EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000006238 (Gene tree)
Gene ID: 108266078
Gene Symbol: pcbp3
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 39218 bases
Position: chr6:3114966-3154183
Accession: 108266078
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000009169	KH_1	PF00013.29	5.3e-54	1	3
ENSIPUP00000009169	KH_1	PF00013.29	5.3e-54	2	3
ENSIPUP00000009169	KH_1	PF00013.29	5.3e-54	3	3
ENSIPUP00000009189	KH_1	PF00013.29	3.9e-50	1	3
ENSIPUP00000009189	KH_1	PF00013.29	3.9e-50	2	3
ENSIPUP00000009189	KH_1	PF00013.29	3.9e-50	3	3
ENSIPUP00000009169	KH_2	PF07650.17	4.8e-14	1	1
ENSIPUP00000009189	KH_2	PF07650.17	1.4e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000009590	-	942	-	ENSIPUP00000009189	313 (aa)	-	-
ENSIPUT00000009568	-	4092	XM_017469058	ENSIPUP00000009169	344 (aa)	XP_017324547	A0A2D0R1P0

Gene Model

Click here to download ENSIPUG00000006238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000006238	pcbp3	72	35.294	ENSIPUG00000009896	fubp1	51	35.294
ENSIPUG00000006238	pcbp3	90	40.845	ENSIPUG00000018651	nova1	84	30.000
ENSIPUG00000006238	pcbp3	94	67.320	ENSIPUG00000008212	pcbp4	90	59.366
ENSIPUG00000006238	pcbp3	90	40.845	ENSIPUG00000019551	nova2	81	31.977
ENSIPUG00000006238	pcbp3	94	35.338	ENSIPUG00000022106	Igf2bp2	60	35.338
ENSIPUG00000006238	pcbp3	93	31.507	ENSIPUG00000002561	igf2bp1	57	31.507
ENSIPUG00000006238	pcbp3	84	70.044	ENSIPUG00000003932	zgc:110045	77	70.335
ENSIPUG00000006238	pcbp3	95	31.461	ENSIPUG00000006070	igf2bp3	67	31.461
ENSIPUG00000006238	pcbp3	67	38.235	ENSIPUG00000008034	khsrp	63	37.500
ENSIPUG00000006238	pcbp3	99	76.947	ENSIPUG00000024819	pcbp2	99	76.947
ENSIPUG00000006238	pcbp3	74	52.857	ENSIPUG00000017608	hnrpkl	58	52.857
ENSIPUG00000006238	pcbp3	77	49.315	ENSIPUG00000008973	HNRNPK	63	49.315

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000006238	pcbp3	99	95.161	ENSAPOG00000020003	pcbp3	89	95.161	Acanthochromis_polyacanthus
ENSIPUG00000006238	pcbp3	100	95.062	ENSAPOG00000016582	-	100	95.062	Acanthochromis_polyacanthus
ENSIPUG00000006238	pcbp3	99	89.614	ENSAMEG00000001697	-	99	88.920	Ailuropoda_melanoleuca
ENSIPUG00000006238	pcbp3	100	94.462	ENSACIG00000002739	-	100	94.462	Amphilophus_citrinellus
ENSIPUG00000006238	pcbp3	99	92.128	ENSACIG00000010933	pcbp3	98	92.128	Amphilophus_citrinellus
ENSIPUG00000006238	pcbp3	90	94.198	ENSAOCG00000007806	-	100	94.198	Amphiprion_ocellaris
ENSIPUG00000006238	pcbp3	96	94.516	ENSAOCG00000008592	-	98	94.516	Amphiprion_ocellaris
ENSIPUG00000006238	pcbp3	100	96.552	ENSAPEG00000005209	-	100	96.552	Amphiprion_percula
ENSIPUG00000006238	pcbp3	97	95.833	ENSAPEG00000008011	pcbp3	95	95.833	Amphiprion_percula
ENSIPUG00000006238	pcbp3	97	94.294	ENSATEG00000015787	-	100	94.294	Anabas_testudineus
ENSIPUG00000006238	pcbp3	100	97.468	ENSATEG00000009833	-	100	97.468	Anabas_testudineus
ENSIPUG00000006238	pcbp3	95	81.818	ENSAPLG00000008951	-	79	81.818	Anas_platyrhynchos
ENSIPUG00000006238	pcbp3	99	90.964	ENSAPLG00000002975	-	99	90.964	Anas_platyrhynchos
ENSIPUG00000006238	pcbp3	99	92.244	ENSACAG00000004607	-	99	92.244	Anolis_carolinensis
ENSIPUG00000006238	pcbp3	98	88.131	ENSACAG00000009819	-	98	88.131	Anolis_carolinensis
ENSIPUG00000006238	pcbp3	96	89.680	ENSANAG00000030702	-	100	97.479	Aotus_nancymaae
ENSIPUG00000006238	pcbp3	99	93.913	ENSACLG00000011835	pcbp3	98	93.913	Astatotilapia_calliptera
ENSIPUG00000006238	pcbp3	100	97.764	ENSACLG00000003801	-	100	97.764	Astatotilapia_calliptera
ENSIPUG00000006238	pcbp3	96	95.364	ENSAMXG00000013588	-	100	95.364	Astyanax_mexicanus
ENSIPUG00000006238	pcbp3	97	98.802	ENSAMXG00000003440	pcbp3	95	98.802	Astyanax_mexicanus
ENSIPUG00000006238	pcbp3	95	69.565	ENSAMXG00000001760	zgc:110045	72	69.565	Astyanax_mexicanus
ENSIPUG00000006238	pcbp3	91	93.991	ENSCAFG00020019472	-	83	93.991	Canis_lupus_dingo
ENSIPUG00000006238	pcbp3	99	95.283	ENSCSAG00000007440	-	90	95.283	Chlorocebus_sabaeus
ENSIPUG00000006238	pcbp3	96	95.455	ENSCPBG00000012151	-	99	89.645	Chrysemys_picta_bellii
ENSIPUG00000006238	pcbp3	95	88.626	ENSCPBG00000000733	-	72	88.073	Chrysemys_picta_bellii
ENSIPUG00000006238	pcbp3	96	96.358	ENSCSEG00000000822	pcbp3	99	96.358	Cynoglossus_semilaevis
ENSIPUG00000006238	pcbp3	100	79.941	ENSCSEG00000016984	-	100	79.941	Cynoglossus_semilaevis
ENSIPUG00000006238	pcbp3	100	96.552	ENSCVAG00000005262	-	100	96.552	Cyprinodon_variegatus
ENSIPUG00000006238	pcbp3	97	95.536	ENSCVAG00000014482	pcbp3	95	95.536	Cyprinodon_variegatus
ENSIPUG00000006238	pcbp3	100	99.128	ENSDARG00000054378	pcbp3	100	99.128	Danio_rerio
ENSIPUG00000006238	pcbp3	99	83.333	ENSETEG00000015988	-	99	83.333	Echinops_telfairi
ENSIPUG00000006238	pcbp3	97	78.549	ENSEBUG00000007485	-	94	76.652	Eptatretus_burgeri
ENSIPUG00000006238	pcbp3	96	67.987	ENSEBUG00000016192	pcbp3	99	73.978	Eptatretus_burgeri
ENSIPUG00000006238	pcbp3	93	66.932	ENSEBUG00000005495	pcbp3	75	66.932	Eptatretus_burgeri
ENSIPUG00000006238	pcbp3	97	95.846	ENSELUG00000003521	pcbp3	95	95.846	Esox_lucius
ENSIPUG00000006238	pcbp3	97	95.177	ENSELUG00000001560	-	99	85.920	Esox_lucius
ENSIPUG00000006238	pcbp3	99	94.340	ENSFALG00000003949	-	99	94.340	Ficedula_albicollis
ENSIPUG00000006238	pcbp3	95	82.102	ENSFALG00000004411	-	74	82.102	Ficedula_albicollis
ENSIPUG00000006238	pcbp3	97	96.393	ENSFHEG00000016615	pcbp3	96	96.393	Fundulus_heteroclitus
ENSIPUG00000006238	pcbp3	100	96.865	ENSFHEG00000006539	-	100	96.865	Fundulus_heteroclitus
ENSIPUG00000006238	pcbp3	97	78.209	ENSGMOG00000011992	pcbp3	97	78.209	Gadus_morhua
ENSIPUG00000006238	pcbp3	96	70.000	ENSGMOG00000008611	-	99	70.000	Gadus_morhua
ENSIPUG00000006238	pcbp3	99	86.257	ENSGALG00000013155	-	99	84.731	Gallus_gallus
ENSIPUG00000006238	pcbp3	99	89.751	ENSGALG00000004394	-	99	89.751	Gallus_gallus
ENSIPUG00000006238	pcbp3	100	90.698	ENSGAFG00000011430	pcbp3	99	90.698	Gambusia_affinis
ENSIPUG00000006238	pcbp3	97	95.177	ENSGAFG00000010274	-	95	95.177	Gambusia_affinis
ENSIPUG00000006238	pcbp3	100	88.596	ENSGACG00000002266	-	100	88.596	Gasterosteus_aculeatus
ENSIPUG00000006238	pcbp3	100	80.769	ENSGACG00000014955	-	100	80.769	Gasterosteus_aculeatus
ENSIPUG00000006238	pcbp3	80	88.479	ENSGAGG00000006956	-	87	88.479	Gopherus_agassizii
ENSIPUG00000006238	pcbp3	92	86.992	ENSGAGG00000000271	-	100	89.888	Gopherus_agassizii
ENSIPUG00000006238	pcbp3	100	97.764	ENSHBUG00000021782	-	100	97.764	Haplochromis_burtoni
ENSIPUG00000006238	pcbp3	99	93.623	ENSHBUG00000010697	pcbp3	98	93.871	Haplochromis_burtoni
ENSIPUG00000006238	pcbp3	97	95.821	ENSHCOG00000017868	pcbp3	95	95.821	Hippocampus_comes
ENSIPUG00000006238	pcbp3	100	90.654	ENSHCOG00000006067	-	100	90.654	Hippocampus_comes
ENSIPUG00000006238	pcbp3	97	94.212	ENSKMAG00000018530	-	100	89.264	Kryptolebias_marmoratus
ENSIPUG00000006238	pcbp3	97	95.833	ENSKMAG00000003046	pcbp3	95	95.833	Kryptolebias_marmoratus
ENSIPUG00000006238	pcbp3	99	94.249	ENSLBEG00000006201	pcbp3	98	94.249	Labrus_bergylta
ENSIPUG00000006238	pcbp3	100	82.663	ENSLBEG00000006542	-	100	82.663	Labrus_bergylta
ENSIPUG00000006238	pcbp3	95	81.662	ENSLACG00000010804	zgc:110045	74	81.662	Latimeria_chalumnae
ENSIPUG00000006238	pcbp3	96	90.395	ENSLACG00000010386	pcbp3	74	90.395	Latimeria_chalumnae
ENSIPUG00000006238	pcbp3	95	87.462	ENSLOCG00000005058	zgc:110045	80	87.462	Lepisosteus_oculatus
ENSIPUG00000006238	pcbp3	99	98.534	ENSLOCG00000009369	pcbp3	99	98.534	Lepisosteus_oculatus
ENSIPUG00000006238	pcbp3	100	96.203	ENSMAMG00000011620	-	100	96.203	Mastacembelus_armatus
ENSIPUG00000006238	pcbp3	96	96.689	ENSMAMG00000022336	pcbp3	93	96.689	Mastacembelus_armatus
ENSIPUG00000006238	pcbp3	97	89.490	ENSMZEG00005014882	-	100	85.965	Maylandia_zebra
ENSIPUG00000006238	pcbp3	99	92.128	ENSMZEG00005008993	pcbp3	98	93.114	Maylandia_zebra
ENSIPUG00000006238	pcbp3	97	81.564	ENSMGAG00000006794	-	75	81.564	Meleagris_gallopavo
ENSIPUG00000006238	pcbp3	96	82.000	ENSMGAG00000001883	-	96	82.000	Meleagris_gallopavo
ENSIPUG00000006238	pcbp3	96	91.987	ENSMMOG00000000730	pcbp3	88	91.987	Mola_mola
ENSIPUG00000006238	pcbp3	100	97.444	ENSMMOG00000005216	-	100	97.444	Mola_mola
ENSIPUG00000006238	pcbp3	73	88.785	ENSMODG00000027884	-	93	88.785	Monodelphis_domestica
ENSIPUG00000006238	pcbp3	97	93.994	ENSMALG00000000691	pcbp3	95	93.994	Monopterus_albus
ENSIPUG00000006238	pcbp3	99	86.053	ENSMPUG00000001779	-	91	86.053	Mustela_putorius_furo
ENSIPUG00000006238	pcbp3	99	91.837	ENSNBRG00000016409	-	98	91.837	Neolamprologus_brichardi
ENSIPUG00000006238	pcbp3	98	89.474	ENSNBRG00000016714	-	99	89.474	Neolamprologus_brichardi
ENSIPUG00000006238	pcbp3	94	88.986	ENSOPRG00000003431	-	99	88.986	Ochotona_princeps
ENSIPUG00000006238	pcbp3	100	95.327	ENSONIG00000004611	-	100	95.327	Oreochromis_niloticus
ENSIPUG00000006238	pcbp3	97	90.652	ENSONIG00000012122	-	98	90.652	Oreochromis_niloticus
ENSIPUG00000006238	pcbp3	99	94.340	ENSOCUG00000002696	-	90	94.340	Oryctolagus_cuniculus
ENSIPUG00000006238	pcbp3	100	95.950	ENSORLG00000022739	-	100	95.950	Oryzias_latipes
ENSIPUG00000006238	pcbp3	96	94.516	ENSORLG00000000059	pcbp3	100	94.516	Oryzias_latipes
ENSIPUG00000006238	pcbp3	99	93.103	ENSORLG00020012671	pcbp3	99	93.103	Oryzias_latipes_hni
ENSIPUG00000006238	pcbp3	100	98.083	ENSORLG00020006124	-	100	98.083	Oryzias_latipes_hni
ENSIPUG00000006238	pcbp3	99	93.103	ENSORLG00015000429	pcbp3	99	93.103	Oryzias_latipes_hsok
ENSIPUG00000006238	pcbp3	99	94.062	ENSORLG00015008051	-	98	94.062	Oryzias_latipes_hsok
ENSIPUG00000006238	pcbp3	92	95.470	ENSOMEG00000020811	pcbp3	98	95.470	Oryzias_melastigma
ENSIPUG00000006238	pcbp3	100	97.764	ENSOMEG00000020162	-	100	97.764	Oryzias_melastigma
ENSIPUG00000006238	pcbp3	99	85.286	ENSOGAG00000008044	-	99	85.286	Otolemur_garnettii
ENSIPUG00000006238	pcbp3	100	97.143	ENSPKIG00000019329	pcbp3	100	97.143	Paramormyrops_kingsleyae
ENSIPUG00000006238	pcbp3	78	87.363	ENSPKIG00000020913	-	91	79.524	Paramormyrops_kingsleyae
ENSIPUG00000006238	pcbp3	99	81.548	ENSPSIG00000014970	-	99	82.388	Pelodiscus_sinensis
ENSIPUG00000006238	pcbp3	92	86.992	ENSPSIG00000008350	-	68	86.992	Pelodiscus_sinensis
ENSIPUG00000006238	pcbp3	97	96.687	ENSPMGG00000022383	pcbp3	95	96.687	Periophthalmus_magnuspinnatus
ENSIPUG00000006238	pcbp3	99	70.679	ENSPMAG00000004551	pcbp3	93	70.679	Petromyzon_marinus
ENSIPUG00000006238	pcbp3	77	84.043	ENSPMAG00000004637	-	97	88.298	Petromyzon_marinus
ENSIPUG00000006238	pcbp3	99	97.361	ENSPCIG00000028092	-	99	97.361	Phascolarctos_cinereus
ENSIPUG00000006238	pcbp3	100	85.440	ENSPLAG00000011449	pcbp3	91	85.440	Poecilia_latipinna
ENSIPUG00000006238	pcbp3	99	94.099	ENSPLAG00000004074	-	92	94.099	Poecilia_latipinna
ENSIPUG00000006238	pcbp3	97	95.536	ENSPMEG00000021239	pcbp3	95	95.536	Poecilia_mexicana
ENSIPUG00000006238	pcbp3	99	91.071	ENSPMEG00000006653	-	99	91.071	Poecilia_mexicana
ENSIPUG00000006238	pcbp3	96	94.737	ENSPREG00000015736	pcbp3	99	94.737	Poecilia_reticulata
ENSIPUG00000006238	pcbp3	100	97.764	ENSPREG00000020585	-	100	97.764	Poecilia_reticulata
ENSIPUG00000006238	pcbp3	96	94.194	ENSPNYG00000012326	pcbp3	95	94.194	Pundamilia_nyererei
ENSIPUG00000006238	pcbp3	100	97.764	ENSPNYG00000013205	-	100	97.764	Pundamilia_nyererei
ENSIPUG00000006238	pcbp3	99	93.605	ENSPNAG00000008541	-	98	96.000	Pygocentrus_nattereri
ENSIPUG00000006238	pcbp3	100	96.885	ENSPNAG00000015104	pcbp3	100	96.885	Pygocentrus_nattereri
ENSIPUG00000006238	pcbp3	99	94.969	ENSRNOG00000001245	Pcbp3	99	94.969	Rattus_norvegicus
ENSIPUG00000006238	pcbp3	99	85.758	ENSRBIG00000028177	-	99	81.769	Rhinopithecus_bieti
ENSIPUG00000006238	pcbp3	99	89.053	ENSSHAG00000007890	-	99	89.053	Sarcophilus_harrisii
ENSIPUG00000006238	pcbp3	97	96.707	ENSSFOG00015014706	pcbp3	95	96.707	Scleropages_formosus
ENSIPUG00000006238	pcbp3	97	96.096	ENSSFOG00015010205	pcbp3	100	96.096	Scleropages_formosus
ENSIPUG00000006238	pcbp3	97	83.974	ENSSFOG00015007118	-	95	83.974	Scleropages_formosus
ENSIPUG00000006238	pcbp3	100	95.912	ENSSMAG00000003135	-	100	95.912	Scophthalmus_maximus
ENSIPUG00000006238	pcbp3	96	97.020	ENSSMAG00000011929	pcbp3	97	97.020	Scophthalmus_maximus
ENSIPUG00000006238	pcbp3	97	93.433	ENSSDUG00000011608	pcbp3	99	93.433	Seriola_dumerili
ENSIPUG00000006238	pcbp3	97	91.640	ENSSDUG00000008502	-	95	91.640	Seriola_dumerili
ENSIPUG00000006238	pcbp3	97	95.498	ENSSLDG00000020161	-	95	95.498	Seriola_lalandi_dorsalis
ENSIPUG00000006238	pcbp3	97	93.433	ENSSLDG00000008518	pcbp3	99	93.433	Seriola_lalandi_dorsalis
ENSIPUG00000006238	pcbp3	92	86.851	ENSSPUG00000013214	-	91	86.851	Sphenodon_punctatus
ENSIPUG00000006238	pcbp3	97	82.934	ENSSPAG00000023341	-	95	82.934	Stegastes_partitus
ENSIPUG00000006238	pcbp3	90	94.539	ENSSPAG00000004190	-	100	94.539	Stegastes_partitus
ENSIPUG00000006238	pcbp3	99	86.982	ENSTGUG00000003316	-	99	86.982	Taeniopygia_guttata
ENSIPUG00000006238	pcbp3	98	87.898	ENSTGUG00000008158	-	99	87.898	Taeniopygia_guttata
ENSIPUG00000006238	pcbp3	99	92.628	ENSTRUG00000006280	-	99	92.628	Takifugu_rubripes
ENSIPUG00000006238	pcbp3	97	91.022	ENSTRUG00000013604	pcbp3	99	90.222	Takifugu_rubripes
ENSIPUG00000006238	pcbp3	99	89.751	ENSTTRG00000015075	-	99	89.751	Tursiops_truncatus
ENSIPUG00000006238	pcbp3	93	80.769	ENSXETG00000010491	pcbp2	74	80.769	Xenopus_tropicalis
ENSIPUG00000006238	pcbp3	98	87.725	ENSXETG00000011483	pcbp1	99	87.725	Xenopus_tropicalis
ENSIPUG00000006238	pcbp3	97	95.536	ENSXCOG00000020481	pcbp3	95	95.536	Xiphophorus_couchianus
ENSIPUG00000006238	pcbp3	97	95.833	ENSXMAG00000008175	pcbp3	95	95.833	Xiphophorus_maculatus
ENSIPUG00000006238	pcbp3	97	95.498	ENSXMAG00000028711	-	100	91.343	Xiphophorus_maculatus