EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000006311 (Gene tree)
Gene ID: 108267531
Gene Symbol: arf1
Alias: wu:fb33e02|wu:fb78h01
Full Name: ADP ribosylation factor 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 8597 bases
Position: chr7:30769900-30778496
Accession: 108267531
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000009306	MMR_HSR1	PF01926.23	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000009713	-	5745	XM_017471667	ENSIPUP00000009306	180 (aa)	XP_017327156	A0A2D0RAM1

Gene Model

Click here to download ENSIPUG00000006311's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006311's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000006311	arf1	100	95.580	ENSIPUG00000011737	arf1	100	95.580
ENSIPUG00000006311	arf1	100	95.028	ENSIPUG00000023431	arf3b	100	95.028
ENSIPUG00000006311	arf1	97	49.143	ENSIPUG00000006168	arl5b	100	50.000
ENSIPUG00000006311	arf1	99	82.222	ENSIPUG00000004159	Arf5	100	82.222
ENSIPUG00000006311	arf1	79	31.944	ENSIPUG00000024669	SAR1B	88	32.174
ENSIPUG00000006311	arf1	87	45.679	ENSIPUG00000019342	Arl4d	81	45.679
ENSIPUG00000006311	arf1	91	48.171	ENSIPUG00000003931	arl2	89	48.171
ENSIPUG00000006311	arf1	99	32.778	ENSIPUG00000000931	arl8ba	97	32.778
ENSIPUG00000006311	arf1	93	44.970	ENSIPUG00000020426	arl11	94	44.970
ENSIPUG00000006311	arf1	100	44.624	ENSIPUG00000019792	arl3l1	99	44.624
ENSIPUG00000006311	arf1	96	47.753	ENSIPUG00000002122	arl4cb	91	47.753
ENSIPUG00000006311	arf1	100	95.028	ENSIPUG00000007829	arf3a	100	95.028
ENSIPUG00000006311	arf1	96	33.333	ENSIPUG00000024487	arfrp1	91	33.333
ENSIPUG00000006311	arf1	88	38.037	ENSIPUG00000024239	ARL6	83	38.037
ENSIPUG00000006311	arf1	96	44.186	ENSIPUG00000008227	arl3	95	44.186
ENSIPUG00000006311	arf1	92	43.931	ENSIPUG00000021618	arl4ab	90	43.931
ENSIPUG00000006311	arf1	96	43.605	ENSIPUG00000015451	arl3	93	45.679
ENSIPUG00000006311	arf1	98	57.062	ENSIPUG00000013834	arl1	95	57.062
ENSIPUG00000006311	arf1	99	82.222	ENSIPUG00000007016	arf4	100	82.222
ENSIPUG00000006311	arf1	97	45.000	ENSIPUG00000024159	arl4a	89	45.000
ENSIPUG00000006311	arf1	59	33.043	ENSIPUG00000010046	sar1b	82	33.043
ENSIPUG00000006311	arf1	86	70.130	ENSIPUG00000020344	-	96	70.130
ENSIPUG00000006311	arf1	92	47.093	ENSIPUG00000006298	-	90	47.093
ENSIPUG00000006311	arf1	100	95.028	ENSIPUG00000000108	Arf2	100	95.028
ENSIPUG00000006311	arf1	98	50.282	ENSIPUG00000021388	arl5a	99	50.282
ENSIPUG00000006311	arf1	98	70.787	ENSIPUG00000006913	-	69	70.787
ENSIPUG00000006311	arf1	99	81.111	ENSIPUG00000004215	arf5	100	81.111
ENSIPUG00000006311	arf1	98	49.432	ENSIPUG00000023232	arl5c	98	49.432
ENSIPUG00000006311	arf1	94	31.176	ENSIPUG00000021761	arl8bb	91	31.176

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000006311	arf1	100	93.370	ENSACIG00000012192	-	100	93.370	Amphilophus_citrinellus
ENSIPUG00000006311	arf1	84	92.105	ENSAOCG00000001275	-	88	92.105	Amphiprion_ocellaris
ENSIPUG00000006311	arf1	100	92.265	ENSAPEG00000016909	-	100	92.265	Amphiprion_percula
ENSIPUG00000006311	arf1	100	93.370	ENSATEG00000003174	-	100	93.370	Anabas_testudineus
ENSIPUG00000006311	arf1	100	93.370	ENSACLG00000004123	-	100	93.370	Astatotilapia_calliptera
ENSIPUG00000006311	arf1	100	98.889	ENSAMXG00000019845	arf1	100	98.889	Astyanax_mexicanus
ENSIPUG00000006311	arf1	100	92.265	ENSCVAG00000013374	-	100	92.265	Cyprinodon_variegatus
ENSIPUG00000006311	arf1	100	98.333	ENSDARG00000009484	arf1	100	98.333	Danio_rerio
ENSIPUG00000006311	arf1	100	97.778	ENSELUG00000022533	arf1	79	97.778	Esox_lucius
ENSIPUG00000006311	arf1	100	91.713	ENSFHEG00000005859	-	100	91.713	Fundulus_heteroclitus
ENSIPUG00000006311	arf1	96	90.751	ENSGMOG00000000429	arf1	95	90.751	Gadus_morhua
ENSIPUG00000006311	arf1	100	92.265	ENSGAFG00000018151	-	100	92.265	Gambusia_affinis
ENSIPUG00000006311	arf1	100	84.444	ENSGACG00000014195	-	97	84.444	Gasterosteus_aculeatus
ENSIPUG00000006311	arf1	100	93.370	ENSHBUG00000002636	-	100	93.370	Haplochromis_burtoni
ENSIPUG00000006311	arf1	100	92.818	ENSKMAG00000018315	-	100	92.818	Kryptolebias_marmoratus
ENSIPUG00000006311	arf1	99	91.061	ENSLBEG00000001998	arf1	100	91.061	Labrus_bergylta
ENSIPUG00000006311	arf1	100	87.293	ENSLBEG00000023263	-	100	87.293	Labrus_bergylta
ENSIPUG00000006311	arf1	100	92.818	ENSMAMG00000001553	-	100	92.818	Mastacembelus_armatus
ENSIPUG00000006311	arf1	100	93.370	ENSMZEG00005022594	-	100	93.370	Maylandia_zebra
ENSIPUG00000006311	arf1	100	93.923	ENSMALG00000004269	-	100	93.923	Monopterus_albus
ENSIPUG00000006311	arf1	100	93.370	ENSNBRG00000016455	-	100	93.370	Neolamprologus_brichardi
ENSIPUG00000006311	arf1	100	93.370	ENSONIG00000001286	-	100	93.370	Oreochromis_niloticus
ENSIPUG00000006311	arf1	100	93.370	ENSORLG00000023270	-	100	93.370	Oryzias_latipes
ENSIPUG00000006311	arf1	100	92.818	ENSORLG00020006712	-	100	92.818	Oryzias_latipes_hni
ENSIPUG00000006311	arf1	100	93.370	ENSORLG00015019836	-	100	93.370	Oryzias_latipes_hsok
ENSIPUG00000006311	arf1	100	93.370	ENSOMEG00000023784	-	100	93.370	Oryzias_melastigma
ENSIPUG00000006311	arf1	100	91.667	ENSPMGG00000014174	arf1	100	91.667	Periophthalmus_magnuspinnatus
ENSIPUG00000006311	arf1	100	93.333	ENSPMAG00000002035	arf1	100	93.333	Petromyzon_marinus
ENSIPUG00000006311	arf1	100	92.265	ENSPFOG00000014787	-	100	92.265	Poecilia_formosa
ENSIPUG00000006311	arf1	100	92.265	ENSPLAG00000001041	-	100	92.265	Poecilia_latipinna
ENSIPUG00000006311	arf1	100	92.265	ENSPMEG00000024077	-	100	92.265	Poecilia_mexicana
ENSIPUG00000006311	arf1	100	92.265	ENSPREG00000009009	-	100	92.265	Poecilia_reticulata
ENSIPUG00000006311	arf1	100	93.370	ENSPNYG00000009472	-	100	93.370	Pundamilia_nyererei
ENSIPUG00000006311	arf1	96	97.674	ENSPNAG00000000098	arf1	95	97.674	Pygocentrus_nattereri
ENSIPUG00000006311	arf1	98	76.836	YDL137W	-	96	76.836	Saccharomyces_cerevisiae
ENSIPUG00000006311	arf1	97	78.286	YDL192W	-	95	78.286	Saccharomyces_cerevisiae
ENSIPUG00000006311	arf1	100	86.111	ENSSMAG00000006125	-	100	86.111	Scophthalmus_maximus
ENSIPUG00000006311	arf1	100	92.818	ENSSDUG00000017356	-	100	92.818	Seriola_dumerili
ENSIPUG00000006311	arf1	100	92.818	ENSSLDG00000008504	-	100	92.818	Seriola_lalandi_dorsalis
ENSIPUG00000006311	arf1	100	93.370	ENSSPAG00000011431	-	100	93.370	Stegastes_partitus
ENSIPUG00000006311	arf1	100	94.475	ENSTRUG00000019870	-	100	94.475	Takifugu_rubripes
ENSIPUG00000006311	arf1	100	93.370	ENSTNIG00000011685	-	100	93.370	Tetraodon_nigroviridis
ENSIPUG00000006311	arf1	100	92.265	ENSXCOG00000016687	-	98	92.265	Xiphophorus_couchianus
ENSIPUG00000006311	arf1	100	92.265	ENSXMAG00000009193	-	100	92.265	Xiphophorus_maculatus