EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000006624 (Gene tree)
Gene ID: 108256630
Gene Symbol: Smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 15502 bases
Position: chr23:18483835-18499336
Accession: 108256630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000009907	EST1	PF10374.9	4.4e-24	1	1
ENSIPUP00000009828	EST1	PF10374.9	4.4e-24	1	1
ENSIPUP00000009828	EST1_DNA_bind	PF10373.9	2.4e-42	1	1
ENSIPUP00000009907	EST1_DNA_bind	PF10373.9	3.5e-31	1	1
ENSIPUP00000009907	PIN_4	PF13638.6	2.6e-06	1	1
ENSIPUP00000009828	PIN_4	PF13638.6	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000010261	-	5759	XM_017453691	ENSIPUP00000009828	1095 (aa)	XP_017309180	W5U5Y4
ENSIPUT00000010343	-	3270	-	ENSIPUP00000009907	1089 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000006624's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006624's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000006624	Smg5	99	62.078	ENSG00000198952	SMG5	99	60.398	Homo_sapiens
ENSIPUG00000006624	Smg5	100	76.964	ENSAPOG00000019690	smg5	100	77.768	Acanthochromis_polyacanthus
ENSIPUG00000006624	Smg5	98	61.439	ENSAMEG00000014458	SMG5	100	59.724	Ailuropoda_melanoleuca
ENSIPUG00000006624	Smg5	100	76.833	ENSACIG00000001353	smg5	99	75.518	Amphilophus_citrinellus
ENSIPUG00000006624	Smg5	100	78.004	ENSAOCG00000019483	smg5	100	78.042	Amphiprion_ocellaris
ENSIPUG00000006624	Smg5	100	78.004	ENSAPEG00000022949	smg5	100	78.042	Amphiprion_percula
ENSIPUG00000006624	Smg5	100	75.993	ENSATEG00000005348	smg5	100	76.930	Anabas_testudineus
ENSIPUG00000006624	Smg5	98	64.088	ENSAPLG00000010263	SMG5	100	62.915	Anas_platyrhynchos
ENSIPUG00000006624	Smg5	99	61.987	ENSANAG00000032899	SMG5	51	59.074	Aotus_nancymaae
ENSIPUG00000006624	Smg5	100	77.277	ENSACLG00000009311	smg5	100	77.329	Astatotilapia_calliptera
ENSIPUG00000006624	Smg5	100	85.727	ENSAMXG00000024616	smg5	100	85.870	Astyanax_mexicanus
ENSIPUG00000006624	Smg5	92	51.699	ENSBTAG00000021747	-	85	51.699	Bos_taurus
ENSIPUG00000006624	Smg5	99	62.094	ENSBTAG00000009435	SMG5	99	61.754	Bos_taurus
ENSIPUG00000006624	Smg5	99	61.805	ENSCJAG00000005684	SMG5	50	58.889	Callithrix_jacchus
ENSIPUG00000006624	Smg5	99	61.217	ENSCAFG00000016839	SMG5	99	61.650	Canis_familiaris
ENSIPUG00000006624	Smg5	99	61.217	ENSCAFG00020006061	SMG5	99	61.650	Canis_lupus_dingo
ENSIPUG00000006624	Smg5	99	61.960	ENSCHIG00000007709	SMG5	50	59.444	Capra_hircus
ENSIPUG00000006624	Smg5	86	51.852	ENSCHIG00000006323	-	86	51.852	Capra_hircus
ENSIPUG00000006624	Smg5	99	61.783	ENSTSYG00000004099	SMG5	99	60.307	Carlito_syrichta
ENSIPUG00000006624	Smg5	97	47.009	ENSCAPG00000003631	SMG5	100	47.701	Cavia_aperea
ENSIPUG00000006624	Smg5	99	62.613	ENSCPOG00000015696	SMG5	99	62.238	Cavia_porcellus
ENSIPUG00000006624	Smg5	99	62.078	ENSCCAG00000027409	SMG5	99	60.398	Cebus_capucinus
ENSIPUG00000006624	Smg5	99	62.078	ENSCATG00000030539	SMG5	99	61.469	Cercocebus_atys
ENSIPUG00000006624	Smg5	99	61.953	ENSCLAG00000003983	SMG5	99	62.329	Chinchilla_lanigera
ENSIPUG00000006624	Smg5	99	62.078	ENSCSAG00000002120	SMG5	99	61.469	Chlorocebus_sabaeus
ENSIPUG00000006624	Smg5	51	76.173	ENSCHOG00000008741	-	56	76.173	Choloepus_hoffmanni
ENSIPUG00000006624	Smg5	94	62.619	ENSCPBG00000025848	SMG5	100	62.952	Chrysemys_picta_bellii
ENSIPUG00000006624	Smg5	77	39.141	ENSCING00000008706	-	84	39.141	Ciona_intestinalis
ENSIPUG00000006624	Smg5	99	59.745	ENSCANG00000029208	SMG5	99	59.149	Colobus_angolensis_palliatus
ENSIPUG00000006624	Smg5	99	62.591	ENSCGRG00001006336	Smg5	99	62.591	Cricetulus_griseus_chok1gshd
ENSIPUG00000006624	Smg5	98	62.430	ENSCGRG00000005111	Smg5	100	62.396	Cricetulus_griseus_crigri
ENSIPUG00000006624	Smg5	100	76.043	ENSCSEG00000014220	smg5	100	76.418	Cynoglossus_semilaevis
ENSIPUG00000006624	Smg5	95	72.913	ENSCVAG00000000529	smg5	99	66.938	Cyprinodon_variegatus
ENSIPUG00000006624	Smg5	100	79.245	ENSDARG00000041481	smg5	100	79.335	Danio_rerio
ENSIPUG00000006624	Smg5	85	39.314	ENSDNOG00000039862	-	87	39.314	Dasypus_novemcinctus
ENSIPUG00000006624	Smg5	99	59.296	ENSDNOG00000000051	SMG5	99	59.855	Dasypus_novemcinctus
ENSIPUG00000006624	Smg5	99	62.602	ENSDORG00000010382	Smg5	50	59.300	Dipodomys_ordii
ENSIPUG00000006624	Smg5	75	83.495	ENSETEG00000010336	SMG5	81	83.495	Echinops_telfairi
ENSIPUG00000006624	Smg5	92	43.409	ENSEBUG00000003739	smg5	88	56.091	Eptatretus_burgeri
ENSIPUG00000006624	Smg5	99	62.091	ENSEASG00005019122	SMG5	99	62.056	Equus_asinus_asinus
ENSIPUG00000006624	Smg5	99	62.000	ENSECAG00000001389	SMG5	99	60.874	Equus_caballus
ENSIPUG00000006624	Smg5	67	80.172	ENSEEUG00000012690	SMG5	75	80.172	Erinaceus_europaeus
ENSIPUG00000006624	Smg5	100	78.122	ENSELUG00000012585	smg5	100	77.385	Esox_lucius
ENSIPUG00000006624	Smg5	99	62.340	ENSFCAG00000011783	SMG5	99	62.170	Felis_catus
ENSIPUG00000006624	Smg5	60	64.750	ENSFALG00000001166	-	98	61.940	Ficedula_albicollis
ENSIPUG00000006624	Smg5	98	62.210	ENSFDAG00000017388	SMG5	100	61.538	Fukomys_damarensis
ENSIPUG00000006624	Smg5	86	83.175	ENSFHEG00000013939	smg5	95	83.175	Fundulus_heteroclitus
ENSIPUG00000006624	Smg5	100	73.951	ENSGMOG00000007310	smg5	100	74.388	Gadus_morhua
ENSIPUG00000006624	Smg5	99	64.357	ENSGALG00000029918	-	99	63.043	Gallus_gallus
ENSIPUG00000006624	Smg5	92	83.387	ENSGAFG00000021691	smg5	99	83.387	Gambusia_affinis
ENSIPUG00000006624	Smg5	100	75.795	ENSGACG00000013142	smg5	100	75.993	Gasterosteus_aculeatus
ENSIPUG00000006624	Smg5	99	64.600	ENSGAGG00000016131	SMG5	99	63.546	Gopherus_agassizii
ENSIPUG00000006624	Smg5	99	61.896	ENSGGOG00000010932	SMG5	99	60.381	Gorilla_gorilla
ENSIPUG00000006624	Smg5	100	77.160	ENSHBUG00000008654	smg5	100	77.573	Haplochromis_burtoni
ENSIPUG00000006624	Smg5	99	61.965	ENSHGLG00000019152	SMG5	50	59.032	Heterocephalus_glaber_female
ENSIPUG00000006624	Smg5	85	77.162	ENSHCOG00000010229	smg5	93	81.643	Hippocampus_comes
ENSIPUG00000006624	Smg5	99	62.135	ENSSTOG00000001780	SMG5	99	61.031	Ictidomys_tridecemlineatus
ENSIPUG00000006624	Smg5	99	62.238	ENSJJAG00000022763	Smg5	50	60.185	Jaculus_jaculus
ENSIPUG00000006624	Smg5	100	77.093	ENSKMAG00000014586	smg5	100	78.242	Kryptolebias_marmoratus
ENSIPUG00000006624	Smg5	100	77.728	ENSLBEG00000002145	smg5	100	77.906	Labrus_bergylta
ENSIPUG00000006624	Smg5	99	56.900	ENSLACG00000010521	SMG5	99	56.396	Latimeria_chalumnae
ENSIPUG00000006624	Smg5	100	68.345	ENSLOCG00000008380	smg5	99	72.532	Lepisosteus_oculatus
ENSIPUG00000006624	Smg5	99	61.922	ENSLAFG00000006241	SMG5	99	61.531	Loxodonta_africana
ENSIPUG00000006624	Smg5	99	61.987	ENSMFAG00000045357	SMG5	99	61.378	Macaca_fascicularis
ENSIPUG00000006624	Smg5	99	61.987	ENSMMUG00000000090	SMG5	99	61.378	Macaca_mulatta
ENSIPUG00000006624	Smg5	99	61.896	ENSMNEG00000044425	SMG5	99	61.287	Macaca_nemestrina
ENSIPUG00000006624	Smg5	99	57.130	ENSMLEG00000041192	SMG5	99	56.549	Mandrillus_leucophaeus
ENSIPUG00000006624	Smg5	100	77.374	ENSMAMG00000010683	smg5	100	77.462	Mastacembelus_armatus
ENSIPUG00000006624	Smg5	100	72.990	ENSMZEG00005015815	smg5	99	72.507	Maylandia_zebra
ENSIPUG00000006624	Smg5	66	68.094	ENSMZEG00005016543	smg5	100	67.490	Maylandia_zebra
ENSIPUG00000006624	Smg5	99	62.216	ENSMAUG00000010381	Smg5	99	62.214	Mesocricetus_auratus
ENSIPUG00000006624	Smg5	99	62.318	ENSMICG00000002257	SMG5	50	59.369	Microcebus_murinus
ENSIPUG00000006624	Smg5	99	62.670	ENSMOCG00000016590	Smg5	99	62.500	Microtus_ochrogaster
ENSIPUG00000006624	Smg5	100	74.423	ENSMMOG00000017199	smg5	100	74.778	Mola_mola
ENSIPUG00000006624	Smg5	69	35.171	ENSMODG00000004511	-	77	35.864	Monodelphis_domestica
ENSIPUG00000006624	Smg5	72	34.750	ENSMODG00000004532	-	86	35.250	Monodelphis_domestica
ENSIPUG00000006624	Smg5	72	34.635	ENSMODG00000010675	-	89	34.635	Monodelphis_domestica
ENSIPUG00000006624	Smg5	68	34.771	ENSMODG00000004735	-	85	34.771	Monodelphis_domestica
ENSIPUG00000006624	Smg5	100	76.413	ENSMALG00000010375	smg5	100	76.216	Monopterus_albus
ENSIPUG00000006624	Smg5	99	62.329	MGP_CAROLIEiJ_G0025163	Smg5	100	88.827	Mus_caroli
ENSIPUG00000006624	Smg5	99	62.138	ENSMUSG00000001415	Smg5	99	88.827	Mus_musculus
ENSIPUG00000006624	Smg5	99	62.682	MGP_PahariEiJ_G0026606	Smg5	100	89.385	Mus_pahari
ENSIPUG00000006624	Smg5	99	62.625	MGP_SPRETEiJ_G0026104	Smg5	100	88.827	Mus_spretus
ENSIPUG00000006624	Smg5	94	60.832	ENSMPUG00000004546	SMG5	100	60.000	Mustela_putorius_furo
ENSIPUG00000006624	Smg5	99	62.022	ENSMLUG00000008518	SMG5	92	79.433	Myotis_lucifugus
ENSIPUG00000006624	Smg5	99	62.283	ENSNGAG00000020706	Smg5	99	60.714	Nannospalax_galili
ENSIPUG00000006624	Smg5	81	48.832	ENSNGAG00000012101	-	88	48.718	Nannospalax_galili
ENSIPUG00000006624	Smg5	97	71.283	ENSNBRG00000004332	smg5	98	71.933	Neolamprologus_brichardi
ENSIPUG00000006624	Smg5	99	62.078	ENSNLEG00000012439	SMG5	99	60.562	Nomascus_leucogenys
ENSIPUG00000006624	Smg5	99	61.770	ENSMEUG00000012834	SMG5	99	61.405	Notamacropus_eugenii
ENSIPUG00000006624	Smg5	99	62.044	ENSOPRG00000009152	SMG5	50	58.704	Ochotona_princeps
ENSIPUG00000006624	Smg5	99	63.230	ENSODEG00000012237	SMG5	99	63.330	Octodon_degus
ENSIPUG00000006624	Smg5	100	78.338	ENSONIG00000008632	smg5	100	79.115	Oreochromis_niloticus
ENSIPUG00000006624	Smg5	98	62.361	ENSOCUG00000012886	SMG5	100	61.688	Oryctolagus_cuniculus
ENSIPUG00000006624	Smg5	79	45.169	ENSOCUG00000023338	-	86	45.169	Oryctolagus_cuniculus
ENSIPUG00000006624	Smg5	100	75.311	ENSORLG00000016239	smg5	100	76.288	Oryzias_latipes
ENSIPUG00000006624	Smg5	100	75.688	ENSORLG00020013127	smg5	100	76.664	Oryzias_latipes_hni
ENSIPUG00000006624	Smg5	100	75.510	ENSORLG00015019014	smg5	100	76.398	Oryzias_latipes_hsok
ENSIPUG00000006624	Smg5	84	75.133	ENSOMEG00000021330	smg5	93	82.222	Oryzias_melastigma
ENSIPUG00000006624	Smg5	99	62.066	ENSOGAG00000004966	SMG5	50	58.333	Otolemur_garnettii
ENSIPUG00000006624	Smg5	99	61.871	ENSOARG00000005778	SMG5	99	61.935	Ovis_aries
ENSIPUG00000006624	Smg5	87	52.048	ENSOARG00000011963	-	86	52.048	Ovis_aries
ENSIPUG00000006624	Smg5	99	61.987	ENSPPAG00000011996	SMG5	99	60.471	Pan_paniscus
ENSIPUG00000006624	Smg5	98	61.989	ENSPPRG00000011901	SMG5	100	61.724	Panthera_pardus
ENSIPUG00000006624	Smg5	97	59.340	ENSPTIG00000007892	SMG5	98	58.614	Panthera_tigris_altaica
ENSIPUG00000006624	Smg5	87	79.656	ENSPTRG00000049282	-	83	79.656	Pan_troglodytes
ENSIPUG00000006624	Smg5	99	61.987	ENSPTRG00000023925	SMG5	99	60.471	Pan_troglodytes
ENSIPUG00000006624	Smg5	99	62.078	ENSPANG00000011201	SMG5	99	61.469	Papio_anubis
ENSIPUG00000006624	Smg5	100	76.444	ENSPKIG00000009402	smg5	100	75.424	Paramormyrops_kingsleyae
ENSIPUG00000006624	Smg5	98	64.875	ENSPSIG00000015198	SMG5	100	63.729	Pelodiscus_sinensis
ENSIPUG00000006624	Smg5	100	70.662	ENSPMGG00000010465	smg5	100	69.581	Periophthalmus_magnuspinnatus
ENSIPUG00000006624	Smg5	99	61.861	ENSPEMG00000001819	Smg5	99	61.040	Peromyscus_maniculatus_bairdii
ENSIPUG00000006624	Smg5	85	62.594	ENSPMAG00000000410	smg5	91	63.092	Petromyzon_marinus
ENSIPUG00000006624	Smg5	99	62.970	ENSPCIG00000018938	SMG5	99	62.580	Phascolarctos_cinereus
ENSIPUG00000006624	Smg5	100	76.372	ENSPFOG00000010191	smg5	100	77.293	Poecilia_formosa
ENSIPUG00000006624	Smg5	100	76.664	ENSPLAG00000009332	smg5	100	77.411	Poecilia_latipinna
ENSIPUG00000006624	Smg5	100	76.549	ENSPMEG00000014105	smg5	100	77.382	Poecilia_mexicana
ENSIPUG00000006624	Smg5	100	77.224	ENSPREG00000017713	smg5	100	77.768	Poecilia_reticulata
ENSIPUG00000006624	Smg5	99	62.078	ENSPPYG00000000723	SMG5	99	60.562	Pongo_abelii
ENSIPUG00000006624	Smg5	76	78.889	ENSPCAG00000008412	SMG5	80	78.889	Procavia_capensis
ENSIPUG00000006624	Smg5	99	62.157	ENSPCOG00000004741	SMG5	99	61.679	Propithecus_coquereli
ENSIPUG00000006624	Smg5	99	55.383	ENSPVAG00000016748	SMG5	99	55.687	Pteropus_vampyrus
ENSIPUG00000006624	Smg5	100	76.984	ENSPNYG00000013397	smg5	100	77.309	Pundamilia_nyererei
ENSIPUG00000006624	Smg5	100	85.998	ENSPNAG00000028363	smg5	100	85.108	Pygocentrus_nattereri
ENSIPUG00000006624	Smg5	99	61.953	ENSRNOG00000019590	Smg5	99	62.135	Rattus_norvegicus
ENSIPUG00000006624	Smg5	99	62.078	ENSRBIG00000027428	SMG5	99	61.469	Rhinopithecus_bieti
ENSIPUG00000006624	Smg5	99	61.987	ENSRROG00000030035	SMG5	99	61.378	Rhinopithecus_roxellana
ENSIPUG00000006624	Smg5	99	62.261	ENSSBOG00000033339	SMG5	99	60.579	Saimiri_boliviensis_boliviensis
ENSIPUG00000006624	Smg5	52	36.160	ENSSHAG00000000935	-	82	36.160	Sarcophilus_harrisii
ENSIPUG00000006624	Smg5	71	41.935	ENSSHAG00000009572	-	79	41.935	Sarcophilus_harrisii
ENSIPUG00000006624	Smg5	98	62.257	ENSSHAG00000014163	SMG5	100	61.887	Sarcophilus_harrisii
ENSIPUG00000006624	Smg5	70	36.111	ENSSHAG00000000561	-	89	36.111	Sarcophilus_harrisii
ENSIPUG00000006624	Smg5	100	78.410	ENSSFOG00015024175	smg5	100	78.139	Scleropages_formosus
ENSIPUG00000006624	Smg5	100	77.285	ENSSMAG00000013059	smg5	100	77.699	Scophthalmus_maximus
ENSIPUG00000006624	Smg5	100	77.337	ENSSDUG00000007122	smg5	100	78.111	Seriola_dumerili
ENSIPUG00000006624	Smg5	100	77.699	ENSSLDG00000011418	smg5	100	78.299	Seriola_lalandi_dorsalis
ENSIPUG00000006624	Smg5	91	55.276	ENSSARG00000012484	SMG5	99	54.482	Sorex_araneus
ENSIPUG00000006624	Smg5	94	62.702	ENSSPUG00000002260	SMG5	100	61.333	Sphenodon_punctatus
ENSIPUG00000006624	Smg5	100	76.855	ENSSPAG00000014266	smg5	100	78.122	Stegastes_partitus
ENSIPUG00000006624	Smg5	99	62.545	ENSSSCG00000006490	-	100	60.978	Sus_scrofa
ENSIPUG00000006624	Smg5	99	48.226	ENSSSCG00000039308	-	99	48.087	Sus_scrofa
ENSIPUG00000006624	Smg5	99	64.481	ENSTGUG00000003748	-	99	63.504	Taeniopygia_guttata
ENSIPUG00000006624	Smg5	100	71.858	ENSTRUG00000012580	smg5	100	72.566	Takifugu_rubripes
ENSIPUG00000006624	Smg5	100	72.298	ENSTNIG00000010303	smg5	100	72.487	Tetraodon_nigroviridis
ENSIPUG00000006624	Smg5	53	85.222	ENSTBEG00000002777	SMG5	58	85.222	Tupaia_belangeri
ENSIPUG00000006624	Smg5	99	59.091	ENSTTRG00000001401	SMG5	99	58.032	Tursiops_truncatus
ENSIPUG00000006624	Smg5	99	61.035	ENSUAMG00000013721	SMG5	99	60.889	Ursus_americanus
ENSIPUG00000006624	Smg5	99	56.256	ENSUMAG00000018041	SMG5	94	75.181	Ursus_maritimus
ENSIPUG00000006624	Smg5	92	71.287	ENSVPAG00000009446	SMG5	99	54.336	Vicugna_pacos
ENSIPUG00000006624	Smg5	99	61.308	ENSVVUG00000005887	SMG5	99	61.588	Vulpes_vulpes
ENSIPUG00000006624	Smg5	79	55.415	ENSXETG00000033791	SMG5	99	54.335	Xenopus_tropicalis
ENSIPUG00000006624	Smg5	81	86.264	ENSXCOG00000004379	smg5	99	86.264	Xiphophorus_couchianus
ENSIPUG00000006624	Smg5	100	77.046	ENSXMAG00000013499	smg5	100	77.313	Xiphophorus_maculatus