EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000005799 (Gene tree)
Gene ID: 108279796
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 7406 bases
Position: chr19:6525917-6533322
Accession: 108279796
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000008450	Exo_endo_phos	PF03372.23	2.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000008817	-	4833	XM_017494284	ENSIPUP00000008450	311 (aa)	XP_017349773	A0A2D0T4E3

Gene Model

Click here to download ENSIPUG00000005799's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005799's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005799	apex1	100	67.398	ENSG00000100823	APEX1	100	67.712	Homo_sapiens
ENSIPUG00000005799	apex1	98	82.623	ENSAPOG00000017002	apex1	99	82.623	Acanthochromis_polyacanthus
ENSIPUG00000005799	apex1	100	66.458	ENSAMEG00000005418	APEX1	100	67.398	Ailuropoda_melanoleuca
ENSIPUG00000005799	apex1	89	86.643	ENSACIG00000010653	apex1	97	86.760	Amphilophus_citrinellus
ENSIPUG00000005799	apex1	99	81.877	ENSAOCG00000009649	apex1	99	81.877	Amphiprion_ocellaris
ENSIPUG00000005799	apex1	99	81.877	ENSAPEG00000021453	apex1	99	81.877	Amphiprion_percula
ENSIPUG00000005799	apex1	99	81.230	ENSATEG00000002883	apex1	97	84.142	Anabas_testudineus
ENSIPUG00000005799	apex1	100	69.716	ENSACAG00000008099	APEX1	100	70.662	Anolis_carolinensis
ENSIPUG00000005799	apex1	100	68.339	ENSANAG00000030117	APEX1	100	68.652	Aotus_nancymaae
ENSIPUG00000005799	apex1	88	88.000	ENSACLG00000018441	apex1	99	84.839	Astatotilapia_calliptera
ENSIPUG00000005799	apex1	100	91.346	ENSAMXG00000034699	apex1	100	91.346	Astyanax_mexicanus
ENSIPUG00000005799	apex1	100	65.831	ENSBTAG00000002745	APEX1	100	66.771	Bos_taurus
ENSIPUG00000005799	apex1	91	42.807	WBGene00001372	exo-3	98	42.807	Caenorhabditis_elegans
ENSIPUG00000005799	apex1	100	67.712	ENSCJAG00000009726	APEX1	100	68.025	Callithrix_jacchus
ENSIPUG00000005799	apex1	100	67.085	ENSCAFG00000032033	APEX1	100	67.398	Canis_familiaris
ENSIPUG00000005799	apex1	100	67.085	ENSCAFG00020014377	-	100	67.398	Canis_lupus_dingo
ENSIPUG00000005799	apex1	53	60.116	ENSCAFG00020023002	-	96	60.694	Canis_lupus_dingo
ENSIPUG00000005799	apex1	96	53.770	ENSCHIG00000014537	-	98	53.115	Capra_hircus
ENSIPUG00000005799	apex1	100	65.831	ENSCHIG00000007298	-	100	66.771	Capra_hircus
ENSIPUG00000005799	apex1	100	66.458	ENSTSYG00000034813	APEX1	100	66.458	Carlito_syrichta
ENSIPUG00000005799	apex1	87	64.234	ENSCAPG00000016235	APEX1	91	70.339	Cavia_aperea
ENSIPUG00000005799	apex1	100	67.085	ENSCPOG00000030909	APEX1	100	67.085	Cavia_porcellus
ENSIPUG00000005799	apex1	100	67.712	ENSCCAG00000033056	-	100	68.025	Cebus_capucinus
ENSIPUG00000005799	apex1	100	58.307	ENSCCAG00000031931	-	100	58.621	Cebus_capucinus
ENSIPUG00000005799	apex1	100	67.398	ENSCATG00000015580	APEX1	100	67.398	Cercocebus_atys
ENSIPUG00000005799	apex1	100	68.025	ENSCLAG00000001002	APEX1	100	68.025	Chinchilla_lanigera
ENSIPUG00000005799	apex1	100	67.085	ENSCSAG00000016685	-	100	67.085	Chlorocebus_sabaeus
ENSIPUG00000005799	apex1	100	67.085	ENSCSAG00000016670	-	100	67.085	Chlorocebus_sabaeus
ENSIPUG00000005799	apex1	100	72.327	ENSCPBG00000009567	APEX1	100	72.327	Chrysemys_picta_bellii
ENSIPUG00000005799	apex1	99	53.797	ENSCING00000008137	-	99	53.797	Ciona_intestinalis
ENSIPUG00000005799	apex1	94	48.288	ENSCSAVG00000007144	-	100	52.713	Ciona_savignyi
ENSIPUG00000005799	apex1	100	67.398	ENSCANG00000030726	APEX1	100	67.398	Colobus_angolensis_palliatus
ENSIPUG00000005799	apex1	100	67.085	ENSCGRG00001017046	Apex1	100	67.085	Cricetulus_griseus_chok1gshd
ENSIPUG00000005799	apex1	100	67.085	ENSCGRG00000008984	Apex1	100	67.085	Cricetulus_griseus_crigri
ENSIPUG00000005799	apex1	99	81.553	ENSCSEG00000017499	apex1	99	81.553	Cynoglossus_semilaevis
ENSIPUG00000005799	apex1	99	82.848	ENSCVAG00000022075	apex1	99	83.871	Cyprinodon_variegatus
ENSIPUG00000005799	apex1	100	84.887	ENSDARG00000045843	apex1	100	86.495	Danio_rerio
ENSIPUG00000005799	apex1	100	64.577	ENSDNOG00000042234	APEX1	95	65.517	Dasypus_novemcinctus
ENSIPUG00000005799	apex1	100	67.398	ENSDORG00000001616	Apex1	100	67.398	Dipodomys_ordii
ENSIPUG00000005799	apex1	100	67.398	ENSETEG00000004855	-	100	68.339	Echinops_telfairi
ENSIPUG00000005799	apex1	76	60.504	ENSEBUG00000000622	-	92	60.504	Eptatretus_burgeri
ENSIPUG00000005799	apex1	100	68.339	ENSEASG00005017489	APEX1	74	68.339	Equus_asinus_asinus
ENSIPUG00000005799	apex1	100	68.339	ENSECAG00000022325	APEX1	82	68.339	Equus_caballus
ENSIPUG00000005799	apex1	86	69.888	ENSEEUG00000012569	APEX1	97	68.459	Erinaceus_europaeus
ENSIPUG00000005799	apex1	100	83.974	ENSELUG00000021706	apex1	100	83.974	Esox_lucius
ENSIPUG00000005799	apex1	100	68.339	ENSFCAG00000030869	APEX1	100	68.339	Felis_catus
ENSIPUG00000005799	apex1	100	68.966	ENSFDAG00000006120	APEX1	100	68.966	Fukomys_damarensis
ENSIPUG00000005799	apex1	99	82.848	ENSFHEG00000009031	apex1	83	82.848	Fundulus_heteroclitus
ENSIPUG00000005799	apex1	99	75.405	ENSGMOG00000007943	apex1	99	75.405	Gadus_morhua
ENSIPUG00000005799	apex1	99	84.839	ENSGAFG00000005311	apex1	99	84.839	Gambusia_affinis
ENSIPUG00000005799	apex1	99	82.524	ENSGACG00000019497	apex1	99	86.090	Gasterosteus_aculeatus
ENSIPUG00000005799	apex1	100	72.013	ENSGAGG00000014999	APEX1	100	72.642	Gopherus_agassizii
ENSIPUG00000005799	apex1	100	67.712	ENSGGOG00000002128	APEX1	100	68.025	Gorilla_gorilla
ENSIPUG00000005799	apex1	99	82.201	ENSHBUG00000005894	apex1	99	85.113	Haplochromis_burtoni
ENSIPUG00000005799	apex1	100	68.652	ENSHGLG00000002848	APEX1	100	68.652	Heterocephalus_glaber_female
ENSIPUG00000005799	apex1	100	68.652	ENSHGLG00100017878	APEX1	100	68.652	Heterocephalus_glaber_male
ENSIPUG00000005799	apex1	99	81.935	ENSHCOG00000009961	apex1	99	81.935	Hippocampus_comes
ENSIPUG00000005799	apex1	100	66.771	ENSSTOG00000010096	APEX1	100	67.712	Ictidomys_tridecemlineatus
ENSIPUG00000005799	apex1	100	57.994	ENSJJAG00000003660	-	100	58.934	Jaculus_jaculus
ENSIPUG00000005799	apex1	100	66.144	ENSJJAG00000012067	-	100	66.144	Jaculus_jaculus
ENSIPUG00000005799	apex1	89	61.290	ENSJJAG00000020465	-	93	60.208	Jaculus_jaculus
ENSIPUG00000005799	apex1	99	85.161	ENSKMAG00000021171	apex1	99	85.161	Kryptolebias_marmoratus
ENSIPUG00000005799	apex1	99	81.877	ENSLBEG00000010248	apex1	99	81.877	Labrus_bergylta
ENSIPUG00000005799	apex1	100	73.567	ENSLACG00000008617	APEX1	100	73.567	Latimeria_chalumnae
ENSIPUG00000005799	apex1	100	80.317	ENSLOCG00000015516	apex1	99	80.317	Lepisosteus_oculatus
ENSIPUG00000005799	apex1	100	65.831	ENSLAFG00000021872	APEX1	100	66.144	Loxodonta_africana
ENSIPUG00000005799	apex1	100	67.398	ENSMFAG00000002565	APEX1	100	67.398	Macaca_fascicularis
ENSIPUG00000005799	apex1	100	67.398	ENSMMUG00000048039	APEX1	100	67.398	Macaca_mulatta
ENSIPUG00000005799	apex1	100	67.398	ENSMNEG00000036944	APEX1	100	67.398	Macaca_nemestrina
ENSIPUG00000005799	apex1	100	67.398	ENSMLEG00000042125	APEX1	100	67.398	Mandrillus_leucophaeus
ENSIPUG00000005799	apex1	99	83.172	ENSMAMG00000023526	apex1	99	83.172	Mastacembelus_armatus
ENSIPUG00000005799	apex1	88	88.000	ENSMZEG00005014187	apex1	99	84.839	Maylandia_zebra
ENSIPUG00000005799	apex1	100	67.296	ENSMAUG00000013994	Apex1	100	67.296	Mesocricetus_auratus
ENSIPUG00000005799	apex1	100	68.025	ENSMICG00000043554	APEX1	100	68.025	Microcebus_murinus
ENSIPUG00000005799	apex1	100	66.771	ENSMOCG00000013721	Apex1	100	66.771	Microtus_ochrogaster
ENSIPUG00000005799	apex1	99	82.315	ENSMMOG00000010031	apex1	97	82.315	Mola_mola
ENSIPUG00000005799	apex1	91	69.965	ENSMODG00000007125	APEX1	100	66.875	Monodelphis_domestica
ENSIPUG00000005799	apex1	90	81.071	ENSMALG00000011699	apex1	77	80.836	Monopterus_albus
ENSIPUG00000005799	apex1	99	68.553	MGP_CAROLIEiJ_G0019209	Apex1	99	68.553	Mus_caroli
ENSIPUG00000005799	apex1	100	68.025	ENSMUSG00000035960	Apex1	100	68.025	Mus_musculus
ENSIPUG00000005799	apex1	100	67.398	MGP_PahariEiJ_G0030232	Apex1	100	67.712	Mus_pahari
ENSIPUG00000005799	apex1	100	68.025	MGP_SPRETEiJ_G0020101	Apex1	100	68.025	Mus_spretus
ENSIPUG00000005799	apex1	100	66.978	ENSMLUG00000028957	APEX1	100	66.978	Myotis_lucifugus
ENSIPUG00000005799	apex1	100	68.025	ENSNGAG00000002725	-	100	68.025	Nannospalax_galili
ENSIPUG00000005799	apex1	87	55.714	ENSNGAG00000021748	-	86	55.714	Nannospalax_galili
ENSIPUG00000005799	apex1	88	88.000	ENSNBRG00000005334	apex1	91	84.839	Neolamprologus_brichardi
ENSIPUG00000005799	apex1	100	67.398	ENSNLEG00000010839	APEX1	100	67.712	Nomascus_leucogenys
ENSIPUG00000005799	apex1	100	66.456	ENSMEUG00000014519	APEX1	100	66.456	Notamacropus_eugenii
ENSIPUG00000005799	apex1	100	67.610	ENSOPRG00000014029	APEX1	100	67.610	Ochotona_princeps
ENSIPUG00000005799	apex1	100	67.712	ENSODEG00000001703	-	100	67.712	Octodon_degus
ENSIPUG00000005799	apex1	97	53.135	ENSODEG00000004777	-	99	53.135	Octodon_degus
ENSIPUG00000005799	apex1	100	53.231	ENSODEG00000006583	-	100	52.308	Octodon_degus
ENSIPUG00000005799	apex1	89	88.087	ENSONIG00000012089	apex1	99	84.839	Oreochromis_niloticus
ENSIPUG00000005799	apex1	91	68.772	ENSOANG00000008836	APEX1	80	66.358	Ornithorhynchus_anatinus
ENSIPUG00000005799	apex1	100	68.339	ENSOCUG00000005022	APEX1	100	68.652	Oryctolagus_cuniculus
ENSIPUG00000005799	apex1	99	83.601	ENSORLG00000012378	apex1	99	83.601	Oryzias_latipes
ENSIPUG00000005799	apex1	99	83.601	ENSORLG00020021371	apex1	99	83.601	Oryzias_latipes_hni
ENSIPUG00000005799	apex1	99	83.601	ENSORLG00015020089	apex1	99	83.601	Oryzias_latipes_hsok
ENSIPUG00000005799	apex1	99	83.548	ENSOMEG00000018876	apex1	99	83.601	Oryzias_melastigma
ENSIPUG00000005799	apex1	97	59.355	ENSOGAG00000029355	-	99	60.645	Otolemur_garnettii
ENSIPUG00000005799	apex1	100	68.339	ENSOGAG00000013335	-	100	68.339	Otolemur_garnettii
ENSIPUG00000005799	apex1	100	66.144	ENSOARG00000019740	-	100	67.085	Ovis_aries
ENSIPUG00000005799	apex1	97	62.783	ENSOARG00000001876	-	100	63.754	Ovis_aries
ENSIPUG00000005799	apex1	96	57.566	ENSOARG00000014424	-	97	57.237	Ovis_aries
ENSIPUG00000005799	apex1	100	67.398	ENSPPAG00000038760	APEX1	100	67.712	Pan_paniscus
ENSIPUG00000005799	apex1	100	67.398	ENSPPRG00000011794	APEX1	100	67.712	Panthera_pardus
ENSIPUG00000005799	apex1	100	68.339	ENSPTIG00000014829	APEX1	100	68.339	Panthera_tigris_altaica
ENSIPUG00000005799	apex1	100	67.398	ENSPTRG00000006093	APEX1	100	67.712	Pan_troglodytes
ENSIPUG00000005799	apex1	100	67.398	ENSPANG00000022757	APEX1	100	67.398	Papio_anubis
ENSIPUG00000005799	apex1	89	86.957	ENSPKIG00000003504	apex1	100	83.439	Paramormyrops_kingsleyae
ENSIPUG00000005799	apex1	78	82.186	ENSPMGG00000016596	apex1	74	82.186	Periophthalmus_magnuspinnatus
ENSIPUG00000005799	apex1	100	67.398	ENSPEMG00000019097	Apex1	100	67.398	Peromyscus_maniculatus_bairdii
ENSIPUG00000005799	apex1	94	70.748	ENSPMAG00000007275	-	99	70.748	Petromyzon_marinus
ENSIPUG00000005799	apex1	89	69.534	ENSPCIG00000023274	APEX1	100	66.250	Phascolarctos_cinereus
ENSIPUG00000005799	apex1	99	83.871	ENSPFOG00000004178	apex1	99	83.871	Poecilia_formosa
ENSIPUG00000005799	apex1	99	84.516	ENSPLAG00000012779	apex1	99	84.516	Poecilia_latipinna
ENSIPUG00000005799	apex1	99	83.871	ENSPMEG00000019623	apex1	99	83.871	Poecilia_mexicana
ENSIPUG00000005799	apex1	99	81.553	ENSPREG00000014298	apex1	99	81.553	Poecilia_reticulata
ENSIPUG00000005799	apex1	100	67.085	ENSPPYG00000005565	APEX1	100	67.398	Pongo_abelii
ENSIPUG00000005799	apex1	100	66.144	ENSPCAG00000010376	APEX1	100	66.144	Procavia_capensis
ENSIPUG00000005799	apex1	100	68.339	ENSPCOG00000021564	APEX1	100	68.339	Propithecus_coquereli
ENSIPUG00000005799	apex1	100	67.290	ENSPVAG00000010736	APEX1	100	67.290	Pteropus_vampyrus
ENSIPUG00000005799	apex1	88	88.364	ENSPNYG00000023940	apex1	99	85.161	Pundamilia_nyererei
ENSIPUG00000005799	apex1	96	87.960	ENSPNAG00000020897	apex1	93	91.367	Pygocentrus_nattereri
ENSIPUG00000005799	apex1	100	67.712	ENSRNOG00000009663	Apex1	100	67.712	Rattus_norvegicus
ENSIPUG00000005799	apex1	100	67.712	ENSRBIG00000038325	APEX1	99	67.712	Rhinopithecus_bieti
ENSIPUG00000005799	apex1	100	67.712	ENSSBOG00000018921	-	100	68.025	Saimiri_boliviensis_boliviensis
ENSIPUG00000005799	apex1	100	58.013	ENSSBOG00000031372	-	100	58.013	Saimiri_boliviensis_boliviensis
ENSIPUG00000005799	apex1	100	62.310	ENSSHAG00000013524	APEX1	100	64.506	Sarcophilus_harrisii
ENSIPUG00000005799	apex1	100	82.315	ENSSFOG00015001948	apex1	100	82.315	Scleropages_formosus
ENSIPUG00000005799	apex1	89	85.921	ENSSMAG00000013348	apex1	99	81.270	Scophthalmus_maximus
ENSIPUG00000005799	apex1	99	83.172	ENSSDUG00000016377	apex1	99	84.516	Seriola_dumerili
ENSIPUG00000005799	apex1	99	83.172	ENSSLDG00000023005	apex1	99	84.516	Seriola_lalandi_dorsalis
ENSIPUG00000005799	apex1	99	69.032	ENSSPUG00000000531	APEX1	99	69.032	Sphenodon_punctatus
ENSIPUG00000005799	apex1	99	81.230	ENSSPAG00000000458	apex1	98	83.000	Stegastes_partitus
ENSIPUG00000005799	apex1	100	66.144	ENSSSCG00000040060	-	100	67.398	Sus_scrofa
ENSIPUG00000005799	apex1	93	38.762	ENSSSCG00000039705	-	99	38.436	Sus_scrofa
ENSIPUG00000005799	apex1	76	60.426	ENSTGUG00000014378	APEX1	100	60.426	Taeniopygia_guttata
ENSIPUG00000005799	apex1	89	85.560	ENSTRUG00000004268	apex1	94	80.906	Takifugu_rubripes
ENSIPUG00000005799	apex1	99	82.201	ENSTNIG00000005778	apex1	99	82.201	Tetraodon_nigroviridis
ENSIPUG00000005799	apex1	100	64.577	ENSTBEG00000006405	APEX1	100	65.517	Tupaia_belangeri
ENSIPUG00000005799	apex1	76	68.936	ENSTTRG00000007860	APEX1	100	68.936	Tursiops_truncatus
ENSIPUG00000005799	apex1	100	67.398	ENSUAMG00000010457	APEX1	100	67.398	Ursus_americanus
ENSIPUG00000005799	apex1	100	67.398	ENSUMAG00000009178	APEX1	100	67.398	Ursus_maritimus
ENSIPUG00000005799	apex1	76	64.681	ENSVPAG00000005083	APEX1	100	64.681	Vicugna_pacos
ENSIPUG00000005799	apex1	100	67.085	ENSVVUG00000009010	APEX1	100	67.398	Vulpes_vulpes
ENSIPUG00000005799	apex1	100	69.620	ENSXETG00000024773	apex1	100	70.253	Xenopus_tropicalis
ENSIPUG00000005799	apex1	99	83.495	ENSXCOG00000015233	apex1	99	83.495	Xiphophorus_couchianus
ENSIPUG00000005799	apex1	99	83.495	ENSXMAG00000006195	apex1	99	83.495	Xiphophorus_maculatus