EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000006393 (Gene tree)
Gene ID: 108269047
Gene Symbol: cnot4
Alias: si:dkey-230e6.2
Full Name: CCR4-NOT transcription complex subunit 4
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 21955 bases
Position: chr8:17065315-17087269
Accession: 108269047
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000009368	RRM_1	PF00076.22	1.1e-05	1	1
ENSIPUP00000009350	RRM_1	PF00076.22	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000009759	-	4372	XM_017474556	ENSIPUP00000009350	768 (aa)	XP_017330045	A0A2D0RJE8
ENSIPUT00000009777	-	1851	-	ENSIPUP00000009368	616 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000006393's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006393's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000006393	cnot4	100	71.814	ENSIPUG00000016994	cnot4b	92	93.358

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000006393	cnot4	91	91.481	ENSG00000080802	CNOT4	100	91.481	Homo_sapiens
ENSIPUG00000006393	cnot4	93	94.444	ENSAPOG00000016272	cnot4a	87	94.444	Acanthochromis_polyacanthus
ENSIPUG00000006393	cnot4	91	90.698	ENSAMEG00000012081	CNOT4	84	90.698	Ailuropoda_melanoleuca
ENSIPUG00000006393	cnot4	100	74.381	ENSACIG00000003011	cnot4a	85	94.444	Amphilophus_citrinellus
ENSIPUG00000006393	cnot4	100	87.129	ENSAOCG00000010792	cnot4a	100	86.755	Amphiprion_ocellaris
ENSIPUG00000006393	cnot4	100	87.129	ENSAPEG00000004680	cnot4a	100	86.755	Amphiprion_percula
ENSIPUG00000006393	cnot4	100	86.799	ENSATEG00000017580	cnot4a	100	86.093	Anabas_testudineus
ENSIPUG00000006393	cnot4	100	68.278	ENSAPLG00000016441	CNOT4	100	68.154	Anas_platyrhynchos
ENSIPUG00000006393	cnot4	100	67.738	ENSACAG00000011154	CNOT4	100	67.906	Anolis_carolinensis
ENSIPUG00000006393	cnot4	91	91.481	ENSANAG00000032156	CNOT4	100	91.481	Aotus_nancymaae
ENSIPUG00000006393	cnot4	100	94.444	ENSACLG00000002514	cnot4a	100	86.424	Astatotilapia_calliptera
ENSIPUG00000006393	cnot4	100	90.066	ENSAMXG00000001373	cnot4a	100	90.397	Astyanax_mexicanus
ENSIPUG00000006393	cnot4	100	93.727	ENSAMXG00000011473	cnot4b	100	86.093	Astyanax_mexicanus
ENSIPUG00000006393	cnot4	100	71.364	ENSBTAG00000017919	CNOT4	100	71.818	Bos_taurus
ENSIPUG00000006393	cnot4	91	91.481	ENSCJAG00000012532	CNOT4	100	91.481	Callithrix_jacchus
ENSIPUG00000006393	cnot4	91	91.481	ENSCAFG00000003223	CNOT4	96	91.481	Canis_familiaris
ENSIPUG00000006393	cnot4	91	91.481	ENSCAFG00020000093	CNOT4	100	91.481	Canis_lupus_dingo
ENSIPUG00000006393	cnot4	91	91.481	ENSCHIG00000010955	CNOT4	100	91.481	Capra_hircus
ENSIPUG00000006393	cnot4	91	91.481	ENSTSYG00000000893	CNOT4	96	91.481	Carlito_syrichta
ENSIPUG00000006393	cnot4	100	70.000	ENSCAPG00000006213	CNOT4	100	84.385	Cavia_aperea
ENSIPUG00000006393	cnot4	100	72.121	ENSCPOG00000011526	CNOT4	100	84.718	Cavia_porcellus
ENSIPUG00000006393	cnot4	100	71.515	ENSCCAG00000024414	CNOT4	94	95.633	Cebus_capucinus
ENSIPUG00000006393	cnot4	100	71.429	ENSCATG00000022607	CNOT4	97	84.000	Cercocebus_atys
ENSIPUG00000006393	cnot4	95	84.718	ENSCLAG00000001857	CNOT4	100	84.718	Chinchilla_lanigera
ENSIPUG00000006393	cnot4	91	91.481	ENSCSAG00000009096	CNOT4	100	84.053	Chlorocebus_sabaeus
ENSIPUG00000006393	cnot4	62	95.187	ENSCHOG00000010412	CNOT4	65	95.187	Choloepus_hoffmanni
ENSIPUG00000006393	cnot4	99	91.852	ENSCPBG00000004959	CNOT4	92	91.852	Chrysemys_picta_bellii
ENSIPUG00000006393	cnot4	100	71.429	ENSCANG00000029319	CNOT4	96	91.481	Colobus_angolensis_palliatus
ENSIPUG00000006393	cnot4	91	91.481	ENSCGRG00001014651	Cnot4	100	84.053	Cricetulus_griseus_chok1gshd
ENSIPUG00000006393	cnot4	91	91.481	ENSCGRG00000005727	Cnot4	96	91.481	Cricetulus_griseus_crigri
ENSIPUG00000006393	cnot4	94	87.129	ENSCSEG00000015080	cnot4a	94	86.755	Cynoglossus_semilaevis
ENSIPUG00000006393	cnot4	100	87.129	ENSCVAG00000009399	cnot4a	100	82.866	Cyprinodon_variegatus
ENSIPUG00000006393	cnot4	100	72.304	ENSDARG00000007639	cnot4b	92	93.358	Danio_rerio
ENSIPUG00000006393	cnot4	100	84.211	ENSDARG00000007045	cnot4a	100	84.211	Danio_rerio
ENSIPUG00000006393	cnot4	100	63.151	ENSDNOG00000009409	CNOT4	93	70.962	Dasypus_novemcinctus
ENSIPUG00000006393	cnot4	100	72.121	ENSDORG00000012268	Cnot4	100	84.385	Dipodomys_ordii
ENSIPUG00000006393	cnot4	98	61.010	ENSETEG00000013407	CNOT4	86	69.138	Echinops_telfairi
ENSIPUG00000006393	cnot4	100	71.667	ENSEASG00005014430	CNOT4	100	72.121	Equus_asinus_asinus
ENSIPUG00000006393	cnot4	100	71.667	ENSECAG00000020262	CNOT4	100	72.121	Equus_caballus
ENSIPUG00000006393	cnot4	94	92.045	ENSELUG00000011540	cnot4b	83	92.045	Esox_lucius
ENSIPUG00000006393	cnot4	99	87.171	ENSELUG00000008742	cnot4a	92	93.727	Esox_lucius
ENSIPUG00000006393	cnot4	91	91.481	ENSFCAG00000011904	CNOT4	100	91.481	Felis_catus
ENSIPUG00000006393	cnot4	100	68.401	ENSFALG00000011194	CNOT4	100	68.401	Ficedula_albicollis
ENSIPUG00000006393	cnot4	91	91.481	ENSFDAG00000013525	CNOT4	100	84.053	Fukomys_damarensis
ENSIPUG00000006393	cnot4	100	87.789	ENSFHEG00000006608	cnot4a	92	94.815	Fundulus_heteroclitus
ENSIPUG00000006393	cnot4	96	69.759	ENSGMOG00000001329	cnot4a	99	69.250	Gadus_morhua
ENSIPUG00000006393	cnot4	100	71.429	ENSGALG00000011682	CNOT4	100	68.364	Gallus_gallus
ENSIPUG00000006393	cnot4	100	87.459	ENSGACG00000004276	cnot4a	100	86.424	Gasterosteus_aculeatus
ENSIPUG00000006393	cnot4	99	91.852	ENSGAGG00000017331	CNOT4	92	91.852	Gopherus_agassizii
ENSIPUG00000006393	cnot4	84	90.278	ENSGGOG00000000142	CNOT4	99	90.278	Gorilla_gorilla
ENSIPUG00000006393	cnot4	100	94.444	ENSHBUG00000000027	cnot4a	100	86.424	Haplochromis_burtoni
ENSIPUG00000006393	cnot4	91	91.481	ENSHGLG00000011533	CNOT4	100	91.481	Heterocephalus_glaber_female
ENSIPUG00000006393	cnot4	83	73.285	ENSHGLG00100013058	CNOT4	94	73.285	Heterocephalus_glaber_male
ENSIPUG00000006393	cnot4	93	88.772	ENSHCOG00000015815	cnot4a	100	85.099	Hippocampus_comes
ENSIPUG00000006393	cnot4	91	91.481	ENSSTOG00000007717	CNOT4	100	91.481	Ictidomys_tridecemlineatus
ENSIPUG00000006393	cnot4	91	91.481	ENSJJAG00000016618	Cnot4	100	91.481	Jaculus_jaculus
ENSIPUG00000006393	cnot4	70	84.321	ENSJJAG00000019991	-	95	84.321	Jaculus_jaculus
ENSIPUG00000006393	cnot4	93	90.877	ENSKMAG00000004581	cnot4a	100	87.417	Kryptolebias_marmoratus
ENSIPUG00000006393	cnot4	100	87.129	ENSLBEG00000009999	cnot4a	85	94.074	Labrus_bergylta
ENSIPUG00000006393	cnot4	100	69.021	ENSLACG00000002647	CNOT4	99	69.021	Latimeria_chalumnae
ENSIPUG00000006393	cnot4	100	93.750	ENSLOCG00000016126	cnot4a	92	93.750	Lepisosteus_oculatus
ENSIPUG00000006393	cnot4	100	63.374	ENSLAFG00000000709	CNOT4	93	71.256	Loxodonta_africana
ENSIPUG00000006393	cnot4	91	91.481	ENSMFAG00000046349	CNOT4	96	91.481	Macaca_fascicularis
ENSIPUG00000006393	cnot4	100	71.429	ENSMMUG00000016181	CNOT4	97	84.000	Macaca_mulatta
ENSIPUG00000006393	cnot4	91	91.481	ENSMNEG00000042164	CNOT4	100	91.481	Macaca_nemestrina
ENSIPUG00000006393	cnot4	100	71.429	ENSMLEG00000032709	CNOT4	96	91.481	Mandrillus_leucophaeus
ENSIPUG00000006393	cnot4	100	94.444	ENSMAMG00000023194	cnot4a	99	94.465	Mastacembelus_armatus
ENSIPUG00000006393	cnot4	100	94.444	ENSMZEG00005007312	cnot4a	100	81.126	Maylandia_zebra
ENSIPUG00000006393	cnot4	100	68.154	ENSMGAG00000011788	CNOT4	100	68.154	Meleagris_gallopavo
ENSIPUG00000006393	cnot4	91	91.481	ENSMAUG00000020415	Cnot4	100	91.481	Mesocricetus_auratus
ENSIPUG00000006393	cnot4	100	71.667	ENSMICG00000001667	CNOT4	100	83.991	Microcebus_murinus
ENSIPUG00000006393	cnot4	91	91.481	ENSMOCG00000020955	Cnot4	100	84.053	Microtus_ochrogaster
ENSIPUG00000006393	cnot4	95	77.614	ENSMMOG00000014565	cnot4a	99	85.762	Mola_mola
ENSIPUG00000006393	cnot4	100	63.599	ENSMODG00000014068	CNOT4	100	91.481	Monodelphis_domestica
ENSIPUG00000006393	cnot4	92	93.704	ENSMALG00000011662	cnot4a	74	93.704	Monopterus_albus
ENSIPUG00000006393	cnot4	91	91.481	MGP_CAROLIEiJ_G0028217	Cnot4	100	91.481	Mus_caroli
ENSIPUG00000006393	cnot4	91	91.481	ENSMUSG00000038784	Cnot4	100	91.481	Mus_musculus
ENSIPUG00000006393	cnot4	91	91.481	MGP_PahariEiJ_G0021974	Cnot4	100	91.481	Mus_pahari
ENSIPUG00000006393	cnot4	91	91.481	MGP_SPRETEiJ_G0029216	Cnot4	100	91.481	Mus_spretus
ENSIPUG00000006393	cnot4	91	91.481	ENSMPUG00000004089	CNOT4	100	84.053	Mustela_putorius_furo
ENSIPUG00000006393	cnot4	100	71.818	ENSMLUG00000008260	CNOT4	100	71.818	Myotis_lucifugus
ENSIPUG00000006393	cnot4	100	71.581	ENSNGAG00000015030	Cnot4	100	91.481	Nannospalax_galili
ENSIPUG00000006393	cnot4	93	84.912	ENSNBRG00000021144	cnot4a	100	81.457	Neolamprologus_brichardi
ENSIPUG00000006393	cnot4	100	71.277	ENSNLEG00000013352	CNOT4	97	84.000	Nomascus_leucogenys
ENSIPUG00000006393	cnot4	83	69.264	ENSOPRG00000001023	CNOT4	80	69.264	Ochotona_princeps
ENSIPUG00000006393	cnot4	100	72.121	ENSODEG00000012975	CNOT4	100	84.718	Octodon_degus
ENSIPUG00000006393	cnot4	100	94.444	ENSONIG00000008656	cnot4a	85	94.444	Oreochromis_niloticus
ENSIPUG00000006393	cnot4	91	91.481	ENSOANG00000005006	CNOT4	93	72.414	Ornithorhynchus_anatinus
ENSIPUG00000006393	cnot4	91	91.481	ENSOCUG00000013448	CNOT4	100	91.481	Oryctolagus_cuniculus
ENSIPUG00000006393	cnot4	92	90.877	ENSORLG00000003727	cnot4a	100	87.086	Oryzias_latipes
ENSIPUG00000006393	cnot4	93	91.228	ENSORLG00020015684	cnot4a	100	87.417	Oryzias_latipes_hni
ENSIPUG00000006393	cnot4	92	91.228	ENSORLG00015008470	cnot4a	100	87.417	Oryzias_latipes_hsok
ENSIPUG00000006393	cnot4	92	90.877	ENSOMEG00000011084	cnot4a	100	87.086	Oryzias_melastigma
ENSIPUG00000006393	cnot4	100	63.014	ENSOGAG00000015499	CNOT4	93	71.012	Otolemur_garnettii
ENSIPUG00000006393	cnot4	100	71.012	ENSOARG00000008803	CNOT4	93	71.012	Ovis_aries
ENSIPUG00000006393	cnot4	100	71.277	ENSPPAG00000041937	CNOT4	97	84.235	Pan_paniscus
ENSIPUG00000006393	cnot4	100	71.515	ENSPPRG00000023940	CNOT4	100	71.970	Panthera_pardus
ENSIPUG00000006393	cnot4	91	91.481	ENSPTIG00000016601	CNOT4	100	91.481	Panthera_tigris_altaica
ENSIPUG00000006393	cnot4	100	71.429	ENSPTRG00000019727	CNOT4	97	84.000	Pan_troglodytes
ENSIPUG00000006393	cnot4	100	71.429	ENSPANG00000017724	CNOT4	97	84.000	Papio_anubis
ENSIPUG00000006393	cnot4	100	90.074	ENSPKIG00000018137	cnot4a	100	90.370	Paramormyrops_kingsleyae
ENSIPUG00000006393	cnot4	100	67.778	ENSPSIG00000011256	CNOT4	100	67.778	Pelodiscus_sinensis
ENSIPUG00000006393	cnot4	100	77.607	ENSPMGG00000005671	cnot4a	100	86.093	Periophthalmus_magnuspinnatus
ENSIPUG00000006393	cnot4	91	91.481	ENSPEMG00000021566	Cnot4	100	91.481	Peromyscus_maniculatus_bairdii
ENSIPUG00000006393	cnot4	100	72.298	ENSPCIG00000029622	CNOT4	96	84.053	Phascolarctos_cinereus
ENSIPUG00000006393	cnot4	100	87.459	ENSPFOG00000002228	cnot4a	92	94.444	Poecilia_formosa
ENSIPUG00000006393	cnot4	100	87.459	ENSPLAG00000001780	cnot4a	100	86.755	Poecilia_latipinna
ENSIPUG00000006393	cnot4	100	87.129	ENSPMEG00000006852	cnot4a	100	86.755	Poecilia_mexicana
ENSIPUG00000006393	cnot4	100	87.459	ENSPREG00000008171	cnot4a	99	92.989	Poecilia_reticulata
ENSIPUG00000006393	cnot4	91	91.481	ENSPPYG00000018026	CNOT4	100	84.053	Pongo_abelii
ENSIPUG00000006393	cnot4	100	71.515	ENSPCOG00000019907	CNOT4	96	91.481	Propithecus_coquereli
ENSIPUG00000006393	cnot4	93	63.120	ENSPVAG00000004905	CNOT4	83	70.840	Pteropus_vampyrus
ENSIPUG00000006393	cnot4	100	94.444	ENSPNYG00000004276	cnot4a	100	81.126	Pundamilia_nyererei
ENSIPUG00000006393	cnot4	100	94.465	ENSPNAG00000008679	cnot4b	92	94.465	Pygocentrus_nattereri
ENSIPUG00000006393	cnot4	100	89.735	ENSPNAG00000020433	cnot4a	100	89.735	Pygocentrus_nattereri
ENSIPUG00000006393	cnot4	91	91.481	ENSRNOG00000010795	Cnot4	100	91.481	Rattus_norvegicus
ENSIPUG00000006393	cnot4	100	71.429	ENSRBIG00000043977	CNOT4	97	84.000	Rhinopithecus_bieti
ENSIPUG00000006393	cnot4	95	84.385	ENSSBOG00000020808	CNOT4	100	84.385	Saimiri_boliviensis_boliviensis
ENSIPUG00000006393	cnot4	100	64.148	ENSSHAG00000013639	CNOT4	100	84.053	Sarcophilus_harrisii
ENSIPUG00000006393	cnot4	100	86.207	ENSSFOG00015002019	cnot4a	100	90.741	Scleropages_formosus
ENSIPUG00000006393	cnot4	100	93.382	ENSSFOG00015017285	CNOT4	100	86.093	Scleropages_formosus
ENSIPUG00000006393	cnot4	100	87.129	ENSSMAG00000008614	cnot4a	99	94.465	Scophthalmus_maximus
ENSIPUG00000006393	cnot4	80	93.657	ENSSDUG00000018585	cnot4b	99	93.657	Seriola_dumerili
ENSIPUG00000006393	cnot4	100	94.444	ENSSDUG00000022635	cnot4a	100	86.424	Seriola_dumerili
ENSIPUG00000006393	cnot4	100	63.217	ENSSLDG00000014347	cnot4b	100	63.217	Seriola_lalandi_dorsalis
ENSIPUG00000006393	cnot4	100	94.444	ENSSLDG00000015770	cnot4a	99	94.465	Seriola_lalandi_dorsalis
ENSIPUG00000006393	cnot4	100	71.970	ENSSPUG00000004677	CNOT4	100	71.970	Sphenodon_punctatus
ENSIPUG00000006393	cnot4	100	94.444	ENSSPAG00000012329	cnot4a	92	94.444	Stegastes_partitus
ENSIPUG00000006393	cnot4	100	71.515	ENSSSCG00000021354	CNOT4	99	91.481	Sus_scrofa
ENSIPUG00000006393	cnot4	100	68.401	ENSTGUG00000009161	CNOT4	100	68.401	Taeniopygia_guttata
ENSIPUG00000006393	cnot4	100	87.459	ENSTRUG00000016861	cnot4a	100	86.424	Takifugu_rubripes
ENSIPUG00000006393	cnot4	91	87.454	ENSTNIG00000016000	cnot4a	99	87.454	Tetraodon_nigroviridis
ENSIPUG00000006393	cnot4	88	68.096	ENSTBEG00000002202	CNOT4	81	67.581	Tupaia_belangeri
ENSIPUG00000006393	cnot4	93	70.890	ENSTTRG00000005122	CNOT4	84	70.890	Tursiops_truncatus
ENSIPUG00000006393	cnot4	100	71.515	ENSUAMG00000026759	CNOT4	100	71.970	Ursus_americanus
ENSIPUG00000006393	cnot4	99	71.756	ENSUMAG00000015351	CNOT4	94	73.381	Ursus_maritimus
ENSIPUG00000006393	cnot4	91	91.481	ENSVVUG00000006200	CNOT4	100	91.481	Vulpes_vulpes
ENSIPUG00000006393	cnot4	100	91.852	ENSXETG00000010594	cnot4	89	91.852	Xenopus_tropicalis
ENSIPUG00000006393	cnot4	79	90.526	ENSXCOG00000020824	cnot4a	98	90.526	Xiphophorus_couchianus
ENSIPUG00000006393	cnot4	100	94.444	ENSXMAG00000016984	cnot4a	100	86.755	Xiphophorus_maculatus