EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000006536 (Gene tree)
Gene ID: 108280871
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 12611 bases
Position: chr20:5802783-5815393
Accession: 108280871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000009558	SBDS	PF01172.18	9.4e-34	1	1
ENSIPUP00000009558	SBDS_C	PF09377.10	2.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000009980	-	5508	XM_017496349	ENSIPUP00000009558	250 (aa)	XP_017351838	W5ULA5

Gene Model

Click here to download ENSIPUG00000006536's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000006536	sbds	100	85.200	ENSG00000126524	SBDS	100	85.200	Homo_sapiens
ENSIPUG00000006536	sbds	99	89.960	ENSAPOG00000014285	sbds	100	89.960	Acanthochromis_polyacanthus
ENSIPUG00000006536	sbds	100	85.200	ENSAMEG00000018167	SBDS	100	85.200	Ailuropoda_melanoleuca
ENSIPUG00000006536	sbds	99	88.095	ENSACIG00000007308	sbds	100	88.095	Amphilophus_citrinellus
ENSIPUG00000006536	sbds	99	90.361	ENSAOCG00000016770	sbds	100	90.361	Amphiprion_ocellaris
ENSIPUG00000006536	sbds	99	90.361	ENSAPEG00000015897	sbds	100	90.361	Amphiprion_percula
ENSIPUG00000006536	sbds	99	90.361	ENSATEG00000006901	sbds	100	90.361	Anabas_testudineus
ENSIPUG00000006536	sbds	92	80.087	ENSANAG00000024342	-	97	80.087	Aotus_nancymaae
ENSIPUG00000006536	sbds	83	84.058	ENSANAG00000037501	-	100	84.058	Aotus_nancymaae
ENSIPUG00000006536	sbds	99	89.960	ENSACLG00000018750	sbds	100	89.960	Astatotilapia_calliptera
ENSIPUG00000006536	sbds	100	92.000	ENSAMXG00000005361	sbds	100	92.000	Astyanax_mexicanus
ENSIPUG00000006536	sbds	100	85.200	ENSBTAG00000004051	SBDS	100	85.200	Bos_taurus
ENSIPUG00000006536	sbds	98	56.911	WBGene00021063	sbds-1	97	56.911	Caenorhabditis_elegans
ENSIPUG00000006536	sbds	100	85.200	ENSCJAG00000041007	SBDS	100	85.200	Callithrix_jacchus
ENSIPUG00000006536	sbds	100	83.333	ENSCAFG00000010797	SBDS	100	83.333	Canis_familiaris
ENSIPUG00000006536	sbds	100	85.200	ENSCAFG00020005357	SBDS	100	85.200	Canis_lupus_dingo
ENSIPUG00000006536	sbds	100	85.200	ENSCHIG00000026854	SBDS	100	85.200	Capra_hircus
ENSIPUG00000006536	sbds	100	85.200	ENSTSYG00000033822	SBDS	100	85.200	Carlito_syrichta
ENSIPUG00000006536	sbds	66	85.366	ENSCAPG00000006634	SBDS	100	85.366	Cavia_aperea
ENSIPUG00000006536	sbds	100	86.000	ENSCPOG00000036143	SBDS	100	86.000	Cavia_porcellus
ENSIPUG00000006536	sbds	100	85.200	ENSCCAG00000020671	SBDS	100	85.200	Cebus_capucinus
ENSIPUG00000006536	sbds	100	85.200	ENSCATG00000039026	SBDS	100	85.200	Cercocebus_atys
ENSIPUG00000006536	sbds	99	61.694	ENSCLAG00000002113	-	99	61.694	Chinchilla_lanigera
ENSIPUG00000006536	sbds	100	86.400	ENSCLAG00000005721	-	100	86.400	Chinchilla_lanigera
ENSIPUG00000006536	sbds	100	85.200	ENSCSAG00000018275	SBDS	100	85.200	Chlorocebus_sabaeus
ENSIPUG00000006536	sbds	100	80.800	ENSCHOG00000003795	SBDS	100	80.800	Choloepus_hoffmanni
ENSIPUG00000006536	sbds	100	88.000	ENSCPBG00000014893	SBDS	100	88.000	Chrysemys_picta_bellii
ENSIPUG00000006536	sbds	99	69.200	ENSCSAVG00000011811	-	100	69.200	Ciona_savignyi
ENSIPUG00000006536	sbds	100	84.800	ENSCANG00000032368	SBDS	100	84.800	Colobus_angolensis_palliatus
ENSIPUG00000006536	sbds	66	85.366	ENSCGRG00001019886	Sbds	100	85.366	Cricetulus_griseus_chok1gshd
ENSIPUG00000006536	sbds	83	85.024	ENSCGRG00000009211	Sbds	100	85.024	Cricetulus_griseus_crigri
ENSIPUG00000006536	sbds	99	88.353	ENSCSEG00000005798	sbds	100	88.353	Cynoglossus_semilaevis
ENSIPUG00000006536	sbds	99	86.747	ENSCVAG00000001053	sbds	100	86.747	Cyprinodon_variegatus
ENSIPUG00000006536	sbds	100	92.400	ENSDARG00000027803	sbds	100	92.400	Danio_rerio
ENSIPUG00000006536	sbds	100	85.200	ENSDNOG00000041174	SBDS	100	85.200	Dasypus_novemcinctus
ENSIPUG00000006536	sbds	100	84.800	ENSDORG00000026218	Sbds	100	84.800	Dipodomys_ordii
ENSIPUG00000006536	sbds	90	61.404	FBgn0035714	CG8549	99	61.446	Drosophila_melanogaster
ENSIPUG00000006536	sbds	93	58.798	ENSEBUG00000015780	sbds	100	58.798	Eptatretus_burgeri
ENSIPUG00000006536	sbds	100	85.200	ENSEASG00005008821	SBDS	100	85.200	Equus_asinus_asinus
ENSIPUG00000006536	sbds	100	85.200	ENSECAG00000008202	SBDS	100	85.200	Equus_caballus
ENSIPUG00000006536	sbds	83	65.865	ENSEEUG00000004768	SBDS	100	65.865	Erinaceus_europaeus
ENSIPUG00000006536	sbds	100	89.200	ENSELUG00000008382	sbds	100	89.200	Esox_lucius
ENSIPUG00000006536	sbds	100	84.800	ENSFCAG00000022142	SBDS	100	84.800	Felis_catus
ENSIPUG00000006536	sbds	100	87.600	ENSFALG00000013808	SBDS	100	87.600	Ficedula_albicollis
ENSIPUG00000006536	sbds	100	86.000	ENSFDAG00000018947	-	100	86.000	Fukomys_damarensis
ENSIPUG00000006536	sbds	99	83.133	ENSFHEG00000000708	sbds	100	83.133	Fundulus_heteroclitus
ENSIPUG00000006536	sbds	100	88.800	ENSGMOG00000018356	sbds	99	88.800	Gadus_morhua
ENSIPUG00000006536	sbds	100	85.200	ENSGALG00000027989	SBDS	100	85.200	Gallus_gallus
ENSIPUG00000006536	sbds	92	83.478	ENSGAFG00000014204	sbds	100	83.478	Gambusia_affinis
ENSIPUG00000006536	sbds	99	88.353	ENSGACG00000012697	sbds	100	88.353	Gasterosteus_aculeatus
ENSIPUG00000006536	sbds	86	88.318	ENSGAGG00000022402	SBDS	100	88.318	Gopherus_agassizii
ENSIPUG00000006536	sbds	96	67.220	ENSGGOG00000040023	-	92	67.220	Gorilla_gorilla
ENSIPUG00000006536	sbds	99	89.960	ENSHBUG00000002660	sbds	100	89.960	Haplochromis_burtoni
ENSIPUG00000006536	sbds	100	84.400	ENSHGLG00000009671	SBDS	100	84.400	Heterocephalus_glaber_female
ENSIPUG00000006536	sbds	100	84.400	ENSHGLG00100011332	SBDS	100	84.400	Heterocephalus_glaber_male
ENSIPUG00000006536	sbds	99	85.542	ENSHCOG00000018606	sbds	100	85.542	Hippocampus_comes
ENSIPUG00000006536	sbds	100	82.400	ENSJJAG00000012033	-	100	82.400	Jaculus_jaculus
ENSIPUG00000006536	sbds	100	62.451	ENSJJAG00000003934	-	100	62.451	Jaculus_jaculus
ENSIPUG00000006536	sbds	99	88.353	ENSKMAG00000018542	sbds	100	88.353	Kryptolebias_marmoratus
ENSIPUG00000006536	sbds	99	86.747	ENSLBEG00000016687	sbds	100	86.747	Labrus_bergylta
ENSIPUG00000006536	sbds	100	74.803	ENSLACG00000018916	SBDS	100	74.803	Latimeria_chalumnae
ENSIPUG00000006536	sbds	100	92.800	ENSLOCG00000004073	sbds	100	92.800	Lepisosteus_oculatus
ENSIPUG00000006536	sbds	100	84.400	ENSLAFG00000008763	SBDS	100	84.400	Loxodonta_africana
ENSIPUG00000006536	sbds	100	85.200	ENSMFAG00000032620	SBDS	100	85.200	Macaca_fascicularis
ENSIPUG00000006536	sbds	100	85.200	ENSMMUG00000045653	SBDS	100	85.200	Macaca_mulatta
ENSIPUG00000006536	sbds	100	85.200	ENSMNEG00000031523	SBDS	100	85.200	Macaca_nemestrina
ENSIPUG00000006536	sbds	100	66.929	ENSMLEG00000036826	SBDS	100	66.929	Mandrillus_leucophaeus
ENSIPUG00000006536	sbds	99	89.157	ENSMAMG00000016062	sbds	100	89.157	Mastacembelus_armatus
ENSIPUG00000006536	sbds	99	89.960	ENSMZEG00005024385	sbds	100	89.960	Maylandia_zebra
ENSIPUG00000006536	sbds	100	85.200	ENSMGAG00000002119	SBDS	100	85.200	Meleagris_gallopavo
ENSIPUG00000006536	sbds	99	69.076	ENSMAUG00000022214	-	100	69.076	Mesocricetus_auratus
ENSIPUG00000006536	sbds	100	85.200	ENSMICG00000014366	SBDS	100	85.200	Microcebus_murinus
ENSIPUG00000006536	sbds	100	86.400	ENSMOCG00000011739	Sbds	100	86.400	Microtus_ochrogaster
ENSIPUG00000006536	sbds	99	81.200	ENSMMOG00000005061	sbds	100	81.200	Mola_mola
ENSIPUG00000006536	sbds	100	86.400	ENSMODG00000006644	SBDS	100	86.400	Monodelphis_domestica
ENSIPUG00000006536	sbds	99	85.944	ENSMALG00000010219	sbds	100	85.944	Monopterus_albus
ENSIPUG00000006536	sbds	100	86.400	MGP_CAROLIEiJ_G0027800	Sbds	98	95.238	Mus_caroli
ENSIPUG00000006536	sbds	100	86.000	ENSMUSG00000025337	Sbds	98	95.238	Mus_musculus
ENSIPUG00000006536	sbds	100	86.400	MGP_PahariEiJ_G0024384	Sbds	98	95.238	Mus_pahari
ENSIPUG00000006536	sbds	100	86.000	MGP_SPRETEiJ_G0028798	Sbds	98	95.238	Mus_spretus
ENSIPUG00000006536	sbds	67	83.333	ENSMPUG00000016192	SBDS	97	83.333	Mustela_putorius_furo
ENSIPUG00000006536	sbds	73	82.418	ENSMLUG00000013575	SBDS	100	82.418	Myotis_lucifugus
ENSIPUG00000006536	sbds	100	85.600	ENSNGAG00000012093	Sbds	100	85.600	Nannospalax_galili
ENSIPUG00000006536	sbds	99	89.960	ENSNBRG00000017027	sbds	100	89.960	Neolamprologus_brichardi
ENSIPUG00000006536	sbds	100	85.200	ENSNLEG00000013288	SBDS	100	85.200	Nomascus_leucogenys
ENSIPUG00000006536	sbds	100	85.600	ENSOPRG00000008721	SBDS	100	85.600	Ochotona_princeps
ENSIPUG00000006536	sbds	99	65.462	ENSODEG00000000137	-	85	68.400	Octodon_degus
ENSIPUG00000006536	sbds	99	66.667	ENSODEG00000001116	-	99	66.667	Octodon_degus
ENSIPUG00000006536	sbds	100	76.400	ENSODEG00000019253	-	84	76.400	Octodon_degus
ENSIPUG00000006536	sbds	99	89.960	ENSONIG00000005874	sbds	100	89.960	Oreochromis_niloticus
ENSIPUG00000006536	sbds	83	82.609	ENSOANG00000007674	-	100	82.609	Ornithorhynchus_anatinus
ENSIPUG00000006536	sbds	100	86.800	ENSOCUG00000003170	SBDS	100	86.800	Oryctolagus_cuniculus
ENSIPUG00000006536	sbds	99	86.747	ENSORLG00000023489	sbds	100	86.747	Oryzias_latipes
ENSIPUG00000006536	sbds	99	85.944	ENSORLG00020019282	sbds	100	85.944	Oryzias_latipes_hni
ENSIPUG00000006536	sbds	99	85.944	ENSORLG00015008005	sbds	100	85.944	Oryzias_latipes_hsok
ENSIPUG00000006536	sbds	99	85.944	ENSOMEG00000022747	sbds	100	85.944	Oryzias_melastigma
ENSIPUG00000006536	sbds	100	85.600	ENSOGAG00000009011	-	100	85.600	Otolemur_garnettii
ENSIPUG00000006536	sbds	100	70.800	ENSOGAG00000015036	-	100	70.800	Otolemur_garnettii
ENSIPUG00000006536	sbds	100	85.200	ENSOARG00000010609	SBDS	100	85.200	Ovis_aries
ENSIPUG00000006536	sbds	100	84.400	ENSPPAG00000043889	-	100	84.400	Pan_paniscus
ENSIPUG00000006536	sbds	100	84.800	ENSPPRG00000002307	SBDS	100	84.800	Panthera_pardus
ENSIPUG00000006536	sbds	100	84.800	ENSPTIG00000021308	SBDS	100	84.800	Panthera_tigris_altaica
ENSIPUG00000006536	sbds	100	72.400	ENSPTRG00000047744	-	100	72.400	Pan_troglodytes
ENSIPUG00000006536	sbds	100	85.200	ENSPTRG00000019254	SBDS	100	85.200	Pan_troglodytes
ENSIPUG00000006536	sbds	100	72.400	ENSPTRG00000050835	-	100	72.400	Pan_troglodytes
ENSIPUG00000006536	sbds	87	82.488	ENSPTRG00000048174	-	96	82.488	Pan_troglodytes
ENSIPUG00000006536	sbds	100	84.800	ENSPANG00000004078	SBDS	100	84.800	Papio_anubis
ENSIPUG00000006536	sbds	100	92.800	ENSPKIG00000006489	sbds	100	92.800	Paramormyrops_kingsleyae
ENSIPUG00000006536	sbds	83	87.019	ENSPSIG00000014603	SBDS	100	87.019	Pelodiscus_sinensis
ENSIPUG00000006536	sbds	99	88.755	ENSPMGG00000004246	sbds	100	88.755	Periophthalmus_magnuspinnatus
ENSIPUG00000006536	sbds	100	85.600	ENSPEMG00000008728	Sbds	100	85.600	Peromyscus_maniculatus_bairdii
ENSIPUG00000006536	sbds	100	87.200	ENSPCIG00000029718	SBDS	100	87.200	Phascolarctos_cinereus
ENSIPUG00000006536	sbds	99	85.542	ENSPFOG00000015837	sbds	100	85.542	Poecilia_formosa
ENSIPUG00000006536	sbds	99	85.944	ENSPLAG00000003641	sbds	100	85.944	Poecilia_latipinna
ENSIPUG00000006536	sbds	99	85.542	ENSPMEG00000019483	sbds	100	85.542	Poecilia_mexicana
ENSIPUG00000006536	sbds	99	85.542	ENSPREG00000018758	sbds	100	85.542	Poecilia_reticulata
ENSIPUG00000006536	sbds	100	85.200	ENSPPYG00000017513	SBDS	100	85.200	Pongo_abelii
ENSIPUG00000006536	sbds	100	84.800	ENSPCOG00000021098	SBDS	100	84.800	Propithecus_coquereli
ENSIPUG00000006536	sbds	100	85.600	ENSPVAG00000009369	SBDS	100	85.600	Pteropus_vampyrus
ENSIPUG00000006536	sbds	99	89.558	ENSPNYG00000022403	sbds	100	89.558	Pundamilia_nyererei
ENSIPUG00000006536	sbds	100	93.600	ENSPNAG00000001120	sbds	100	93.600	Pygocentrus_nattereri
ENSIPUG00000006536	sbds	100	86.000	ENSRNOG00000000888	Sbds	100	86.000	Rattus_norvegicus
ENSIPUG00000006536	sbds	100	85.200	ENSRBIG00000035557	SBDS	100	85.200	Rhinopithecus_bieti
ENSIPUG00000006536	sbds	100	68.800	ENSRROG00000041986	-	100	66.800	Rhinopithecus_roxellana
ENSIPUG00000006536	sbds	100	85.200	ENSRROG00000040842	-	100	85.200	Rhinopithecus_roxellana
ENSIPUG00000006536	sbds	96	43.089	YLR022C	-	96	41.463	Saccharomyces_cerevisiae
ENSIPUG00000006536	sbds	93	83.190	ENSSBOG00000022460	SBDS	100	83.190	Saimiri_boliviensis_boliviensis
ENSIPUG00000006536	sbds	100	75.600	ENSSHAG00000010263	SBDS	100	75.600	Sarcophilus_harrisii
ENSIPUG00000006536	sbds	100	93.600	ENSSFOG00015001108	sbds	100	93.600	Scleropages_formosus
ENSIPUG00000006536	sbds	99	88.353	ENSSMAG00000020506	sbds	100	88.353	Scophthalmus_maximus
ENSIPUG00000006536	sbds	99	88.755	ENSSDUG00000001528	sbds	100	88.755	Seriola_dumerili
ENSIPUG00000006536	sbds	99	88.353	ENSSLDG00000003659	sbds	100	88.353	Seriola_lalandi_dorsalis
ENSIPUG00000006536	sbds	61	88.235	ENSSARG00000013132	-	100	88.235	Sorex_araneus
ENSIPUG00000006536	sbds	73	88.372	ENSSARG00000001899	-	73	88.372	Sorex_araneus
ENSIPUG00000006536	sbds	100	85.200	ENSSPUG00000002699	SBDS	100	85.200	Sphenodon_punctatus
ENSIPUG00000006536	sbds	99	89.558	ENSSPAG00000016419	sbds	100	82.800	Stegastes_partitus
ENSIPUG00000006536	sbds	100	85.200	ENSSSCG00000007732	SBDS	100	85.200	Sus_scrofa
ENSIPUG00000006536	sbds	66	87.273	ENSTGUG00000003426	SBDS	99	87.273	Taeniopygia_guttata
ENSIPUG00000006536	sbds	99	89.157	ENSTRUG00000021443	sbds	100	89.157	Takifugu_rubripes
ENSIPUG00000006536	sbds	99	88.353	ENSTNIG00000019000	sbds	100	88.353	Tetraodon_nigroviridis
ENSIPUG00000006536	sbds	83	72.596	ENSTBEG00000001178	SBDS	100	72.596	Tupaia_belangeri
ENSIPUG00000006536	sbds	100	66.800	ENSTTRG00000003921	SBDS	100	66.800	Tursiops_truncatus
ENSIPUG00000006536	sbds	100	85.200	ENSUAMG00000001326	SBDS	100	85.200	Ursus_americanus
ENSIPUG00000006536	sbds	100	85.200	ENSUMAG00000015353	SBDS	100	85.200	Ursus_maritimus
ENSIPUG00000006536	sbds	100	85.200	ENSVVUG00000016478	SBDS	100	85.200	Vulpes_vulpes
ENSIPUG00000006536	sbds	100	88.000	ENSXETG00000010093	sbds	100	88.000	Xenopus_tropicalis
ENSIPUG00000006536	sbds	99	76.707	ENSXCOG00000010639	sbds	100	76.707	Xiphophorus_couchianus
ENSIPUG00000006536	sbds	99	86.345	ENSXMAG00000006065	sbds	100	86.345	Xiphophorus_maculatus