EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000005368 (Gene tree)
Gene ID: 108271207
Gene Symbol: Lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 6394 bases
Position: chr10:20894837-20901230
Accession: 108271207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000007808	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000008147	-	1859	XM_017478603	ENSIPUP00000007808	142 (aa)	XP_017334092	W5UFL1

Gene Model

Click here to download ENSIPUG00000005368's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005368's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000005368	Lsm4	68	32.000	ENSIPUG00000010539	lsm2	100	32.000
ENSIPUG00000005368	Lsm4	51	34.722	ENSIPUG00000003083	snrpd3	74	32.039

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005368	Lsm4	62	98.864	ENSG00000130520	LSM4	99	84.058	Homo_sapiens
ENSIPUG00000005368	Lsm4	100	84.868	ENSAPOG00000005643	lsm4	100	85.526	Acanthochromis_polyacanthus
ENSIPUG00000005368	Lsm4	61	98.851	ENSAMEG00000011162	LSM4	93	83.942	Ailuropoda_melanoleuca
ENSIPUG00000005368	Lsm4	100	79.054	ENSAOCG00000006414	lsm4	100	87.248	Amphiprion_ocellaris
ENSIPUG00000005368	Lsm4	100	86.000	ENSAPEG00000006238	lsm4	100	86.667	Amphiprion_percula
ENSIPUG00000005368	Lsm4	100	84.967	ENSATEG00000016559	lsm4	100	85.621	Anabas_testudineus
ENSIPUG00000005368	Lsm4	62	98.864	ENSANAG00000034659	LSM4	99	84.058	Aotus_nancymaae
ENSIPUG00000005368	Lsm4	100	85.811	ENSACLG00000022738	lsm4	100	86.486	Astatotilapia_calliptera
ENSIPUG00000005368	Lsm4	100	97.183	ENSAMXG00000016932	lsm4	100	97.183	Astyanax_mexicanus
ENSIPUG00000005368	Lsm4	62	98.864	ENSBTAG00000008578	LSM4	99	84.058	Bos_taurus
ENSIPUG00000005368	Lsm4	58	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSIPUG00000005368	Lsm4	62	98.864	ENSCJAG00000014171	LSM4	99	84.058	Callithrix_jacchus
ENSIPUG00000005368	Lsm4	62	98.864	ENSCAFG00000014900	LSM4	90	81.159	Canis_familiaris
ENSIPUG00000005368	Lsm4	62	98.864	ENSCAFG00020012137	LSM4	99	84.058	Canis_lupus_dingo
ENSIPUG00000005368	Lsm4	61	98.851	ENSCHIG00000010928	LSM4	90	81.022	Capra_hircus
ENSIPUG00000005368	Lsm4	62	97.727	ENSTSYG00000030906	LSM4	99	83.333	Carlito_syrichta
ENSIPUG00000005368	Lsm4	62	97.727	ENSCAPG00000014140	LSM4	99	80.714	Cavia_aperea
ENSIPUG00000005368	Lsm4	62	97.727	ENSCPOG00000024117	LSM4	99	80.714	Cavia_porcellus
ENSIPUG00000005368	Lsm4	62	98.864	ENSCCAG00000036308	LSM4	99	84.058	Cebus_capucinus
ENSIPUG00000005368	Lsm4	62	98.864	ENSCATG00000029311	LSM4	99	84.058	Cercocebus_atys
ENSIPUG00000005368	Lsm4	96	83.212	ENSCLAG00000010828	LSM4	99	80.435	Chinchilla_lanigera
ENSIPUG00000005368	Lsm4	62	98.864	ENSCSAG00000005370	LSM4	99	84.058	Chlorocebus_sabaeus
ENSIPUG00000005368	Lsm4	94	91.791	ENSCPBG00000012925	LSM4	96	91.791	Chrysemys_picta_bellii
ENSIPUG00000005368	Lsm4	61	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSIPUG00000005368	Lsm4	61	93.023	ENSCSAVG00000008596	-	74	92.391	Ciona_savignyi
ENSIPUG00000005368	Lsm4	62	98.864	ENSCANG00000043686	LSM4	99	84.058	Colobus_angolensis_palliatus
ENSIPUG00000005368	Lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	81.159	Cricetulus_griseus_chok1gshd
ENSIPUG00000005368	Lsm4	61	95.402	ENSCGRG00000009398	Lsm4	99	78.102	Cricetulus_griseus_crigri
ENSIPUG00000005368	Lsm4	100	83.803	ENSCSEG00000016127	lsm4	100	91.608	Cynoglossus_semilaevis
ENSIPUG00000005368	Lsm4	89	88.372	ENSCVAG00000021828	lsm4	98	89.147	Cyprinodon_variegatus
ENSIPUG00000005368	Lsm4	100	89.583	ENSCVAG00000010601	lsm4	100	90.278	Cyprinodon_variegatus
ENSIPUG00000005368	Lsm4	96	91.549	ENSDARG00000023852	lsm4	99	90.845	Danio_rerio
ENSIPUG00000005368	Lsm4	96	82.482	ENSDORG00000024225	Lsm4	99	78.986	Dipodomys_ordii
ENSIPUG00000005368	Lsm4	68	82.474	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSIPUG00000005368	Lsm4	51	97.260	ENSETEG00000007762	-	98	77.236	Echinops_telfairi
ENSIPUG00000005368	Lsm4	53	93.333	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSIPUG00000005368	Lsm4	62	98.864	ENSECAG00000010141	LSM4	56	81.159	Equus_caballus
ENSIPUG00000005368	Lsm4	93	93.985	ENSELUG00000012821	lsm4	100	89.474	Esox_lucius
ENSIPUG00000005368	Lsm4	62	98.864	ENSFCAG00000040580	LSM4	99	84.058	Felis_catus
ENSIPUG00000005368	Lsm4	94	90.977	ENSFALG00000009478	LSM4	96	90.977	Ficedula_albicollis
ENSIPUG00000005368	Lsm4	61	98.851	ENSFDAG00000010124	LSM4	99	80.292	Fukomys_damarensis
ENSIPUG00000005368	Lsm4	99	81.757	ENSGMOG00000007729	lsm4	99	81.633	Gadus_morhua
ENSIPUG00000005368	Lsm4	94	91.045	ENSGALG00000003385	LSM4	96	91.045	Gallus_gallus
ENSIPUG00000005368	Lsm4	100	90.972	ENSGAFG00000004903	lsm4	97	86.047	Gambusia_affinis
ENSIPUG00000005368	Lsm4	100	76.667	ENSGACG00000008140	lsm4	100	86.000	Gasterosteus_aculeatus
ENSIPUG00000005368	Lsm4	94	91.791	ENSGAGG00000017812	LSM4	96	91.791	Gopherus_agassizii
ENSIPUG00000005368	Lsm4	62	98.864	ENSGGOG00000012914	-	99	84.058	Gorilla_gorilla
ENSIPUG00000005368	Lsm4	100	86.395	ENSHBUG00000008858	lsm4	80	87.075	Haplochromis_burtoni
ENSIPUG00000005368	Lsm4	96	79.710	ENSHGLG00000006568	LSM4	99	79.710	Heterocephalus_glaber_female
ENSIPUG00000005368	Lsm4	65	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSIPUG00000005368	Lsm4	100	90.210	ENSHCOG00000008819	lsm4	100	90.210	Hippocampus_comes
ENSIPUG00000005368	Lsm4	62	98.864	ENSSTOG00000016494	LSM4	99	84.058	Ictidomys_tridecemlineatus
ENSIPUG00000005368	Lsm4	62	96.591	ENSJJAG00000017420	Lsm4	99	81.884	Jaculus_jaculus
ENSIPUG00000005368	Lsm4	100	87.586	ENSKMAG00000005073	lsm4	100	88.966	Kryptolebias_marmoratus
ENSIPUG00000005368	Lsm4	100	86.000	ENSLBEG00000027930	lsm4	100	86.667	Labrus_bergylta
ENSIPUG00000005368	Lsm4	96	85.507	ENSLACG00000015861	LSM4	99	89.286	Latimeria_chalumnae
ENSIPUG00000005368	Lsm4	100	94.366	ENSLOCG00000002025	lsm4	100	94.366	Lepisosteus_oculatus
ENSIPUG00000005368	Lsm4	61	97.701	ENSLAFG00000017459	LSM4	98	83.212	Loxodonta_africana
ENSIPUG00000005368	Lsm4	62	98.864	ENSMFAG00000031194	LSM4	99	84.058	Macaca_fascicularis
ENSIPUG00000005368	Lsm4	62	98.864	ENSMMUG00000004405	LSM4	99	84.058	Macaca_mulatta
ENSIPUG00000005368	Lsm4	62	98.864	ENSMNEG00000042899	LSM4	99	84.058	Macaca_nemestrina
ENSIPUG00000005368	Lsm4	62	98.864	ENSMLEG00000027948	LSM4	99	84.058	Mandrillus_leucophaeus
ENSIPUG00000005368	Lsm4	100	90.210	ENSMAMG00000006190	lsm4	100	90.210	Mastacembelus_armatus
ENSIPUG00000005368	Lsm4	100	86.395	ENSMZEG00005016420	lsm4	100	87.075	Maylandia_zebra
ENSIPUG00000005368	Lsm4	94	84.328	ENSMGAG00000004976	LSM4	96	88.060	Meleagris_gallopavo
ENSIPUG00000005368	Lsm4	70	95.960	ENSMICG00000000222	LSM4	99	83.333	Microcebus_murinus
ENSIPUG00000005368	Lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	81.884	Microtus_ochrogaster
ENSIPUG00000005368	Lsm4	51	100.000	ENSMODG00000015044	-	98	82.927	Monodelphis_domestica
ENSIPUG00000005368	Lsm4	100	88.889	ENSMALG00000018159	lsm4	100	89.583	Monopterus_albus
ENSIPUG00000005368	Lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	81.884	Mus_caroli
ENSIPUG00000005368	Lsm4	62	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSIPUG00000005368	Lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	81.884	Mus_pahari
ENSIPUG00000005368	Lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	81.884	Mus_spretus
ENSIPUG00000005368	Lsm4	62	98.864	ENSMPUG00000015589	LSM4	99	84.058	Mustela_putorius_furo
ENSIPUG00000005368	Lsm4	61	98.851	ENSMLUG00000004010	LSM4	98	83.942	Myotis_lucifugus
ENSIPUG00000005368	Lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	81.884	Nannospalax_galili
ENSIPUG00000005368	Lsm4	69	98.980	ENSNBRG00000022150	lsm4	60	98.980	Neolamprologus_brichardi
ENSIPUG00000005368	Lsm4	51	95.890	ENSMEUG00000013229	LSM4	98	78.049	Notamacropus_eugenii
ENSIPUG00000005368	Lsm4	86	77.049	ENSOPRG00000005575	LSM4	98	76.230	Ochotona_princeps
ENSIPUG00000005368	Lsm4	62	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSIPUG00000005368	Lsm4	96	64.748	ENSODEG00000011712	-	98	64.748	Octodon_degus
ENSIPUG00000005368	Lsm4	96	83.212	ENSODEG00000020549	-	99	79.710	Octodon_degus
ENSIPUG00000005368	Lsm4	100	85.811	ENSONIG00000012724	lsm4	100	86.486	Oreochromis_niloticus
ENSIPUG00000005368	Lsm4	78	92.241	ENSOANG00000007434	LSM4	99	92.241	Ornithorhynchus_anatinus
ENSIPUG00000005368	Lsm4	100	88.966	ENSORLG00000008391	lsm4	100	88.966	Oryzias_latipes
ENSIPUG00000005368	Lsm4	100	88.276	ENSORLG00020014829	lsm4	100	88.276	Oryzias_latipes_hni
ENSIPUG00000005368	Lsm4	100	87.586	ENSORLG00015010205	lsm4	100	87.586	Oryzias_latipes_hsok
ENSIPUG00000005368	Lsm4	100	86.897	ENSOMEG00000003606	lsm4	100	86.897	Oryzias_melastigma
ENSIPUG00000005368	Lsm4	69	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSIPUG00000005368	Lsm4	61	98.851	ENSOARG00000012553	LSM4	95	79.508	Ovis_aries
ENSIPUG00000005368	Lsm4	62	98.864	ENSPPAG00000044045	-	99	84.058	Pan_paniscus
ENSIPUG00000005368	Lsm4	62	98.864	ENSPPRG00000018264	LSM4	99	84.058	Panthera_pardus
ENSIPUG00000005368	Lsm4	61	98.851	ENSPTIG00000006306	LSM4	99	83.942	Panthera_tigris_altaica
ENSIPUG00000005368	Lsm4	62	98.864	ENSPTRG00000031470	LSM4	99	84.058	Pan_troglodytes
ENSIPUG00000005368	Lsm4	62	98.864	ENSPANG00000014399	LSM4	99	84.058	Papio_anubis
ENSIPUG00000005368	Lsm4	100	96.479	ENSPKIG00000006154	lsm4	100	96.479	Paramormyrops_kingsleyae
ENSIPUG00000005368	Lsm4	94	90.977	ENSPSIG00000012358	LSM4	96	90.977	Pelodiscus_sinensis
ENSIPUG00000005368	Lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	81.884	Peromyscus_maniculatus_bairdii
ENSIPUG00000005368	Lsm4	100	90.972	ENSPFOG00000000570	lsm4	76	88.889	Poecilia_formosa
ENSIPUG00000005368	Lsm4	100	91.667	ENSPLAG00000016267	lsm4	100	88.889	Poecilia_latipinna
ENSIPUG00000005368	Lsm4	100	88.889	ENSPMEG00000016378	lsm4	100	88.889	Poecilia_mexicana
ENSIPUG00000005368	Lsm4	100	89.583	ENSPREG00000011290	lsm4	76	89.583	Poecilia_reticulata
ENSIPUG00000005368	Lsm4	62	98.864	ENSPPYG00000009736	LSM4	99	84.058	Pongo_abelii
ENSIPUG00000005368	Lsm4	51	97.260	ENSPCAG00000008513	LSM4	98	77.236	Procavia_capensis
ENSIPUG00000005368	Lsm4	70	95.960	ENSPCOG00000019837	LSM4	99	83.333	Propithecus_coquereli
ENSIPUG00000005368	Lsm4	62	98.864	ENSPVAG00000015383	LSM4	99	84.058	Pteropus_vampyrus
ENSIPUG00000005368	Lsm4	100	86.395	ENSPNYG00000016794	lsm4	100	87.075	Pundamilia_nyererei
ENSIPUG00000005368	Lsm4	95	96.296	ENSPNAG00000016598	lsm4	100	96.296	Pygocentrus_nattereri
ENSIPUG00000005368	Lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	81.884	Rattus_norvegicus
ENSIPUG00000005368	Lsm4	62	98.864	ENSRBIG00000024717	LSM4	99	84.058	Rhinopithecus_bieti
ENSIPUG00000005368	Lsm4	62	98.864	ENSRROG00000045706	LSM4	99	84.058	Rhinopithecus_roxellana
ENSIPUG00000005368	Lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSIPUG00000005368	Lsm4	52	98.649	ENSSBOG00000022455	LSM4	98	78.226	Saimiri_boliviensis_boliviensis
ENSIPUG00000005368	Lsm4	62	100.000	ENSSHAG00000011559	LSM4	99	84.783	Sarcophilus_harrisii
ENSIPUG00000005368	Lsm4	100	95.775	ENSSFOG00015021067	lsm4	100	95.775	Scleropages_formosus
ENSIPUG00000005368	Lsm4	100	77.333	ENSSMAG00000021020	lsm4	100	82.000	Scophthalmus_maximus
ENSIPUG00000005368	Lsm4	100	77.381	ENSSDUG00000009588	lsm4	100	74.405	Seriola_dumerili
ENSIPUG00000005368	Lsm4	100	76.923	ENSSLDG00000006827	lsm4	100	73.964	Seriola_lalandi_dorsalis
ENSIPUG00000005368	Lsm4	61	100.000	ENSSPUG00000010166	LSM4	63	98.980	Sphenodon_punctatus
ENSIPUG00000005368	Lsm4	100	84.868	ENSSPAG00000011615	lsm4	100	85.526	Stegastes_partitus
ENSIPUG00000005368	Lsm4	62	98.864	ENSSSCG00000034314	LSM4	99	84.058	Sus_scrofa
ENSIPUG00000005368	Lsm4	100	88.194	ENSTRUG00000021737	lsm4	100	88.194	Takifugu_rubripes
ENSIPUG00000005368	Lsm4	100	89.583	ENSTNIG00000010191	lsm4	100	89.583	Tetraodon_nigroviridis
ENSIPUG00000005368	Lsm4	96	75.912	ENSUAMG00000000665	LSM4	98	83.942	Ursus_americanus
ENSIPUG00000005368	Lsm4	62	98.864	ENSUMAG00000009013	LSM4	99	84.058	Ursus_maritimus
ENSIPUG00000005368	Lsm4	61	98.851	ENSVVUG00000008136	LSM4	70	83.212	Vulpes_vulpes
ENSIPUG00000005368	Lsm4	96	89.051	ENSXETG00000024933	lsm4	99	89.051	Xenopus_tropicalis
ENSIPUG00000005368	Lsm4	100	90.972	ENSXMAG00000026672	lsm4	76	88.889	Xiphophorus_maculatus