EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000005612 (Gene tree)
Gene ID: 108264636
Gene Symbol: DDB1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 13958 bases
Position: chr4:980488-994445
Accession: 108264636
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000008267	CPSF_A	PF03178.15	5.5e-85	1	1
ENSIPUP00000008295	CPSF_A	PF03178.15	2.2e-81	1	1
ENSIPUP00000008313	CPSF_A	PF03178.15	5.9e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000008630	-	3423	XM_017466363	ENSIPUP00000008267	1140 (aa)	XP_017321852	W5UK08
ENSIPUT00000008676	-	3430	-	ENSIPUP00000008313	1101 (aa)	-	-
ENSIPUT00000008658	-	3402	-	ENSIPUP00000008295	1133 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000005612's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03420	Nucleotide excision repair	KEGG
ipu04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005612's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005612	DDB1	100	90.439	ENSG00000167986	DDB1	100	95.890	Homo_sapiens
ENSIPUG00000005612	DDB1	98	96.320	ENSAPOG00000005036	ddb1	99	96.122	Acanthochromis_polyacanthus
ENSIPUG00000005612	DDB1	100	90.526	ENSAMEG00000016518	DDB1	100	90.526	Ailuropoda_melanoleuca
ENSIPUG00000005612	DDB1	89	95.510	ENSACIG00000020624	ddb1	99	95.510	Amphilophus_citrinellus
ENSIPUG00000005612	DDB1	100	96.404	ENSAOCG00000003066	ddb1	100	96.404	Amphiprion_ocellaris
ENSIPUG00000005612	DDB1	100	96.404	ENSAPEG00000000092	ddb1	100	96.404	Amphiprion_percula
ENSIPUG00000005612	DDB1	98	96.182	ENSATEG00000020571	ddb1	97	96.182	Anabas_testudineus
ENSIPUG00000005612	DDB1	99	89.204	ENSAPLG00000007174	DDB1	99	89.204	Anas_platyrhynchos
ENSIPUG00000005612	DDB1	100	90.263	ENSACAG00000017758	DDB1	100	90.263	Anolis_carolinensis
ENSIPUG00000005612	DDB1	100	90.439	ENSANAG00000021878	DDB1	100	90.439	Aotus_nancymaae
ENSIPUG00000005612	DDB1	100	95.965	ENSACLG00000012401	ddb1	100	95.965	Astatotilapia_calliptera
ENSIPUG00000005612	DDB1	100	90.439	ENSBTAG00000021569	DDB1	93	90.439	Bos_taurus
ENSIPUG00000005612	DDB1	100	37.468	WBGene00010890	ddb-1	100	37.468	Caenorhabditis_elegans
ENSIPUG00000005612	DDB1	100	90.439	ENSCJAG00000019319	DDB1	100	90.439	Callithrix_jacchus
ENSIPUG00000005612	DDB1	100	90.526	ENSCAFG00000016264	DDB1	100	90.526	Canis_familiaris
ENSIPUG00000005612	DDB1	98	90.901	ENSCAFG00020012722	DDB1	99	90.901	Canis_lupus_dingo
ENSIPUG00000005612	DDB1	100	90.439	ENSCHIG00000014969	DDB1	100	90.439	Capra_hircus
ENSIPUG00000005612	DDB1	100	90.263	ENSTSYG00000008027	DDB1	100	90.263	Carlito_syrichta
ENSIPUG00000005612	DDB1	98	90.527	ENSCAPG00000010786	DDB1	100	90.527	Cavia_aperea
ENSIPUG00000005612	DDB1	100	90.526	ENSCPOG00000009956	DDB1	100	90.526	Cavia_porcellus
ENSIPUG00000005612	DDB1	100	90.439	ENSCCAG00000035883	DDB1	100	90.439	Cebus_capucinus
ENSIPUG00000005612	DDB1	100	88.021	ENSCATG00000044495	DDB1	100	88.021	Cercocebus_atys
ENSIPUG00000005612	DDB1	100	90.702	ENSCLAG00000004126	DDB1	100	90.702	Chinchilla_lanigera
ENSIPUG00000005612	DDB1	100	90.439	ENSCSAG00000006392	DDB1	100	90.439	Chlorocebus_sabaeus
ENSIPUG00000005612	DDB1	88	84.280	ENSCHOG00000011377	DDB1	90	84.280	Choloepus_hoffmanni
ENSIPUG00000005612	DDB1	100	90.439	ENSCPBG00000017728	DDB1	100	90.439	Chrysemys_picta_bellii
ENSIPUG00000005612	DDB1	100	60.938	ENSCING00000007437	-	100	60.938	Ciona_intestinalis
ENSIPUG00000005612	DDB1	94	60.000	ENSCSAVG00000004783	-	100	60.000	Ciona_savignyi
ENSIPUG00000005612	DDB1	100	90.439	ENSCANG00000019948	DDB1	100	90.439	Colobus_angolensis_palliatus
ENSIPUG00000005612	DDB1	100	90.526	ENSCGRG00001016599	Ddb1	100	90.526	Cricetulus_griseus_chok1gshd
ENSIPUG00000005612	DDB1	100	90.526	ENSCGRG00000013427	Ddb1	100	90.526	Cricetulus_griseus_crigri
ENSIPUG00000005612	DDB1	96	95.476	ENSCSEG00000012499	ddb1	99	93.725	Cynoglossus_semilaevis
ENSIPUG00000005612	DDB1	98	94.907	ENSCVAG00000019531	ddb1	100	94.907	Cyprinodon_variegatus
ENSIPUG00000005612	DDB1	100	92.644	ENSDARG00000074431	ddb1	100	92.644	Danio_rerio
ENSIPUG00000005612	DDB1	99	89.455	ENSDNOG00000014884	DDB1	99	89.455	Dasypus_novemcinctus
ENSIPUG00000005612	DDB1	84	93.636	ENSDORG00000000127	Ddb1	100	93.636	Dipodomys_ordii
ENSIPUG00000005612	DDB1	100	60.873	FBgn0260962	pic	100	60.873	Drosophila_melanogaster
ENSIPUG00000005612	DDB1	71	93.701	ENSETEG00000001053	-	71	93.701	Echinops_telfairi
ENSIPUG00000005612	DDB1	81	84.027	ENSEBUG00000014593	ddb1	97	84.027	Eptatretus_burgeri
ENSIPUG00000005612	DDB1	100	90.439	ENSEASG00005008184	DDB1	100	90.439	Equus_asinus_asinus
ENSIPUG00000005612	DDB1	100	90.439	ENSECAG00000012136	DDB1	100	90.439	Equus_caballus
ENSIPUG00000005612	DDB1	88	87.037	ENSEEUG00000003194	DDB1	85	87.037	Erinaceus_europaeus
ENSIPUG00000005612	DDB1	100	95.965	ENSELUG00000023868	ddb1	100	95.965	Esox_lucius
ENSIPUG00000005612	DDB1	100	90.526	ENSFCAG00000029716	DDB1	100	90.526	Felis_catus
ENSIPUG00000005612	DDB1	100	89.851	ENSFALG00000011981	DDB1	100	89.851	Ficedula_albicollis
ENSIPUG00000005612	DDB1	100	90.702	ENSFDAG00000005128	DDB1	100	90.702	Fukomys_damarensis
ENSIPUG00000005612	DDB1	90	95.686	ENSFHEG00000022133	ddb1	99	95.686	Fundulus_heteroclitus
ENSIPUG00000005612	DDB1	82	96.656	ENSGMOG00000019386	ddb1	94	96.656	Gadus_morhua
ENSIPUG00000005612	DDB1	100	90.263	ENSGALG00000042333	DDB1	100	90.263	Gallus_gallus
ENSIPUG00000005612	DDB1	98	95.273	ENSGAFG00000013142	ddb1	99	95.273	Gambusia_affinis
ENSIPUG00000005612	DDB1	97	95.421	ENSGACG00000017182	ddb1	100	94.317	Gasterosteus_aculeatus
ENSIPUG00000005612	DDB1	95	90.221	ENSGAGG00000014124	DDB1	100	90.221	Gopherus_agassizii
ENSIPUG00000005612	DDB1	100	90.439	ENSGGOG00000004052	DDB1	100	90.439	Gorilla_gorilla
ENSIPUG00000005612	DDB1	100	95.965	ENSHBUG00000008873	ddb1	100	95.965	Haplochromis_burtoni
ENSIPUG00000005612	DDB1	100	90.526	ENSHGLG00000018430	DDB1	100	90.526	Heterocephalus_glaber_female
ENSIPUG00000005612	DDB1	100	89.561	ENSHGLG00100014475	DDB1	100	89.561	Heterocephalus_glaber_male
ENSIPUG00000005612	DDB1	98	95.349	ENSHCOG00000018670	ddb1	99	94.986	Hippocampus_comes
ENSIPUG00000005612	DDB1	100	90.439	ENSSTOG00000007552	DDB1	100	90.439	Ictidomys_tridecemlineatus
ENSIPUG00000005612	DDB1	100	90.351	ENSJJAG00000017769	Ddb1	100	90.351	Jaculus_jaculus
ENSIPUG00000005612	DDB1	98	96.000	ENSKMAG00000002315	ddb1	100	96.000	Kryptolebias_marmoratus
ENSIPUG00000005612	DDB1	87	95.942	ENSLBEG00000017065	ddb1	99	95.942	Labrus_bergylta
ENSIPUG00000005612	DDB1	100	90.368	ENSLACG00000017611	DDB1	100	90.368	Latimeria_chalumnae
ENSIPUG00000005612	DDB1	92	87.243	ENSLOCG00000000012	ddb1	100	87.243	Lepisosteus_oculatus
ENSIPUG00000005612	DDB1	100	90.351	ENSLAFG00000011513	DDB1	100	90.351	Loxodonta_africana
ENSIPUG00000005612	DDB1	100	90.439	ENSMFAG00000042035	DDB1	100	90.439	Macaca_fascicularis
ENSIPUG00000005612	DDB1	99	90.451	ENSMMUG00000002691	DDB1	100	89.474	Macaca_mulatta
ENSIPUG00000005612	DDB1	100	90.439	ENSMNEG00000031559	DDB1	100	90.439	Macaca_nemestrina
ENSIPUG00000005612	DDB1	100	90.439	ENSMLEG00000044136	DDB1	100	90.439	Mandrillus_leucophaeus
ENSIPUG00000005612	DDB1	100	96.404	ENSMAMG00000014372	ddb1	100	96.404	Mastacembelus_armatus
ENSIPUG00000005612	DDB1	100	95.877	ENSMZEG00005013835	ddb1	100	95.877	Maylandia_zebra
ENSIPUG00000005612	DDB1	94	89.479	ENSMGAG00000004990	DDB1	100	89.479	Meleagris_gallopavo
ENSIPUG00000005612	DDB1	100	90.526	ENSMAUG00000012926	Ddb1	100	90.526	Mesocricetus_auratus
ENSIPUG00000005612	DDB1	100	90.614	ENSMICG00000013703	DDB1	100	90.614	Microcebus_murinus
ENSIPUG00000005612	DDB1	100	90.439	ENSMOCG00000020499	Ddb1	100	90.439	Microtus_ochrogaster
ENSIPUG00000005612	DDB1	89	95.918	ENSMMOG00000001758	ddb1	99	95.918	Mola_mola
ENSIPUG00000005612	DDB1	100	81.661	ENSMODG00000020353	DDB1	100	81.661	Monodelphis_domestica
ENSIPUG00000005612	DDB1	100	96.667	ENSMALG00000014071	ddb1	100	96.667	Monopterus_albus
ENSIPUG00000005612	DDB1	100	90.526	MGP_CAROLIEiJ_G0022695	Ddb1	100	90.526	Mus_caroli
ENSIPUG00000005612	DDB1	100	90.614	ENSMUSG00000024740	Ddb1	100	90.614	Mus_musculus
ENSIPUG00000005612	DDB1	100	90.526	MGP_PahariEiJ_G0014189	Ddb1	100	90.526	Mus_pahari
ENSIPUG00000005612	DDB1	100	90.614	MGP_SPRETEiJ_G0023609	Ddb1	100	90.614	Mus_spretus
ENSIPUG00000005612	DDB1	100	87.456	ENSMPUG00000014200	DDB1	100	87.456	Mustela_putorius_furo
ENSIPUG00000005612	DDB1	100	90.614	ENSMLUG00000013232	DDB1	100	90.614	Myotis_lucifugus
ENSIPUG00000005612	DDB1	100	90.439	ENSNGAG00000009384	Ddb1	100	90.439	Nannospalax_galili
ENSIPUG00000005612	DDB1	100	96.053	ENSNBRG00000019581	ddb1	100	96.053	Neolamprologus_brichardi
ENSIPUG00000005612	DDB1	100	87.587	ENSNLEG00000002022	DDB1	100	87.587	Nomascus_leucogenys
ENSIPUG00000005612	DDB1	90	92.958	ENSMEUG00000001099	DDB1	93	92.958	Notamacropus_eugenii
ENSIPUG00000005612	DDB1	90	81.959	ENSOPRG00000008254	DDB1	90	81.959	Ochotona_princeps
ENSIPUG00000005612	DDB1	100	90.526	ENSODEG00000002419	DDB1	100	90.526	Octodon_degus
ENSIPUG00000005612	DDB1	100	95.877	ENSONIG00000005804	ddb1	100	95.877	Oreochromis_niloticus
ENSIPUG00000005612	DDB1	91	90.407	ENSOANG00000004897	DDB1	100	90.407	Ornithorhynchus_anatinus
ENSIPUG00000005612	DDB1	100	90.439	ENSOCUG00000001667	DDB1	100	90.439	Oryctolagus_cuniculus
ENSIPUG00000005612	DDB1	98	95.438	ENSORLG00000001399	ddb1	99	94.229	Oryzias_latipes
ENSIPUG00000005612	DDB1	98	95.345	ENSORLG00020001277	ddb1	97	93.951	Oryzias_latipes_hni
ENSIPUG00000005612	DDB1	98	95.438	ENSORLG00015002080	ddb1	99	95.438	Oryzias_latipes_hsok
ENSIPUG00000005612	DDB1	99	94.858	ENSOMEG00000006181	ddb1	99	94.858	Oryzias_melastigma
ENSIPUG00000005612	DDB1	100	90.614	ENSOGAG00000016103	DDB1	100	90.614	Otolemur_garnettii
ENSIPUG00000005612	DDB1	99	90.650	ENSOARG00000011716	DDB1	98	90.650	Ovis_aries
ENSIPUG00000005612	DDB1	100	90.439	ENSPPAG00000035343	DDB1	100	90.439	Pan_paniscus
ENSIPUG00000005612	DDB1	100	90.526	ENSPPRG00000013300	DDB1	100	90.526	Panthera_pardus
ENSIPUG00000005612	DDB1	98	90.527	ENSPTIG00000006909	DDB1	98	90.527	Panthera_tigris_altaica
ENSIPUG00000005612	DDB1	100	90.439	ENSPTRG00000003737	DDB1	100	90.439	Pan_troglodytes
ENSIPUG00000005612	DDB1	100	90.439	ENSPANG00000000242	DDB1	100	90.439	Papio_anubis
ENSIPUG00000005612	DDB1	98	95.450	ENSPKIG00000019213	ddb1	94	95.450	Paramormyrops_kingsleyae
ENSIPUG00000005612	DDB1	98	89.769	ENSPSIG00000013275	DDB1	100	89.769	Pelodiscus_sinensis
ENSIPUG00000005612	DDB1	89	95.816	ENSPMGG00000021179	ddb1	99	95.816	Periophthalmus_magnuspinnatus
ENSIPUG00000005612	DDB1	100	90.526	ENSPEMG00000012241	Ddb1	100	90.526	Peromyscus_maniculatus_bairdii
ENSIPUG00000005612	DDB1	92	86.346	ENSPMAG00000008479	ddb1	100	86.346	Petromyzon_marinus
ENSIPUG00000005612	DDB1	100	90.789	ENSPCIG00000002643	DDB1	100	90.789	Phascolarctos_cinereus
ENSIPUG00000005612	DDB1	100	95.355	ENSPFOG00000002768	ddb1	100	95.355	Poecilia_formosa
ENSIPUG00000005612	DDB1	100	95.175	ENSPLAG00000017227	ddb1	100	95.175	Poecilia_latipinna
ENSIPUG00000005612	DDB1	100	95.175	ENSPMEG00000011398	ddb1	100	95.175	Poecilia_mexicana
ENSIPUG00000005612	DDB1	98	95.624	ENSPREG00000004440	ddb1	98	95.349	Poecilia_reticulata
ENSIPUG00000005612	DDB1	100	86.038	ENSPPYG00000003193	DDB1	100	86.038	Pongo_abelii
ENSIPUG00000005612	DDB1	85	88.806	ENSPCAG00000011040	DDB1	85	88.806	Procavia_capensis
ENSIPUG00000005612	DDB1	100	89.405	ENSPCOG00000015176	DDB1	100	89.405	Propithecus_coquereli
ENSIPUG00000005612	DDB1	100	90.351	ENSPVAG00000003847	DDB1	100	90.351	Pteropus_vampyrus
ENSIPUG00000005612	DDB1	98	98.607	ENSPNAG00000006635	ddb1	97	98.695	Pygocentrus_nattereri
ENSIPUG00000005612	DDB1	100	90.614	ENSRNOG00000020715	Ddb1	100	90.614	Rattus_norvegicus
ENSIPUG00000005612	DDB1	100	90.439	ENSRBIG00000033611	DDB1	100	90.439	Rhinopithecus_bieti
ENSIPUG00000005612	DDB1	100	90.439	ENSRROG00000041407	DDB1	100	90.439	Rhinopithecus_roxellana
ENSIPUG00000005612	DDB1	100	90.526	ENSSBOG00000019775	DDB1	100	90.526	Saimiri_boliviensis_boliviensis
ENSIPUG00000005612	DDB1	94	88.224	ENSSHAG00000011600	DDB1	100	88.224	Sarcophilus_harrisii
ENSIPUG00000005612	DDB1	98	95.531	ENSSFOG00015011151	ddb1	97	95.531	Scleropages_formosus
ENSIPUG00000005612	DDB1	100	95.965	ENSSMAG00000009495	ddb1	100	95.965	Scophthalmus_maximus
ENSIPUG00000005612	DDB1	100	96.316	ENSSDUG00000004642	ddb1	100	96.316	Seriola_dumerili
ENSIPUG00000005612	DDB1	100	96.316	ENSSLDG00000015804	ddb1	100	96.316	Seriola_lalandi_dorsalis
ENSIPUG00000005612	DDB1	70	88.679	ENSSARG00000003290	-	72	88.679	Sorex_araneus
ENSIPUG00000005612	DDB1	100	90.439	ENSSPUG00000019338	DDB1	100	90.439	Sphenodon_punctatus
ENSIPUG00000005612	DDB1	98	96.276	ENSSPAG00000009888	ddb1	99	96.276	Stegastes_partitus
ENSIPUG00000005612	DDB1	100	89.561	ENSSSCG00000013094	DDB1	100	89.561	Sus_scrofa
ENSIPUG00000005612	DDB1	100	89.912	ENSTGUG00000006414	DDB1	100	89.912	Taeniopygia_guttata
ENSIPUG00000005612	DDB1	98	94.620	ENSTRUG00000016682	ddb1	99	94.620	Takifugu_rubripes
ENSIPUG00000005612	DDB1	88	89.920	ENSTNIG00000009565	ddb1	99	89.920	Tetraodon_nigroviridis
ENSIPUG00000005612	DDB1	92	85.117	ENSTTRG00000011055	DDB1	94	85.117	Tursiops_truncatus
ENSIPUG00000005612	DDB1	98	90.901	ENSUAMG00000017793	DDB1	94	90.901	Ursus_americanus
ENSIPUG00000005612	DDB1	98	90.901	ENSUMAG00000011788	DDB1	98	90.901	Ursus_maritimus
ENSIPUG00000005612	DDB1	90	86.024	ENSVPAG00000007963	DDB1	92	86.024	Vicugna_pacos
ENSIPUG00000005612	DDB1	100	90.526	ENSVVUG00000004987	DDB1	100	90.526	Vulpes_vulpes
ENSIPUG00000005612	DDB1	100	88.636	ENSXETG00000008820	ddb1	100	88.636	Xenopus_tropicalis
ENSIPUG00000005612	DDB1	89	95.204	ENSXCOG00000013956	ddb1	99	95.204	Xiphophorus_couchianus
ENSIPUG00000005612	DDB1	98	95.181	ENSXMAG00000000022	ddb1	99	95.181	Xiphophorus_maculatus