	ENSFCAG00000018496	SMARCA1	98	79.119	Felis_catus
ENSIPUG00000005229	SMARCA5	90	85.980	ENSFALG00000000209	SMARCA1	98	85.980	Ficedula_albicollis
ENSIPUG00000005229	SMARCA5	95	82.341	ENSFDAG00000009818	SMARCA1	94	82.586	Fukomys_damarensis
ENSIPUG00000005229	SMARCA5	99	92.315	ENSFHEG00000007687	smarca5	100	89.027	Fundulus_heteroclitus
ENSIPUG00000005229	SMARCA5	95	84.647	ENSGALG00000008431	SMARCA1	97	83.486	Gallus_gallus
ENSIPUG00000005229	SMARCA5	99	92.223	ENSGAFG00000017731	smarca5	100	90.541	Gambusia_affinis
ENSIPUG00000005229	SMARCA5	96	85.067	ENSGAGG00000023575	SMARCA1	99	85.067	Gopherus_agassizii
ENSIPUG00000005229	SMARCA5	70	96.000	ENSGGOG00000012841	-	98	75.829	Gorilla_gorilla
ENSIPUG00000005229	SMARCA5	97	81.947	ENSHGLG00000003080	SMARCA1	97	79.922	Heterocephalus_glaber_female
ENSIPUG00000005229	SMARCA5	97	81.452	ENSHGLG00100001102	SMARCA1	99	81.452	Heterocephalus_glaber_male
ENSIPUG00000005229	SMARCA5	99	93.413	ENSHCOG00000005458	smarca5	100	91.418	Hippocampus_comes
ENSIPUG00000005229	SMARCA5	97	82.556	ENSSTOG00000014524	SMARCA1	99	80.591	Ictidomys_tridecemlineatus
ENSIPUG00000005229	SMARCA5	96	82.041	ENSJJAG00000002593	Smarca1	92	82.041	Jaculus_jaculus
ENSIPUG00000005229	SMARCA5	99	91.782	ENSKMAG00000003777	smarca5	100	90.164	Kryptolebias_marmoratus
ENSIPUG00000005229	SMARCA5	93	93.220	ENSLBEG00000013295	SMARCA1	100	95.443	Labrus_bergylta
ENSIPUG00000005229	SMARCA5	99	93.114	ENSLBEG00000018112	smarca5	100	90.839	Labrus_bergylta
ENSIPUG00000005229	SMARCA5	97	85.336	ENSLACG00000016697	SMARCA1	97	85.336	Latimeria_chalumnae
ENSIPUG00000005229	SMARCA5	98	85.137	ENSLOCG00000014591	smarca1	99	82.302	Lepisosteus_oculatus
ENSIPUG00000005229	SMARCA5	97	81.754	ENSLAFG00000000896	SMARCA1	99	81.754	Loxodonta_africana
ENSIPUG00000005229	SMARCA5	97	82.657	ENSMFAG00000002117	SMARCA1	94	83.878	Macaca_fascicularis
ENSIPUG00000005229	SMARCA5	95	83.784	ENSMMUG00000008818	SMARCA1	98	84.132	Macaca_mulatta
ENSIPUG00000005229	SMARCA5	95	83.784	ENSMNEG00000041768	SMARCA1	94	83.878	Macaca_nemestrina
ENSIPUG00000005229	SMARCA5	97	82.657	ENSMLEG00000043198	SMARCA1	97	80.607	Mandrillus_leucophaeus
ENSIPUG00000005229	SMARCA5	99	92.270	ENSMAMG00000014294	smarca5	100	90.288	Mastacembelus_armatus
ENSIPUG00000005229	SMARCA5	99	93.413	ENSMZEG00005009369	smarca5	100	91.128	Maylandia_zebra
ENSIPUG00000005229	SMARCA5	98	83.200	ENSMGAG00000007042	SMARCA1	99	83.200	Meleagris_gallopavo
ENSIPUG00000005229	SMARCA5	95	82.420	ENSMAUG00000008133	Smarca1	94	80.750	Mesocricetus_auratus
ENSIPUG00000005229	SMARCA5	97	82.961	ENSMICG00000015768	SMARCA1	97	80.252	Microcebus_murinus
ENSIPUG00000005229	SMARCA5	96	82.041	ENSMOCG00000009464	Smarca1	97	79.435	Microtus_ochrogaster
ENSIPUG00000005229	SMARCA5	99	92.377	ENSMMOG00000005547	smarca5	99	92.377	Mola_mola
ENSIPUG00000005229	SMARCA5	100	81.081	ENSMODG00000013187	-	99	81.081	Monodelphis_domestica
ENSIPUG00000005229	SMARCA5	96	94.867	ENSMALG00000002081	smarca5	100	90.803	Monopterus_albus
ENSIPUG00000005229	SMARCA5	97	81.534	MGP_CAROLIEiJ_G0033034	Smarca1	98	78.805	Mus_caroli
ENSIPUG00000005229	SMARCA5	97	81.534	ENSMUSG00000031099	Smarca1	98	78.902	Mus_musculus
ENSIPUG00000005229	SMARCA5	97	81.809	MGP_PahariEiJ_G0031579	Smarca1	96	80.180	Mus_pahari
ENSIPUG00000005229	SMARCA5	97	81.534	MGP_SPRETEiJ_G0034192	Smarca1	98	78.902	Mus_spretus
ENSIPUG00000005229	SMARCA5	97	81.764	ENSMPUG00000017423	SMARCA1	91	79.768	Mustela_putorius_furo
ENSIPUG00000005229	SMARCA5	96	81.092	ENSMLUG00000029614	SMARCA1	96	78.198	Myotis_lucifugus
ENSIPUG00000005229	SMARCA5	95	82.834	ENSNGAG00000006492	Smarca1	94	81.155	Nannospalax_galili
ENSIPUG00000005229	SMARCA5	99	93.769	ENSNBRG00000004463	smarca5	99	93.769	Neolamprologus_brichardi
ENSIPUG00000005229	SMARCA5	97	80.962	ENSNLEG00000015179	SMARCA1	95	83.158	Nomascus_leucogenys
ENSIPUG00000005229	SMARCA5	92	75.448	ENSMEUG00000008819	SMARCA1	99	75.448	Notamacropus_eugenii
ENSIPUG00000005229	SMARCA5	95	82.238	ENSODEG00000012163	SMARCA1	95	79.701	Octodon_degus
ENSIPUG00000005229	SMARCA5	99	93.313	ENSONIG00000009993	smarca5	100	91.032	Oreochromis_niloticus
ENSIPUG00000005229	SMARCA5	96	85.170	ENSOANG00000002862	SMARCA1	99	85.170	Ornithorhynchus_anatinus
ENSIPUG00000005229	SMARCA5	97	82.556	ENSOCUG00000001047	SMARCA1	97	80.509	Oryctolagus_cuniculus
ENSIPUG00000005229	SMARCA5	99	92.814	ENSORLG00000021998	smarca5	100	90.048	Oryzias_latipes
ENSIPUG00000005229	SMARCA5	99	92.537	ENSORLG00020017679	smarca5	98	91.732	Oryzias_latipes_hni
ENSIPUG00000005229	SMARCA5	99	92.814	ENSORLG00015017210	smarca5	100	90.385	Oryzias_latipes_hsok
ENSIPUG00000005229	SMARCA5	99	92.814	ENSOMEG00000000086	smarca5	100	90.462	Oryzias_melastigma
ENSIPUG00000005229	SMARCA5	95	83.248	ENSOGAG00000004399	SMARCA1	94	81.288	Otolemur_garnettii
ENSIPUG00000005229	SMARCA5	96	82.974	ENSOARG00000014638	SMARCA1	99	82.974	Ovis_aries
ENSIPUG00000005229	SMARCA5	97	82.657	ENSPPAG00000034647	SMARCA1	97	80.607	Pan_paniscus
ENSIPUG00000005229	SMARCA5	97	82.759	ENSPPRG00000008929	SMARCA1	98	79.215	Panthera_pardus
ENSIPUG00000005229	SMARCA5	97	80.957	ENSPTIG00000000915	SMARCA1	97	80.957	Panthera_tigris_altaica
ENSIPUG00000005229	SMARCA5	97	82.657	ENSPTRG00000049876	SMARCA1	97	79.671	Pan_troglodytes
ENSIPUG00000005229	SMARCA5	97	82.657	ENSPANG00000003871	SMARCA1	97	80.607	Papio_anubis
ENSIPUG00000005229	SMARCA5	97	81.957	ENSPKIG00000013411	smarca1	99	81.957	Paramormyrops_kingsleyae
ENSIPUG00000005229	SMARCA5	98	83.400	ENSPSIG00000010101	SMARCA1	99	85.067	Pelodiscus_sinensis
ENSIPUG00000005229	SMARCA5	95	82.627	ENSPEMG00000017503	Smarca1	94	80.851	Peromyscus_maniculatus_bairdii
ENSIPUG00000005229	SMARCA5	99	82.690	ENSPCIG00000015460	SMARCA1	99	82.690	Phascolarctos_cinereus
ENSIPUG00000005229	SMARCA5	96	94.353	ENSPFOG00000007649	smarca5	100	90.251	Poecilia_formosa
ENSIPUG00000005229	SMARCA5	96	94.353	ENSPLAG00000003363	smarca5	100	90.251	Poecilia_latipinna
ENSIPUG00000005229	SMARCA5	96	94.456	ENSPMEG00000019849	smarca5	100	90.347	Poecilia_mexicana
ENSIPUG00000005229	SMARCA5	96	94.456	ENSPREG00000023250	smarca5	100	90.347	Poecilia_reticulata
ENSIPUG00000005229	SMARCA5	97	79.817	ENSPPYG00000020703	SMARCA1	96	78.360	Pongo_abelii
ENSIPUG00000005229	SMARCA5	77	76.203	ENSPCOG00000020722	SMARCA1	94	80.000	Propithecus_coquereli
ENSIPUG00000005229	SMARCA5	89	83.204	ENSPVAG00000003805	SMARCA1	90	83.421	Pteropus_vampyrus
ENSIPUG00000005229	SMARCA5	60	93.304	ENSPNYG00000012299	smarca5	92	93.578	Pundamilia_nyererei
ENSIPUG00000005229	SMARCA5	96	82.462	ENSRNOG00000003762	Smarca1	92	82.462	Rattus_norvegicus
ENSIPUG00000005229	SMARCA5	97	82.759	ENSRROG00000034167	SMARCA1	97	80.705	Rhinopithecus_roxellana
ENSIPUG00000005229	SMARCA5	96	83.179	ENSSBOG00000020641	SMARCA1	99	83.179	Saimiri_boliviensis_boliviensis
ENSIPUG00000005229	SMARCA5	96	80.433	ENSSHAG00000013518	SMARCA1	99	80.433	Sarcophilus_harrisii
ENSIPUG00000005229	SMARCA5	98	84.631	ENSSFOG00015009043	smarca1	99	83.136	Scleropages_formosus
ENSIPUG00000005229	SMARCA5	98	93.706	ENSSFOG00015016794	smarca5	100	94.530	Scleropages_formosus
ENSIPUG00000005229	SMARCA5	99	92.914	ENSSMAG00000004801	smarca5	100	90.865	Scophthalmus_maximus
ENSIPUG00000005229	SMARCA5	99	92.942	ENSSDUG00000020690	smarca5	100	91.191	Seriola_dumerili
ENSIPUG00000005229	SMARCA5	99	92.942	ENSSLDG00000025190	smarca5	100	91.191	Seriola_lalandi_dorsalis
ENSIPUG00000005229	SMARCA5	80	83.986	ENSSARG00000000842	SMARCA1	81	83.986	Sorex_araneus
ENSIPUG00000005229	SMARCA5	95	84.544	ENSSPUG00000000590	SMARCA1	95	83.418	Sphenodon_punctatus
ENSIPUG00000005229	SMARCA5	99	93.413	ENSSPAG00000002894	smarca5	97	94.662	Stegastes_partitus
ENSIPUG00000005229	SMARCA5	96	82.869	ENSSSCG00000012649	SMARCA1	98	80.278	Sus_scrofa
ENSIPUG00000005229	SMARCA5	96	84.821	ENSTGUG00000003899	-	99	84.821	Taeniopygia_guttata
ENSIPUG00000005229	SMARCA5	99	92.715	ENSTRUG00000014094	smarca5	100	89.971	Takifugu_rubripes
ENSIPUG00000005229	SMARCA5	100	90.828	ENSTNIG00000017717	smarca5	97	90.828	Tetraodon_nigroviridis
ENSIPUG00000005229	SMARCA5	88	82.353	ENSTBEG00000014973	SMARCA1	89	82.619	Tupaia_belangeri
ENSIPUG00000005229	SMARCA5	95	79.324	ENSTTRG00000006168	SMARCA1	97	79.418	Tursiops_truncatus
ENSIPUG00000005229	SMARCA5	96	83.179	ENSUAMG00000020201	SMARCA1	97	80.509	Ursus_americanus
ENSIPUG00000005229	SMARCA5	97	79.184	ENSUMAG00000004073	SMARCA1	97	83.942	Ursus_maritimus
ENSIPUG00000005229	SMARCA5	75	86.184	ENSVPAG00000010492	-	77	87.197	Vicugna_pacos
ENSIPUG00000005229	SMARCA5	97	82.759	ENSVVUG00000008878	SMARCA1	98	84.829	Vulpes_vulpes
ENSIPUG00000005229	SMARCA5	97	84.045	ENSXETG00000001526	smarca1	99	84.045	Xenopus_tropicalis
ENSIPUG00000005229	SMARCA5	99	92.223	ENSXCOG00000011170	smarca5	99	92.515	Xiphophorus_couchianus
ENSIPUG00000005229	SMARCA5	99	92.223	ENSXMAG00000009678	smarca5	98	94.323	Xiphophorus_maculatus