EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000006639 (Gene tree)
Gene ID: 108257946
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 33663 bases
Position: chr25:6293640-6327302
Accession: 108257946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000009687	XRN_N	PF03159.18	1e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000010114	-	7369	XM_017456122	ENSIPUP00000009687	965 (aa)	XP_017311611	A0A2D0Q1P7

Gene Model

Click here to download ENSIPUG00000006639's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000006639's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000006639	xrn2	100	70.031	ENSG00000088930	XRN2	100	70.031	Homo_sapiens
ENSIPUG00000006639	xrn2	97	81.204	ENSAPOG00000009818	xrn2	100	79.738	Acanthochromis_polyacanthus
ENSIPUG00000006639	xrn2	100	69.592	ENSAMEG00000012581	XRN2	100	69.592	Ailuropoda_melanoleuca
ENSIPUG00000006639	xrn2	96	75.761	ENSACIG00000015047	xrn2	95	85.143	Amphilophus_citrinellus
ENSIPUG00000006639	xrn2	97	82.049	ENSAOCG00000023632	xrn2	100	80.525	Amphiprion_ocellaris
ENSIPUG00000006639	xrn2	97	82.049	ENSAPEG00000014871	xrn2	100	80.444	Amphiprion_percula
ENSIPUG00000006639	xrn2	96	81.760	ENSATEG00000001273	xrn2	98	81.551	Anabas_testudineus
ENSIPUG00000006639	xrn2	98	69.896	ENSAPLG00000013869	XRN2	100	69.896	Anas_platyrhynchos
ENSIPUG00000006639	xrn2	100	69.270	ENSACAG00000005565	XRN2	100	69.270	Anolis_carolinensis
ENSIPUG00000006639	xrn2	100	69.929	ENSANAG00000020126	XRN2	100	69.929	Aotus_nancymaae
ENSIPUG00000006639	xrn2	90	80.641	ENSACLG00000010522	xrn2	94	83.939	Astatotilapia_calliptera
ENSIPUG00000006639	xrn2	100	86.921	ENSAMXG00000018301	xrn2	100	86.921	Astyanax_mexicanus
ENSIPUG00000006639	xrn2	100	69.215	ENSBTAG00000011304	XRN2	100	69.215	Bos_taurus
ENSIPUG00000006639	xrn2	100	69.827	ENSCJAG00000005611	XRN2	100	69.827	Callithrix_jacchus
ENSIPUG00000006639	xrn2	100	69.592	ENSCAFG00000005185	XRN2	100	69.592	Canis_familiaris
ENSIPUG00000006639	xrn2	100	69.592	ENSCAFG00020027479	XRN2	100	69.592	Canis_lupus_dingo
ENSIPUG00000006639	xrn2	100	69.317	ENSCHIG00000006921	XRN2	100	69.317	Capra_hircus
ENSIPUG00000006639	xrn2	100	69.521	ENSTSYG00000008315	XRN2	100	69.521	Carlito_syrichta
ENSIPUG00000006639	xrn2	97	59.770	ENSCAPG00000010773	XRN2	99	58.934	Cavia_aperea
ENSIPUG00000006639	xrn2	100	70.234	ENSCPOG00000009407	XRN2	100	70.234	Cavia_porcellus
ENSIPUG00000006639	xrn2	100	70.031	ENSCATG00000040350	XRN2	100	70.031	Cercocebus_atys
ENSIPUG00000006639	xrn2	100	70.234	ENSCLAG00000013419	XRN2	100	70.234	Chinchilla_lanigera
ENSIPUG00000006639	xrn2	100	70.031	ENSCSAG00000011094	XRN2	100	70.031	Chlorocebus_sabaeus
ENSIPUG00000006639	xrn2	61	87.634	ENSCHOG00000013404	XRN2	63	87.634	Choloepus_hoffmanni
ENSIPUG00000006639	xrn2	100	71.240	ENSCPBG00000023533	XRN2	100	71.240	Chrysemys_picta_bellii
ENSIPUG00000006639	xrn2	86	59.622	ENSCING00000022336	-	100	59.811	Ciona_intestinalis
ENSIPUG00000006639	xrn2	82	70.023	ENSCSAVG00000011217	-	96	70.602	Ciona_savignyi
ENSIPUG00000006639	xrn2	100	70.031	ENSCANG00000040240	XRN2	100	70.031	Colobus_angolensis_palliatus
ENSIPUG00000006639	xrn2	98	70.613	ENSCGRG00001010676	Xrn2	100	70.820	Cricetulus_griseus_chok1gshd
ENSIPUG00000006639	xrn2	97	69.279	ENSCGRG00000006378	Xrn2	99	69.488	Cricetulus_griseus_crigri
ENSIPUG00000006639	xrn2	54	78.503	ENSCSEG00000005628	xrn2	100	78.503	Cynoglossus_semilaevis
ENSIPUG00000006639	xrn2	93	79.218	ENSCVAG00000018999	xrn2	98	88.550	Cyprinodon_variegatus
ENSIPUG00000006639	xrn2	100	81.734	ENSDARG00000101900	xrn2	96	88.550	Danio_rerio
ENSIPUG00000006639	xrn2	100	70.133	ENSDNOG00000001895	XRN2	100	70.133	Dasypus_novemcinctus
ENSIPUG00000006639	xrn2	100	68.909	ENSDORG00000005434	Xrn2	100	68.909	Dipodomys_ordii
ENSIPUG00000006639	xrn2	86	55.383	FBgn0031868	Rat1	89	55.319	Drosophila_melanogaster
ENSIPUG00000006639	xrn2	91	80.535	ENSETEG00000001740	XRN2	92	80.535	Echinops_telfairi
ENSIPUG00000006639	xrn2	84	71.290	ENSEBUG00000016136	xrn2	100	71.290	Eptatretus_burgeri
ENSIPUG00000006639	xrn2	100	70.204	ENSEASG00005002484	XRN2	100	70.204	Equus_asinus_asinus
ENSIPUG00000006639	xrn2	94	92.308	ENSECAG00000018988	XRN2	96	92.308	Equus_caballus
ENSIPUG00000006639	xrn2	67	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSIPUG00000006639	xrn2	100	78.278	ENSELUG00000000552	xrn2	100	78.979	Esox_lucius
ENSIPUG00000006639	xrn2	100	69.388	ENSFCAG00000007970	XRN2	100	69.388	Felis_catus
ENSIPUG00000006639	xrn2	100	69.939	ENSFALG00000004508	XRN2	100	69.939	Ficedula_albicollis
ENSIPUG00000006639	xrn2	100	69.929	ENSFDAG00000016311	XRN2	100	69.929	Fukomys_damarensis
ENSIPUG00000006639	xrn2	54	80.497	ENSFHEG00000013039	xrn2	98	80.497	Fundulus_heteroclitus
ENSIPUG00000006639	xrn2	86	79.832	ENSGMOG00000013436	xrn2	100	79.832	Gadus_morhua
ENSIPUG00000006639	xrn2	100	69.919	ENSGALG00000008372	XRN2	100	69.919	Gallus_gallus
ENSIPUG00000006639	xrn2	92	81.278	ENSGAFG00000014284	xrn2	99	81.278	Gambusia_affinis
ENSIPUG00000006639	xrn2	87	80.380	ENSGACG00000011870	xrn2	96	87.140	Gasterosteus_aculeatus
ENSIPUG00000006639	xrn2	100	71.443	ENSGAGG00000004884	XRN2	100	71.443	Gopherus_agassizii
ENSIPUG00000006639	xrn2	100	70.031	ENSGGOG00000013738	XRN2	100	70.031	Gorilla_gorilla
ENSIPUG00000006639	xrn2	54	83.939	ENSHBUG00000005077	xrn2	94	83.939	Haplochromis_burtoni
ENSIPUG00000006639	xrn2	100	69.317	ENSHGLG00000014831	XRN2	100	69.317	Heterocephalus_glaber_female
ENSIPUG00000006639	xrn2	100	69.317	ENSHGLG00100013130	XRN2	100	69.317	Heterocephalus_glaber_male
ENSIPUG00000006639	xrn2	99	76.100	ENSHCOG00000011994	xrn2	99	76.600	Hippocampus_comes
ENSIPUG00000006639	xrn2	100	70.031	ENSSTOG00000000589	XRN2	100	70.031	Ictidomys_tridecemlineatus
ENSIPUG00000006639	xrn2	100	70.336	ENSJJAG00000022128	Xrn2	100	70.336	Jaculus_jaculus
ENSIPUG00000006639	xrn2	54	86.590	ENSLBEG00000010041	xrn2	100	86.590	Labrus_bergylta
ENSIPUG00000006639	xrn2	94	70.130	ENSLACG00000008307	XRN2	97	74.631	Latimeria_chalumnae
ENSIPUG00000006639	xrn2	99	73.797	ENSLOCG00000016874	xrn2	93	81.188	Lepisosteus_oculatus
ENSIPUG00000006639	xrn2	100	69.623	ENSLAFG00000014624	XRN2	100	69.623	Loxodonta_africana
ENSIPUG00000006639	xrn2	100	70.031	ENSMFAG00000038122	XRN2	100	70.031	Macaca_fascicularis
ENSIPUG00000006639	xrn2	100	70.031	ENSMMUG00000011405	XRN2	100	70.031	Macaca_mulatta
ENSIPUG00000006639	xrn2	100	69.929	ENSMNEG00000040626	XRN2	100	69.929	Macaca_nemestrina
ENSIPUG00000006639	xrn2	100	69.929	ENSMLEG00000041897	XRN2	100	69.929	Mandrillus_leucophaeus
ENSIPUG00000006639	xrn2	96	81.828	ENSMAMG00000008633	xrn2	98	80.622	Mastacembelus_armatus
ENSIPUG00000006639	xrn2	90	82.474	ENSMZEG00005022362	xrn2	96	82.474	Maylandia_zebra
ENSIPUG00000006639	xrn2	99	68.788	ENSMGAG00000003196	XRN2	99	68.788	Meleagris_gallopavo
ENSIPUG00000006639	xrn2	100	70.540	ENSMAUG00000021842	Xrn2	100	70.540	Mesocricetus_auratus
ENSIPUG00000006639	xrn2	100	69.796	ENSMICG00000008126	XRN2	100	69.796	Microcebus_murinus
ENSIPUG00000006639	xrn2	100	70.102	ENSMOCG00000012588	Xrn2	100	70.102	Microtus_ochrogaster
ENSIPUG00000006639	xrn2	92	82.034	ENSMMOG00000017576	xrn2	96	83.871	Mola_mola
ENSIPUG00000006639	xrn2	100	69.827	ENSMODG00000006163	XRN2	100	69.827	Monodelphis_domestica
ENSIPUG00000006639	xrn2	91	81.818	ENSMALG00000011355	xrn2	95	88.123	Monopterus_albus
ENSIPUG00000006639	xrn2	100	69.725	MGP_CAROLIEiJ_G0024400	Xrn2	100	69.725	Mus_caroli
ENSIPUG00000006639	xrn2	100	69.929	ENSMUSG00000027433	Xrn2	100	69.929	Mus_musculus
ENSIPUG00000006639	xrn2	100	69.827	MGP_PahariEiJ_G0025843	Xrn2	100	69.827	Mus_pahari
ENSIPUG00000006639	xrn2	100	69.929	MGP_SPRETEiJ_G0025318	Xrn2	94	83.495	Mus_spretus
ENSIPUG00000006639	xrn2	100	68.305	ENSMPUG00000001198	XRN2	93	68.305	Mustela_putorius_furo
ENSIPUG00000006639	xrn2	100	70.000	ENSMLUG00000001536	XRN2	100	70.000	Myotis_lucifugus
ENSIPUG00000006639	xrn2	100	69.627	ENSNGAG00000018138	Xrn2	100	69.627	Nannospalax_galili
ENSIPUG00000006639	xrn2	90	82.474	ENSNBRG00000008062	xrn2	96	82.474	Neolamprologus_brichardi
ENSIPUG00000006639	xrn2	100	70.031	ENSNLEG00000009991	XRN2	100	70.031	Nomascus_leucogenys
ENSIPUG00000006639	xrn2	51	80.000	ENSMEUG00000008622	-	53	80.000	Notamacropus_eugenii
ENSIPUG00000006639	xrn2	61	73.158	ENSOPRG00000001397	-	63	73.158	Ochotona_princeps
ENSIPUG00000006639	xrn2	97	64.581	ENSODEG00000000860	-	98	64.475	Octodon_degus
ENSIPUG00000006639	xrn2	100	70.031	ENSODEG00000010745	-	100	70.031	Octodon_degus
ENSIPUG00000006639	xrn2	100	77.100	ENSONIG00000018720	xrn2	100	77.024	Oreochromis_niloticus
ENSIPUG00000006639	xrn2	100	69.340	ENSOANG00000015673	XRN2	100	69.340	Ornithorhynchus_anatinus
ENSIPUG00000006639	xrn2	100	69.929	ENSOCUG00000013468	XRN2	100	69.929	Oryctolagus_cuniculus
ENSIPUG00000006639	xrn2	99	78.807	ENSORLG00000017213	xrn2	96	83.162	Oryzias_latipes
ENSIPUG00000006639	xrn2	99	78.498	ENSORLG00020001824	xrn2	100	78.419	Oryzias_latipes_hni
ENSIPUG00000006639	xrn2	99	77.984	ENSORLG00015019747	xrn2	100	77.913	Oryzias_latipes_hsok
ENSIPUG00000006639	xrn2	98	77.847	ENSOMEG00000019820	xrn2	100	77.016	Oryzias_melastigma
ENSIPUG00000006639	xrn2	100	70.336	ENSOGAG00000001068	XRN2	100	70.336	Otolemur_garnettii
ENSIPUG00000006639	xrn2	97	68.586	ENSOARG00000004443	XRN2	99	68.586	Ovis_aries
ENSIPUG00000006639	xrn2	100	70.031	ENSPPAG00000033549	XRN2	100	70.031	Pan_paniscus
ENSIPUG00000006639	xrn2	100	69.388	ENSPPRG00000008732	XRN2	100	69.388	Panthera_pardus
ENSIPUG00000006639	xrn2	97	68.763	ENSPTIG00000015683	XRN2	97	68.763	Panthera_tigris_altaica
ENSIPUG00000006639	xrn2	100	70.031	ENSPTRG00000013308	XRN2	100	70.031	Pan_troglodytes
ENSIPUG00000006639	xrn2	100	70.031	ENSPANG00000018088	XRN2	100	70.031	Papio_anubis
ENSIPUG00000006639	xrn2	100	77.241	ENSPKIG00000016889	xrn2	100	78.354	Paramormyrops_kingsleyae
ENSIPUG00000006639	xrn2	80	76.508	ENSPSIG00000014666	XRN2	100	76.508	Pelodiscus_sinensis
ENSIPUG00000006639	xrn2	100	70.234	ENSPEMG00000000111	Xrn2	100	70.234	Peromyscus_maniculatus_bairdii
ENSIPUG00000006639	xrn2	100	77.393	ENSPFOG00000004182	xrn2	99	77.721	Poecilia_formosa
ENSIPUG00000006639	xrn2	92	81.278	ENSPLAG00000007351	xrn2	98	81.278	Poecilia_latipinna
ENSIPUG00000006639	xrn2	94	76.185	ENSPMEG00000011798	xrn2	99	76.534	Poecilia_mexicana
ENSIPUG00000006639	xrn2	92	81.194	ENSPREG00000012452	xrn2	99	80.353	Poecilia_reticulata
ENSIPUG00000006639	xrn2	100	69.623	ENSPPYG00000010755	XRN2	100	69.623	Pongo_abelii
ENSIPUG00000006639	xrn2	100	66.226	ENSPCAG00000011191	XRN2	100	66.020	Procavia_capensis
ENSIPUG00000006639	xrn2	100	64.388	ENSPCOG00000016468	XRN2	100	64.388	Propithecus_coquereli
ENSIPUG00000006639	xrn2	93	64.894	ENSPVAG00000004596	XRN2	93	64.894	Pteropus_vampyrus
ENSIPUG00000006639	xrn2	90	80.641	ENSPNYG00000001765	xrn2	96	80.641	Pundamilia_nyererei
ENSIPUG00000006639	xrn2	100	85.934	ENSPNAG00000010956	xrn2	99	85.934	Pygocentrus_nattereri
ENSIPUG00000006639	xrn2	100	70.438	ENSRNOG00000011785	Xrn2	100	70.438	Rattus_norvegicus
ENSIPUG00000006639	xrn2	86	75.812	ENSRBIG00000036193	XRN2	100	75.812	Rhinopithecus_bieti
ENSIPUG00000006639	xrn2	100	70.031	ENSRROG00000044400	XRN2	90	70.031	Rhinopithecus_roxellana
ENSIPUG00000006639	xrn2	65	53.299	YOR048C	RAT1	64	53.269	Saccharomyces_cerevisiae
ENSIPUG00000006639	xrn2	100	70.031	ENSSBOG00000021014	XRN2	100	70.031	Saimiri_boliviensis_boliviensis
ENSIPUG00000006639	xrn2	100	78.138	ENSSFOG00015001091	xrn2	100	78.138	Scleropages_formosus
ENSIPUG00000006639	xrn2	92	81.180	ENSSMAG00000007834	xrn2	100	77.100	Scophthalmus_maximus
ENSIPUG00000006639	xrn2	96	79.936	ENSSDUG00000012802	xrn2	98	83.144	Seriola_dumerili
ENSIPUG00000006639	xrn2	93	82.965	ENSSLDG00000021273	xrn2	100	82.965	Seriola_lalandi_dorsalis
ENSIPUG00000006639	xrn2	68	96.000	ENSSARG00000005859	-	68	96.000	Sorex_araneus
ENSIPUG00000006639	xrn2	98	67.842	ENSSPUG00000005485	XRN2	95	67.842	Sphenodon_punctatus
ENSIPUG00000006639	xrn2	100	79.049	ENSSPAG00000016027	xrn2	99	79.858	Stegastes_partitus
ENSIPUG00000006639	xrn2	100	68.367	ENSSSCG00000007109	XRN2	100	68.367	Sus_scrofa
ENSIPUG00000006639	xrn2	100	68.560	ENSTGUG00000007535	XRN2	100	68.560	Taeniopygia_guttata
ENSIPUG00000006639	xrn2	100	74.826	ENSTRUG00000015489	xrn2	100	76.418	Takifugu_rubripes
ENSIPUG00000006639	xrn2	100	73.642	ENSTNIG00000010712	xrn2	100	73.742	Tetraodon_nigroviridis
ENSIPUG00000006639	xrn2	100	69.623	ENSTBEG00000004119	XRN2	100	69.623	Tupaia_belangeri
ENSIPUG00000006639	xrn2	93	76.761	ENSTTRG00000009087	XRN2	93	76.761	Tursiops_truncatus
ENSIPUG00000006639	xrn2	100	69.592	ENSUAMG00000024634	XRN2	100	69.592	Ursus_americanus
ENSIPUG00000006639	xrn2	97	69.110	ENSUMAG00000004012	XRN2	95	69.110	Ursus_maritimus
ENSIPUG00000006639	xrn2	80	82.848	ENSVPAG00000010694	XRN2	83	82.848	Vicugna_pacos
ENSIPUG00000006639	xrn2	100	69.592	ENSVVUG00000012178	XRN2	100	69.592	Vulpes_vulpes
ENSIPUG00000006639	xrn2	100	72.262	ENSXETG00000023501	xrn2	100	72.262	Xenopus_tropicalis
ENSIPUG00000006639	xrn2	100	77.393	ENSXMAG00000000242	xrn2	92	87.591	Xiphophorus_maculatus