EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000006107 (Gene tree)
Gene ID
108278850
Gene Symbol
smarca4a
Alias
brahma-related gene 1|brg1|smarca2|smarca4|wu:fb51a08|yng|young
Full Name
transcription activator BRG1
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
19856 bases
Position
chr2:12943128-12962983
Accession
108278850
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000009252ResIIIPF04851.152.9e-0811
ENSIPUP00000009202ResIIIPF04851.153.2e-0811
ENSIPUP00000009202BRKPF07533.161.1e-1611
ENSIPUP00000009252BRKPF07533.161.6e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000009605-7249XM_017492488ENSIPUP000000092021629 (aa)XP_017347977A0A2D0SZ98
ENSIPUT00000009657-4527-ENSIPUP000000092521508 (aa)--
Gene Model
Click here to download ENSIPUG00000006107's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006107's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000006107smarca4a9885.625ENSIPUG00000016346-9785.337
ENSIPUG00000006107smarca4a9774.702ENSIPUG00000011060smarca29375.431
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000006107smarca4a10087.942ENSG00000127616SMARCA410092.011Homo_sapiens
ENSIPUG00000006107smarca4a9584.793ENSAPOG00000004542SMARCA49986.111Acanthochromis_polyacanthus
ENSIPUG00000006107smarca4a7689.406ENSAPOG00000003509smarca4a9887.480Acanthochromis_polyacanthus
ENSIPUG00000006107smarca4a10082.924ENSAMEG00000010868SMARCA410083.880Ailuropoda_melanoleuca
ENSIPUG00000006107smarca4a9990.526ENSACIG00000021550smarca4a9890.588Amphilophus_citrinellus
ENSIPUG00000006107smarca4a9785.858ENSACIG00000003035-9786.135Amphilophus_citrinellus
ENSIPUG00000006107smarca4a9486.779ENSAOCG00000009450-9786.390Amphiprion_ocellaris
ENSIPUG00000006107smarca4a9189.971ENSAOCG00000019167smarca4a10090.634Amphiprion_ocellaris
ENSIPUG00000006107smarca4a10084.382ENSAPEG00000023108-9984.588Amphiprion_percula
ENSIPUG00000006107smarca4a9190.043ENSAPEG00000015559smarca4a10090.706Amphiprion_percula
ENSIPUG00000006107smarca4a9985.514ENSATEG00000001094-9885.941Anabas_testudineus
ENSIPUG00000006107smarca4a10089.438ENSATEG00000011524smarca4a10089.445Anabas_testudineus
ENSIPUG00000006107smarca4a9887.935ENSANAG00000036991SMARCA410084.858Aotus_nancymaae
ENSIPUG00000006107smarca4a9988.407ENSACLG00000000163smarca4a9889.647Astatotilapia_calliptera
ENSIPUG00000006107smarca4a9785.332ENSACLG00000008638-9885.504Astatotilapia_calliptera
ENSIPUG00000006107smarca4a9488.312ENSAMXG00000011238-9587.844Astyanax_mexicanus
ENSIPUG00000006107smarca4a9791.184ENSAMXG00000021023smarca4a9988.626Astyanax_mexicanus
ENSIPUG00000006107smarca4a10088.088ENSBTAG00000019220SMARCA410088.088Bos_taurus
ENSIPUG00000006107smarca4a10084.426ENSCJAG00000005936SMARCA410084.016Callithrix_jacchus
ENSIPUG00000006107smarca4a10087.949ENSCAFG00000017584SMARCA410088.010Canis_familiaris
ENSIPUG00000006107smarca4a10087.949ENSCAFG00020024620SMARCA49988.010Canis_lupus_dingo
ENSIPUG00000006107smarca4a10084.259ENSCHIG00000015318SMARCA410084.381Capra_hircus
ENSIPUG00000006107smarca4a10087.477ENSTSYG00000012966SMARCA410087.844Carlito_syrichta
ENSIPUG00000006107smarca4a9684.690ENSCAPG00000015932SMARCA49491.133Cavia_aperea
ENSIPUG00000006107smarca4a10087.766ENSCPOG00000015549SMARCA410087.766Cavia_porcellus
ENSIPUG00000006107smarca4a10084.797ENSCCAG00000031660SMARCA49985.039Cebus_capucinus
ENSIPUG00000006107smarca4a10087.888ENSCATG00000029530SMARCA410087.888Cercocebus_atys
ENSIPUG00000006107smarca4a10087.592ENSCLAG00000011946SMARCA410088.081Chinchilla_lanigera
ENSIPUG00000006107smarca4a10087.995ENSCPBG00000009994SMARCA410088.117Chrysemys_picta_bellii
ENSIPUG00000006107smarca4a10087.827ENSCANG00000036013SMARCA410087.888Colobus_angolensis_palliatus
ENSIPUG00000006107smarca4a10088.131ENSCGRG00001016732Smarca410088.131Cricetulus_griseus_chok1gshd
ENSIPUG00000006107smarca4a10088.131ENSCGRG00000017242Smarca410088.131Cricetulus_griseus_crigri
ENSIPUG00000006107smarca4a9689.037ENSCSEG00000014771smarca4a10089.425Cynoglossus_semilaevis
ENSIPUG00000006107smarca4a9983.179ENSCVAG00000003018-9883.621Cyprinodon_variegatus
ENSIPUG00000006107smarca4a9989.350ENSCVAG00000006979smarca4a9989.006Cyprinodon_variegatus
ENSIPUG00000006107smarca4a9285.401ENSDARG00000104339SMARCA49485.080Danio_rerio
ENSIPUG00000006107smarca4a10093.558ENSDARG00000077226smarca4a10092.778Danio_rerio
ENSIPUG00000006107smarca4a9782.905ENSDNOG00000048847SMARCA49091.866Dasypus_novemcinctus
ENSIPUG00000006107smarca4a8880.044ENSDORG00000002544Smarca49182.574Dipodomys_ordii
ENSIPUG00000006107smarca4a9675.584ENSETEG00000013361SMARCA49476.992Echinops_telfairi
ENSIPUG00000006107smarca4a10087.523ENSEASG00005006167SMARCA410085.816Equus_asinus_asinus
ENSIPUG00000006107smarca4a10087.584ENSECAG00000008334SMARCA410087.705Equus_caballus
ENSIPUG00000006107smarca4a9879.839ENSELUG00000023232-9778.487Esox_lucius
ENSIPUG00000006107smarca4a10089.461ENSELUG00000010247smarca4a10089.037Esox_lucius
ENSIPUG00000006107smarca4a10087.910ENSFCAG00000004894SMARCA410087.910Felis_catus
ENSIPUG00000006107smarca4a9383.789ENSFALG00000004208SMARCA49285.000Ficedula_albicollis
ENSIPUG00000006107smarca4a9485.453ENSFDAG00000012237SMARCA49787.857Fukomys_damarensis
ENSIPUG00000006107smarca4a10085.671ENSFHEG00000007902-9985.492Fundulus_heteroclitus
ENSIPUG00000006107smarca4a9688.568ENSFHEG00000010182smarca4a10087.848Fundulus_heteroclitus
ENSIPUG00000006107smarca4a9081.787ENSGMOG00000005756-9080.911Gadus_morhua
ENSIPUG00000006107smarca4a8887.288ENSGMOG00000002649smarca4a9485.417Gadus_morhua
ENSIPUG00000006107smarca4a7387.469ENSGALG00000047145SMARCA410087.137Gallus_gallus
ENSIPUG00000006107smarca4a9188.539ENSGAFG00000014900smarca4a10089.008Gambusia_affinis
ENSIPUG00000006107smarca4a9784.507ENSGAFG00000008827-9882.061Gambusia_affinis
ENSIPUG00000006107smarca4a9979.214ENSGACG00000016033-9679.443Gasterosteus_aculeatus
ENSIPUG00000006107smarca4a9888.716ENSGACG00000006691smarca4a10088.611Gasterosteus_aculeatus
ENSIPUG00000006107smarca4a10088.156ENSGAGG00000016757SMARCA410088.278Gopherus_agassizii
ENSIPUG00000006107smarca4a10087.888ENSGGOG00000009882SMARCA410087.888Gorilla_gorilla
ENSIPUG00000006107smarca4a10089.927ENSHBUG00000021172smarca4a10090.305Haplochromis_burtoni
ENSIPUG00000006107smarca4a10085.482ENSHBUG00000005447-9985.531Haplochromis_burtoni
ENSIPUG00000006107smarca4a10087.333ENSHGLG00000010519SMARCA410087.394Heterocephalus_glaber_female
ENSIPUG00000006107smarca4a10086.930ENSHGLG00100013774SMARCA410086.756Heterocephalus_glaber_male
ENSIPUG00000006107smarca4a9590.019ENSHCOG00000009510smarca4a9690.173Hippocampus_comes
ENSIPUG00000006107smarca4a10087.705ENSSTOG00000007939SMARCA410087.705Ictidomys_tridecemlineatus
ENSIPUG00000006107smarca4a10085.621ENSJJAG00000012877Smarca410085.561Jaculus_jaculus
ENSIPUG00000006107smarca4a10088.678ENSKMAG00000011931smarca4a10088.936Kryptolebias_marmoratus
ENSIPUG00000006107smarca4a10085.313ENSKMAG00000019518-9985.048Kryptolebias_marmoratus
ENSIPUG00000006107smarca4a9391.234ENSLBEG00000020655-9981.667Labrus_bergylta
ENSIPUG00000006107smarca4a9786.062ENSLBEG00000017383smarca4a9787.404Labrus_bergylta
ENSIPUG00000006107smarca4a5281.170ENSLACG00000015309SMARCA410081.754Latimeria_chalumnae
ENSIPUG00000006107smarca4a10086.361ENSLOCG00000007820smarca4a9986.789Lepisosteus_oculatus
ENSIPUG00000006107smarca4a10087.728ENSLAFG00000001433SMARCA410087.728Loxodonta_africana
ENSIPUG00000006107smarca4a10087.888ENSMFAG00000032146SMARCA49987.888Macaca_fascicularis
ENSIPUG00000006107smarca4a10087.888ENSMMUG00000012042SMARCA410087.888Macaca_mulatta
ENSIPUG00000006107smarca4a10087.934ENSMNEG00000028512SMARCA410087.934Macaca_nemestrina
ENSIPUG00000006107smarca4a10087.827ENSMLEG00000034976SMARCA410087.667Mandrillus_leucophaeus
ENSIPUG00000006107smarca4a10089.921ENSMAMG00000009256smarca4a10090.409Mastacembelus_armatus
ENSIPUG00000006107smarca4a9984.322ENSMAMG00000002841-9886.985Mastacembelus_armatus
ENSIPUG00000006107smarca4a10089.811ENSMZEG00005003889smarca4a10090.189Maylandia_zebra
ENSIPUG00000006107smarca4a9586.185ENSMZEG00005023861-9885.986Maylandia_zebra
ENSIPUG00000006107smarca4a10087.910ENSMAUG00000020731Smarca410087.849Mesocricetus_auratus
ENSIPUG00000006107smarca4a10087.728ENSMICG00000009806SMARCA410087.728Microcebus_murinus
ENSIPUG00000006107smarca4a10087.667ENSMOCG00000022209Smarca410087.667Microtus_ochrogaster
ENSIPUG00000006107smarca4a9785.081ENSMMOG00000008466-9881.525Mola_mola
ENSIPUG00000006107smarca4a9588.546ENSMMOG00000007571smarca4a9888.860Mola_mola
ENSIPUG00000006107smarca4a10086.277ENSMODG00000006287SMARCA410086.304Monodelphis_domestica
ENSIPUG00000006107smarca4a9690.253ENSMALG00000003388smarca4a10090.415Monopterus_albus
ENSIPUG00000006107smarca4a9184.375ENSMALG00000021534-9984.972Monopterus_albus
ENSIPUG00000006107smarca4a10087.942MGP_CAROLIEiJ_G0031879Smarca410087.942Mus_caroli
ENSIPUG00000006107smarca4a10087.942ENSMUSG00000032187Smarca410087.942Mus_musculus
ENSIPUG00000006107smarca4a10088.325MGP_PahariEiJ_G0014745Smarca410088.325Mus_pahari
ENSIPUG00000006107smarca4a10087.942MGP_SPRETEiJ_G0033003Smarca410087.942Mus_spretus
ENSIPUG00000006107smarca4a10087.949ENSMPUG00000005711SMARCA410087.949Mustela_putorius_furo
ENSIPUG00000006107smarca4a10087.949ENSMLUG00000004491-10087.827Myotis_lucifugus
ENSIPUG00000006107smarca4a10087.797ENSNGAG00000021852Smarca410087.675Nannospalax_galili
ENSIPUG00000006107smarca4a9790.521ENSNBRG00000011457smarca4a9690.928Neolamprologus_brichardi
ENSIPUG00000006107smarca4a9185.378ENSNBRG00000018865-9985.491Neolamprologus_brichardi
ENSIPUG00000006107smarca4a9783.648ENSNLEG00000012389SMARCA49485.375Nomascus_leucogenys
ENSIPUG00000006107smarca4a8396.552ENSOPRG00000000885-7896.552Ochotona_princeps
ENSIPUG00000006107smarca4a10085.524ENSODEG00000017127SMARCA410084.961Octodon_degus
ENSIPUG00000006107smarca4a10085.602ENSONIG00000018040-9985.653Oreochromis_niloticus
ENSIPUG00000006107smarca4a10089.847ENSONIG00000008196smarca4a10090.061Oreochromis_niloticus
ENSIPUG00000006107smarca4a9882.397ENSOCUG00000001787SMARCA49882.103Oryctolagus_cuniculus
ENSIPUG00000006107smarca4a10088.739ENSORLG00000015452smarca4a10088.415Oryzias_latipes
ENSIPUG00000006107smarca4a9585.506ENSORLG00000003955-9985.018Oryzias_latipes
ENSIPUG00000006107smarca4a10088.372ENSORLG00020004611smarca4a10088.415Oryzias_latipes_hni
ENSIPUG00000006107smarca4a9585.515ENSORLG00020009728-9984.967Oryzias_latipes_hni
ENSIPUG00000006107smarca4a10088.372ENSORLG00015016560smarca4a10088.354Oryzias_latipes_hsok
ENSIPUG00000006107smarca4a9985.009ENSORLG00015007739-9984.775Oryzias_latipes_hsok
ENSIPUG00000006107smarca4a9684.950ENSOMEG00000016626-9985.018Oryzias_melastigma
ENSIPUG00000006107smarca4a10088.964ENSOMEG00000007486smarca4a10088.943Oryzias_melastigma
ENSIPUG00000006107smarca4a9086.490ENSOGAG00000016148SMARCA410086.558Otolemur_garnettii
ENSIPUG00000006107smarca4a10087.416ENSOARG00000017454SMARCA49787.816Ovis_aries
ENSIPUG00000006107smarca4a10087.888ENSPPAG00000043191SMARCA410087.888Pan_paniscus
ENSIPUG00000006107smarca4a10087.910ENSPPRG00000000064SMARCA410087.910Panthera_pardus
ENSIPUG00000006107smarca4a9387.724ENSPTIG00000017447SMARCA410081.481Panthera_tigris_altaica
ENSIPUG00000006107smarca4a10087.888ENSPTRG00000010488SMARCA410087.888Pan_troglodytes
ENSIPUG00000006107smarca4a10087.995ENSPANG00000011042SMARCA49987.995Papio_anubis
ENSIPUG00000006107smarca4a10091.182ENSPKIG00000007770SMARCA410090.648Paramormyrops_kingsleyae
ENSIPUG00000006107smarca4a10087.576ENSPKIG00000010087-9787.823Paramormyrops_kingsleyae
ENSIPUG00000006107smarca4a10082.676ENSPSIG00000005547SMARCA410082.705Pelodiscus_sinensis
ENSIPUG00000006107smarca4a10087.789ENSPEMG00000020389Smarca410087.789Peromyscus_maniculatus_bairdii
ENSIPUG00000006107smarca4a10087.895ENSPCIG00000017138SMARCA410088.476Phascolarctos_cinereus
ENSIPUG00000006107smarca4a10087.629ENSPFOG00000007892smarca4a10087.659Poecilia_formosa
ENSIPUG00000006107smarca4a10085.081ENSPFOG00000012930-9985.159Poecilia_formosa
ENSIPUG00000006107smarca4a9982.958ENSPLAG00000018616-9886.262Poecilia_latipinna
ENSIPUG00000006107smarca4a10087.750ENSPLAG00000014294smarca4a10087.780Poecilia_latipinna
ENSIPUG00000006107smarca4a9785.705ENSPMEG00000008929-9884.429Poecilia_mexicana
ENSIPUG00000006107smarca4a9588.393ENSPMEG00000003725smarca4a9688.408Poecilia_mexicana
ENSIPUG00000006107smarca4a9784.303ENSPREG00000014823-9686.066Poecilia_reticulata
ENSIPUG00000006107smarca4a9985.050ENSPREG00000014608smarca4a10087.862Poecilia_reticulata
ENSIPUG00000006107smarca4a10086.098ENSPPYG00000009568SMARCA410085.621Pongo_abelii
ENSIPUG00000006107smarca4a7795.604ENSPCAG00000014054SMARCA47395.506Procavia_capensis
ENSIPUG00000006107smarca4a10087.705ENSPCOG00000023011SMARCA410087.667Propithecus_coquereli
ENSIPUG00000006107smarca4a9683.124ENSPVAG00000007787SMARCA49682.944Pteropus_vampyrus
ENSIPUG00000006107smarca4a9790.149ENSPNYG00000000717smarca4a9690.629Pundamilia_nyererei
ENSIPUG00000006107smarca4a9785.389ENSPNYG00000023995-9885.733Pundamilia_nyererei
ENSIPUG00000006107smarca4a9588.232ENSPNAG00000006636-9387.558Pygocentrus_nattereri
ENSIPUG00000006107smarca4a9792.209ENSPNAG00000024136smarca4a9492.334Pygocentrus_nattereri
ENSIPUG00000006107smarca4a10087.942ENSRNOG00000009271Smarca410087.942Rattus_norvegicus
ENSIPUG00000006107smarca4a10087.827ENSRBIG00000038696SMARCA49987.827Rhinopithecus_bieti
ENSIPUG00000006107smarca4a10087.827ENSRROG00000045509SMARCA410087.827Rhinopithecus_roxellana
ENSIPUG00000006107smarca4a10087.637ENSSBOG00000026896SMARCA49888.272Saimiri_boliviensis_boliviensis
ENSIPUG00000006107smarca4a10087.713ENSSHAG00000001642SMARCA410088.293Sarcophilus_harrisii
ENSIPUG00000006107smarca4a9685.515ENSSFOG00015009921-9683.875Scleropages_formosus
ENSIPUG00000006107smarca4a10091.254ENSSFOG00015013823smarca410090.262Scleropages_formosus
ENSIPUG00000006107smarca4a10088.996ENSSMAG00000003200smarca4a10088.996Scophthalmus_maximus
ENSIPUG00000006107smarca4a10082.388ENSSMAG00000014082-9983.546Scophthalmus_maximus
ENSIPUG00000006107smarca4a9986.943ENSSDUG00000005388-9885.750Seriola_dumerili
ENSIPUG00000006107smarca4a10084.061ENSSDUG00000017298smarca4a10085.350Seriola_dumerili
ENSIPUG00000006107smarca4a9785.079ENSSLDG00000023663-9787.057Seriola_lalandi_dorsalis
ENSIPUG00000006107smarca4a10089.709ENSSLDG00000024486smarca4a10089.567Seriola_lalandi_dorsalis
ENSIPUG00000006107smarca4a6296.894ENSSARG00000013477SMARCA48196.894Sorex_araneus
ENSIPUG00000006107smarca4a9783.095ENSSPUG00000004558SMARCA49884.620Sphenodon_punctatus
ENSIPUG00000006107smarca4a10089.346ENSSPAG00000004248smarca4a10089.165Stegastes_partitus
ENSIPUG00000006107smarca4a10084.086ENSSPAG00000012533-9984.847Stegastes_partitus
ENSIPUG00000006107smarca4a10087.849ENSSSCG00000013629SMARCA410087.849Sus_scrofa
ENSIPUG00000006107smarca4a5582.800ENSTGUG00000015488-9884.211Taeniopygia_guttata
ENSIPUG00000006107smarca4a9584.439ENSTRUG00000001378SMARCA49884.576Takifugu_rubripes
ENSIPUG00000006107smarca4a9184.954ENSTRUG00000004885smarca4a10085.319Takifugu_rubripes
ENSIPUG00000006107smarca4a10083.252ENSTNIG00000004536SMARCA49983.200Tetraodon_nigroviridis
ENSIPUG00000006107smarca4a7387.589ENSTNIG00000004859-10086.525Tetraodon_nigroviridis
ENSIPUG00000006107smarca4a10084.528ENSTTRG00000009519SMARCA410084.349Tursiops_truncatus
ENSIPUG00000006107smarca4a10088.010ENSUAMG00000014661SMARCA410088.010Ursus_americanus
ENSIPUG00000006107smarca4a9786.863ENSUMAG00000022005SMARCA49991.459Ursus_maritimus
ENSIPUG00000006107smarca4a10087.949ENSVVUG00000017820SMARCA49788.010Vulpes_vulpes
ENSIPUG00000006107smarca4a10083.034ENSXETG00000009355smarca410082.734Xenopus_tropicalis
ENSIPUG00000006107smarca4a9786.644ENSXCOG00000013494-9487.458Xiphophorus_couchianus
ENSIPUG00000006107smarca4a10085.663ENSXMAG00000007030-9985.783Xiphophorus_maculatus
ENSIPUG00000006107smarca4a10087.842ENSXMAG00000006321smarca4a10088.207Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us