EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000005873 (Gene tree)
Gene ID: 108280774
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 15413 bases
Position: chr20:5247245-5262657
Accession: 108280774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000008615	GTP_EFTU	PF00009.27	1.3e-63	1	1
ENSIPUP00000008615	GTP_EFTU_D2	PF03144.25	6e-15	1	1
ENSIPUP00000008615	EFG_IV	PF03764.18	2.6e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000008989	-	3725	XM_017496166	ENSIPUP00000008615	748 (aa)	XP_017351655	A0A2D0TAG8

Gene Model

Click here to download ENSIPUG00000005873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000005873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000005873	gfm1	73	37.584	ENSIPUG00000000950	-	72	37.584
ENSIPUG00000005873	gfm1	76	38.255	ENSIPUG00000007921	eef2l2	73	38.255
ENSIPUG00000005873	gfm1	92	35.453	ENSIPUG00000024153	gfm2	93	35.589

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000005873	gfm1	97	80.165	ENSG00000168827	GFM1	100	95.000	Homo_sapiens
ENSIPUG00000005873	gfm1	93	81.805	ENSAPOG00000016489	gfm1	99	81.805	Acanthochromis_polyacanthus
ENSIPUG00000005873	gfm1	97	81.267	ENSAMEG00000013542	GFM1	96	81.267	Ailuropoda_melanoleuca
ENSIPUG00000005873	gfm1	98	80.027	ENSACIG00000014465	gfm1	95	80.027	Amphilophus_citrinellus
ENSIPUG00000005873	gfm1	100	83.289	ENSAOCG00000006023	gfm1	100	83.289	Amphiprion_ocellaris
ENSIPUG00000005873	gfm1	100	83.155	ENSAPEG00000024499	gfm1	100	83.155	Amphiprion_percula
ENSIPUG00000005873	gfm1	100	85.027	ENSATEG00000013789	gfm1	100	85.027	Anabas_testudineus
ENSIPUG00000005873	gfm1	97	79.862	ENSAPLG00000005022	GFM1	100	79.862	Anas_platyrhynchos
ENSIPUG00000005873	gfm1	97	80.138	ENSACAG00000006829	GFM1	98	80.138	Anolis_carolinensis
ENSIPUG00000005873	gfm1	100	78.162	ENSANAG00000035983	GFM1	100	77.896	Aotus_nancymaae
ENSIPUG00000005873	gfm1	100	84.759	ENSACLG00000016586	gfm1	100	84.759	Astatotilapia_calliptera
ENSIPUG00000005873	gfm1	100	89.037	ENSAMXG00000013435	gfm1	98	89.056	Astyanax_mexicanus
ENSIPUG00000005873	gfm1	97	80.000	ENSBTAG00000027795	GFM1	100	77.955	Bos_taurus
ENSIPUG00000005873	gfm1	93	58.621	WBGene00009246	gfm-1	96	57.660	Caenorhabditis_elegans
ENSIPUG00000005873	gfm1	100	77.822	ENSCJAG00000000363	GFM1	100	77.763	Callithrix_jacchus
ENSIPUG00000005873	gfm1	96	82.033	ENSCAFG00000009006	GFM1	100	81.657	Canis_familiaris
ENSIPUG00000005873	gfm1	96	82.033	ENSCAFG00020005878	GFM1	98	82.033	Canis_lupus_dingo
ENSIPUG00000005873	gfm1	97	80.276	ENSCHIG00000015220	GFM1	100	78.220	Capra_hircus
ENSIPUG00000005873	gfm1	100	78.752	ENSTSYG00000002013	GFM1	96	80.579	Carlito_syrichta
ENSIPUG00000005873	gfm1	97	70.621	ENSCAPG00000005699	GFM1	98	70.426	Cavia_aperea
ENSIPUG00000005873	gfm1	97	80.854	ENSCPOG00000001194	GFM1	96	80.854	Cavia_porcellus
ENSIPUG00000005873	gfm1	100	77.896	ENSCCAG00000025561	GFM1	100	77.630	Cebus_capucinus
ENSIPUG00000005873	gfm1	100	78.562	ENSCATG00000037622	GFM1	100	78.296	Cercocebus_atys
ENSIPUG00000005873	gfm1	97	79.477	ENSCLAG00000002503	GFM1	96	79.477	Chinchilla_lanigera
ENSIPUG00000005873	gfm1	100	78.961	ENSCSAG00000012162	GFM1	100	78.695	Chlorocebus_sabaeus
ENSIPUG00000005873	gfm1	100	70.955	ENSCHOG00000004867	GFM1	96	72.314	Choloepus_hoffmanni
ENSIPUG00000005873	gfm1	100	80.214	ENSCPBG00000018367	GFM1	97	81.931	Chrysemys_picta_bellii
ENSIPUG00000005873	gfm1	94	57.961	ENSCING00000011960	-	93	57.961	Ciona_intestinalis
ENSIPUG00000005873	gfm1	94	59.375	ENSCSAVG00000008514	-	100	57.601	Ciona_savignyi
ENSIPUG00000005873	gfm1	97	80.303	ENSCANG00000031714	GFM1	100	78.429	Colobus_angolensis_palliatus
ENSIPUG00000005873	gfm1	100	79.095	ENSCGRG00001022095	GFM1	97	80.690	Cricetulus_griseus_chok1gshd
ENSIPUG00000005873	gfm1	100	79.095	ENSCGRG00000012043	GFM1	97	80.690	Cricetulus_griseus_crigri
ENSIPUG00000005873	gfm1	97	79.391	ENSCSEG00000017088	gfm1	99	79.391	Cynoglossus_semilaevis
ENSIPUG00000005873	gfm1	100	86.497	ENSCVAG00000004126	gfm1	100	86.497	Cyprinodon_variegatus
ENSIPUG00000005873	gfm1	100	85.160	ENSDARG00000063624	gfm1	100	85.160	Danio_rerio
ENSIPUG00000005873	gfm1	55	79.951	ENSDNOG00000016385	-	100	79.951	Dasypus_novemcinctus
ENSIPUG00000005873	gfm1	100	77.793	ENSDORG00000014165	Gfm1	96	79.448	Dipodomys_ordii
ENSIPUG00000005873	gfm1	95	67.419	FBgn0263133	mEFG1	95	67.419	Drosophila_melanogaster
ENSIPUG00000005873	gfm1	97	72.802	ENSETEG00000019197	GFM1	96	72.802	Echinops_telfairi
ENSIPUG00000005873	gfm1	89	63.759	ENSEBUG00000012794	gfm1	99	63.759	Eptatretus_burgeri
ENSIPUG00000005873	gfm1	96	60.000	ENSEEUG00000000429	GFM1	99	60.000	Erinaceus_europaeus
ENSIPUG00000005873	gfm1	100	85.829	ENSELUG00000014728	gfm1	100	85.829	Esox_lucius
ENSIPUG00000005873	gfm1	97	80.716	ENSFCAG00000013291	GFM1	100	78.647	Felis_catus
ENSIPUG00000005873	gfm1	90	80.444	ENSFALG00000007619	GFM1	100	80.444	Ficedula_albicollis
ENSIPUG00000005873	gfm1	100	77.851	ENSFDAG00000016559	GFM1	96	79.752	Fukomys_damarensis
ENSIPUG00000005873	gfm1	100	85.695	ENSFHEG00000006091	gfm1	100	85.695	Fundulus_heteroclitus
ENSIPUG00000005873	gfm1	97	85.557	ENSGMOG00000010161	gfm1	100	85.557	Gadus_morhua
ENSIPUG00000005873	gfm1	97	79.862	ENSGALG00000009634	GFM1	98	79.862	Gallus_gallus
ENSIPUG00000005873	gfm1	100	86.631	ENSGAFG00000012527	gfm1	100	86.631	Gambusia_affinis
ENSIPUG00000005873	gfm1	99	84.091	ENSGACG00000009864	gfm1	99	84.091	Gasterosteus_aculeatus
ENSIPUG00000005873	gfm1	97	80.441	ENSGGOG00000003085	GFM1	100	78.562	Gorilla_gorilla
ENSIPUG00000005873	gfm1	100	84.759	ENSHBUG00000002120	gfm1	100	84.759	Haplochromis_burtoni
ENSIPUG00000005873	gfm1	97	79.477	ENSHGLG00000016855	GFM1	96	79.477	Heterocephalus_glaber_female
ENSIPUG00000005873	gfm1	97	79.477	ENSHGLG00100013049	GFM1	96	79.477	Heterocephalus_glaber_male
ENSIPUG00000005873	gfm1	100	83.556	ENSHCOG00000007638	gfm1	99	85.000	Hippocampus_comes
ENSIPUG00000005873	gfm1	97	79.201	ENSSTOG00000010150	GFM1	98	79.201	Ictidomys_tridecemlineatus
ENSIPUG00000005873	gfm1	100	78.029	ENSJJAG00000016447	Gfm1	97	79.586	Jaculus_jaculus
ENSIPUG00000005873	gfm1	100	82.754	ENSKMAG00000020768	gfm1	100	82.754	Kryptolebias_marmoratus
ENSIPUG00000005873	gfm1	94	85.877	ENSLBEG00000021315	gfm1	100	85.877	Labrus_bergylta
ENSIPUG00000005873	gfm1	100	80.882	ENSLACG00000012295	GFM1	98	82.573	Latimeria_chalumnae
ENSIPUG00000005873	gfm1	97	79.945	ENSLOCG00000003778	gfm1	99	79.945	Lepisosteus_oculatus
ENSIPUG00000005873	gfm1	97	79.034	ENSLAFG00000010945	GFM1	100	77.793	Loxodonta_africana
ENSIPUG00000005873	gfm1	100	78.828	ENSMFAG00000035731	GFM1	100	78.429	Macaca_fascicularis
ENSIPUG00000005873	gfm1	100	78.828	ENSMMUG00000004961	GFM1	100	78.429	Macaca_mulatta
ENSIPUG00000005873	gfm1	100	78.562	ENSMNEG00000033245	GFM1	100	78.296	Macaca_nemestrina
ENSIPUG00000005873	gfm1	97	78.897	ENSMLEG00000030908	GFM1	100	78.197	Mandrillus_leucophaeus
ENSIPUG00000005873	gfm1	100	84.893	ENSMAMG00000011760	gfm1	100	84.893	Mastacembelus_armatus
ENSIPUG00000005873	gfm1	100	84.893	ENSMZEG00005016639	gfm1	100	84.893	Maylandia_zebra
ENSIPUG00000005873	gfm1	97	80.110	ENSMGAG00000010641	GFM1	97	80.110	Meleagris_gallopavo
ENSIPUG00000005873	gfm1	100	78.961	ENSMAUG00000000611	Gfm1	97	80.828	Mesocricetus_auratus
ENSIPUG00000005873	gfm1	97	80.716	ENSMICG00000049086	GFM1	100	78.647	Microcebus_murinus
ENSIPUG00000005873	gfm1	100	78.961	ENSMOCG00000000465	Gfm1	97	80.690	Microtus_ochrogaster
ENSIPUG00000005873	gfm1	98	85.342	ENSMMOG00000012538	gfm1	99	85.342	Mola_mola
ENSIPUG00000005873	gfm1	97	79.172	ENSMODG00000015673	GFM1	98	79.172	Monodelphis_domestica
ENSIPUG00000005873	gfm1	96	84.284	ENSMALG00000012508	gfm1	96	84.284	Monopterus_albus
ENSIPUG00000005873	gfm1	100	78.296	MGP_CAROLIEiJ_G0025052	Gfm1	97	80.138	Mus_caroli
ENSIPUG00000005873	gfm1	100	78.029	ENSMUSG00000027774	Gfm1	97	79.862	Mus_musculus
ENSIPUG00000005873	gfm1	100	78.029	MGP_PahariEiJ_G0026495	Gfm1	97	79.862	Mus_pahari
ENSIPUG00000005873	gfm1	100	78.029	MGP_SPRETEiJ_G0025994	Gfm1	97	79.862	Mus_spretus
ENSIPUG00000005873	gfm1	100	79.576	ENSMPUG00000002859	GFM1	96	81.405	Mustela_putorius_furo
ENSIPUG00000005873	gfm1	100	79.045	ENSMLUG00000000452	GFM1	100	78.912	Myotis_lucifugus
ENSIPUG00000005873	gfm1	100	78.800	ENSNGAG00000012375	Gfm1	100	78.800	Nannospalax_galili
ENSIPUG00000005873	gfm1	97	86.126	ENSNBRG00000004631	gfm1	99	86.126	Neolamprologus_brichardi
ENSIPUG00000005873	gfm1	97	80.441	ENSNLEG00000004176	GFM1	97	80.441	Nomascus_leucogenys
ENSIPUG00000005873	gfm1	91	71.870	ENSMEUG00000007784	GFM1	99	71.870	Notamacropus_eugenii
ENSIPUG00000005873	gfm1	100	78.104	ENSOPRG00000009860	GFM1	98	79.614	Ochotona_princeps
ENSIPUG00000005873	gfm1	97	80.579	ENSODEG00000004316	GFM1	96	80.579	Octodon_degus
ENSIPUG00000005873	gfm1	100	84.626	ENSONIG00000003772	gfm1	100	84.626	Oreochromis_niloticus
ENSIPUG00000005873	gfm1	97	80.690	ENSOCUG00000013561	GFM1	96	80.690	Oryctolagus_cuniculus
ENSIPUG00000005873	gfm1	95	86.441	ENSORLG00000006487	gfm1	100	86.441	Oryzias_latipes
ENSIPUG00000005873	gfm1	100	84.626	ENSORLG00020003362	gfm1	100	84.626	Oryzias_latipes_hni
ENSIPUG00000005873	gfm1	100	84.225	ENSORLG00015005829	gfm1	100	84.225	Oryzias_latipes_hsok
ENSIPUG00000005873	gfm1	100	84.091	ENSOMEG00000012894	gfm1	100	84.091	Oryzias_melastigma
ENSIPUG00000005873	gfm1	97	80.028	ENSOGAG00000008298	GFM1	96	80.028	Otolemur_garnettii
ENSIPUG00000005873	gfm1	97	79.367	ENSOARG00000002409	GFM1	100	79.367	Ovis_aries
ENSIPUG00000005873	gfm1	97	80.441	ENSPPAG00000033881	GFM1	100	78.562	Pan_paniscus
ENSIPUG00000005873	gfm1	97	80.716	ENSPPRG00000009281	GFM1	100	78.647	Panthera_pardus
ENSIPUG00000005873	gfm1	97	80.579	ENSPTIG00000012416	GFM1	100	78.515	Panthera_tigris_altaica
ENSIPUG00000005873	gfm1	97	80.441	ENSPTRG00000015570	GFM1	100	78.562	Pan_troglodytes
ENSIPUG00000005873	gfm1	100	78.695	ENSPANG00000016512	GFM1	100	78.429	Papio_anubis
ENSIPUG00000005873	gfm1	100	82.754	ENSPKIG00000004876	gfm1	100	82.754	Paramormyrops_kingsleyae
ENSIPUG00000005873	gfm1	100	79.814	ENSPSIG00000012567	GFM1	97	81.630	Pelodiscus_sinensis
ENSIPUG00000005873	gfm1	97	83.034	ENSPMGG00000014068	gfm1	100	83.034	Periophthalmus_magnuspinnatus
ENSIPUG00000005873	gfm1	100	79.095	ENSPEMG00000008942	Gfm1	97	80.690	Peromyscus_maniculatus_bairdii
ENSIPUG00000005873	gfm1	86	75.625	ENSPCIG00000020195	GFM1	96	78.176	Phascolarctos_cinereus
ENSIPUG00000005873	gfm1	100	87.166	ENSPFOG00000011022	gfm1	100	87.166	Poecilia_formosa
ENSIPUG00000005873	gfm1	97	87.879	ENSPLAG00000019585	gfm1	100	86.236	Poecilia_latipinna
ENSIPUG00000005873	gfm1	100	87.032	ENSPMEG00000012376	gfm1	100	87.032	Poecilia_mexicana
ENSIPUG00000005873	gfm1	100	86.364	ENSPREG00000001332	gfm1	95	86.364	Poecilia_reticulata
ENSIPUG00000005873	gfm1	97	80.441	ENSPPYG00000014244	GFM1	100	78.562	Pongo_abelii
ENSIPUG00000005873	gfm1	94	79.801	ENSPCAG00000008934	GFM1	100	79.801	Procavia_capensis
ENSIPUG00000005873	gfm1	97	80.165	ENSPCOG00000022259	GFM1	100	78.117	Propithecus_coquereli
ENSIPUG00000005873	gfm1	97	79.890	ENSPVAG00000013605	GFM1	96	79.890	Pteropus_vampyrus
ENSIPUG00000005873	gfm1	100	84.492	ENSPNYG00000006037	gfm1	99	85.597	Pundamilia_nyererei
ENSIPUG00000005873	gfm1	100	91.043	ENSPNAG00000001237	gfm1	100	91.043	Pygocentrus_nattereri
ENSIPUG00000005873	gfm1	100	78.695	ENSRNOG00000012873	Gfm1	97	80.414	Rattus_norvegicus
ENSIPUG00000005873	gfm1	97	80.303	ENSRBIG00000031363	GFM1	100	78.429	Rhinopithecus_bieti
ENSIPUG00000005873	gfm1	97	80.441	ENSRROG00000031081	GFM1	100	78.562	Rhinopithecus_roxellana
ENSIPUG00000005873	gfm1	92	56.854	YLR069C	-	90	56.854	Saccharomyces_cerevisiae
ENSIPUG00000005873	gfm1	100	78.162	ENSSBOG00000023252	GFM1	100	77.896	Saimiri_boliviensis_boliviensis
ENSIPUG00000005873	gfm1	97	79.862	ENSSHAG00000017772	GFM1	97	79.862	Sarcophilus_harrisii
ENSIPUG00000005873	gfm1	100	83.578	ENSSFOG00015003117	gfm1	99	84.743	Scleropages_formosus
ENSIPUG00000005873	gfm1	100	83.957	ENSSMAG00000013221	gfm1	100	83.957	Scophthalmus_maximus
ENSIPUG00000005873	gfm1	100	85.027	ENSSDUG00000018665	gfm1	100	85.027	Seriola_dumerili
ENSIPUG00000005873	gfm1	100	84.893	ENSSLDG00000020606	gfm1	100	84.893	Seriola_lalandi_dorsalis
ENSIPUG00000005873	gfm1	97	77.747	ENSSPUG00000018686	GFM1	99	77.747	Sphenodon_punctatus
ENSIPUG00000005873	gfm1	100	86.230	ENSSPAG00000008800	gfm1	100	86.230	Stegastes_partitus
ENSIPUG00000005873	gfm1	97	80.414	ENSSSCG00000025651	GFM1	96	80.414	Sus_scrofa
ENSIPUG00000005873	gfm1	100	83.690	ENSTRUG00000009244	gfm1	100	83.690	Takifugu_rubripes
ENSIPUG00000005873	gfm1	100	85.428	ENSTNIG00000007729	gfm1	100	85.428	Tetraodon_nigroviridis
ENSIPUG00000005873	gfm1	90	72.593	ENSTBEG00000017404	GFM1	89	72.593	Tupaia_belangeri
ENSIPUG00000005873	gfm1	97	79.862	ENSTTRG00000001735	GFM1	96	79.862	Tursiops_truncatus
ENSIPUG00000005873	gfm1	97	80.992	ENSUAMG00000026381	GFM1	100	78.912	Ursus_americanus
ENSIPUG00000005873	gfm1	97	80.992	ENSUMAG00000011268	GFM1	100	78.912	Ursus_maritimus
ENSIPUG00000005873	gfm1	97	76.966	ENSVPAG00000009444	GFM1	100	75.033	Vicugna_pacos
ENSIPUG00000005873	gfm1	98	80.575	ENSVVUG00000020091	GFM1	100	81.509	Vulpes_vulpes
ENSIPUG00000005873	gfm1	100	80.053	ENSXETG00000032551	GFM1	96	82.386	Xenopus_tropicalis
ENSIPUG00000005873	gfm1	52	86.047	ENSXCOG00000012590	gfm1	89	86.047	Xiphophorus_couchianus
ENSIPUG00000005873	gfm1	100	87.166	ENSXMAG00000000261	gfm1	100	87.166	Xiphophorus_maculatus