EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000007089 (Gene tree)
Gene ID: 108280649
Gene Symbol: RBM3
Alias: CIRP
Full Name: cold-inducible RNA-binding protein B-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 4741 bases
Position: chr20:18366660-18371400
Accession: 108280649
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000010366	RRM_1	PF00076.22	1.1e-25	1	1
ENSIPUP00000010375	RRM_1	PF00076.22	1.2e-25	1	1
ENSIPUP00000010381	RRM_1	PF00076.22	1.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000010828	RBM3-203	1359	XM_017495870	ENSIPUP00000010381	170 (aa)	XP_017351359	A0A2D0T906
ENSIPUT00000010822	RBM3-202	2132	XM_017495871	ENSIPUP00000010375	170 (aa)	XP_017351360	A0A2D0T906
ENSIPUT00000010813	RBM3-201	598	-	ENSIPUP00000010366	167 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000007089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000007089	RBM3	56	37.500	ENSIPUG00000001381	elavl4	57	37.500
ENSIPUG00000007089	RBM3	58	36.634	ENSIPUG00000001991	-	69	40.230
ENSIPUG00000007089	RBM3	57	37.500	ENSIPUG00000013002	elavl3	62	37.500
ENSIPUG00000007089	RBM3	53	32.584	ENSIPUG00000024435	-	55	34.177
ENSIPUG00000007089	RBM3	78	33.333	ENSIPUG00000006780	-	73	35.616
ENSIPUG00000007089	RBM3	57	49.296	ENSIPUG00000022432	hnrnpa1b	51	47.368
ENSIPUG00000007089	RBM3	58	38.889	ENSIPUG00000014082	elavl1a	67	38.889
ENSIPUG00000007089	RBM3	63	49.296	ENSIPUG00000022440	-	55	47.368
ENSIPUG00000007089	RBM3	100	50.242	ENSIPUG00000000698	cirbpb	100	53.695
ENSIPUG00000007089	RBM3	53	38.961	ENSIPUG00000006760	-	75	36.111
ENSIPUG00000007089	RBM3	56	35.616	ENSIPUG00000012337	elavl2	55	35.616

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007089	RBM3	99	61.765	ENSG00000099622	CIRBP	94	83.333	Homo_sapiens
ENSIPUG00000007089	RBM3	51	63.953	ENSG00000102317	RBM3	52	65.854	Homo_sapiens
ENSIPUG00000007089	RBM3	54	63.736	ENSAMEG00000012653	RBM3	51	67.073	Ailuropoda_melanoleuca
ENSIPUG00000007089	RBM3	98	56.364	ENSACAG00000023931	-	55	73.171	Anolis_carolinensis
ENSIPUG00000007089	RBM3	54	62.637	ENSANAG00000028883	-	84	60.526	Aotus_nancymaae
ENSIPUG00000007089	RBM3	54	51.648	ENSANAG00000028569	-	50	53.659	Aotus_nancymaae
ENSIPUG00000007089	RBM3	71	65.000	ENSANAG00000027805	-	56	70.833	Aotus_nancymaae
ENSIPUG00000007089	RBM3	56	62.105	ENSBTAG00000025848	RBM3	80	61.111	Bos_taurus
ENSIPUG00000007089	RBM3	54	52.747	ENSCJAG00000047359	-	58	54.878	Callithrix_jacchus
ENSIPUG00000007089	RBM3	54	62.637	ENSCJAG00000047341	-	84	60.526	Callithrix_jacchus
ENSIPUG00000007089	RBM3	54	61.538	ENSCAFG00000015485	RBM3	51	64.634	Canis_familiaris
ENSIPUG00000007089	RBM3	64	57.944	ENSCAFG00000016002	-	55	65.854	Canis_familiaris
ENSIPUG00000007089	RBM3	54	60.440	ENSCAFG00020017705	-	69	63.415	Canis_lupus_dingo
ENSIPUG00000007089	RBM3	98	47.879	ENSCHIG00000009007	RBM3	58	64.634	Capra_hircus
ENSIPUG00000007089	RBM3	69	51.724	ENSTSYG00000031540	-	59	57.317	Carlito_syrichta
ENSIPUG00000007089	RBM3	51	65.116	ENSTSYG00000008670	-	80	63.889	Carlito_syrichta
ENSIPUG00000007089	RBM3	56	60.000	ENSTSYG00000035938	-	58	60.976	Carlito_syrichta
ENSIPUG00000007089	RBM3	52	55.172	ENSTSYG00000034265	-	55	56.627	Carlito_syrichta
ENSIPUG00000007089	RBM3	51	54.651	ENSTSYG00000035220	-	59	56.098	Carlito_syrichta
ENSIPUG00000007089	RBM3	60	61.386	ENSCAPG00000005923	RBM3	51	65.854	Cavia_aperea
ENSIPUG00000007089	RBM3	60	62.376	ENSCPOG00000003553	RBM3	52	67.073	Cavia_porcellus
ENSIPUG00000007089	RBM3	54	62.637	ENSCCAG00000038019	-	84	60.526	Cebus_capucinus
ENSIPUG00000007089	RBM3	98	43.713	ENSCCAG00000035552	-	55	52.439	Cebus_capucinus
ENSIPUG00000007089	RBM3	51	62.791	ENSCATG00000038524	-	52	64.634	Cercocebus_atys
ENSIPUG00000007089	RBM3	51	63.953	ENSCATG00000029986	-	80	62.500	Cercocebus_atys
ENSIPUG00000007089	RBM3	60	62.376	ENSCLAG00000002908	RBM3	52	67.073	Chinchilla_lanigera
ENSIPUG00000007089	RBM3	51	63.953	ENSCSAG00000013242	RBM3	52	65.854	Chlorocebus_sabaeus
ENSIPUG00000007089	RBM3	51	61.628	ENSCHOG00000007642	RBM3	53	63.415	Choloepus_hoffmanni
ENSIPUG00000007089	RBM3	98	50.877	ENSCPBG00000021859	RBM3	53	64.634	Chrysemys_picta_bellii
ENSIPUG00000007089	RBM3	51	51.765	ENSCANG00000031890	-	54	51.220	Colobus_angolensis_palliatus
ENSIPUG00000007089	RBM3	51	63.953	ENSCANG00000037907	-	80	62.500	Colobus_angolensis_palliatus
ENSIPUG00000007089	RBM3	51	62.791	ENSCANG00000014668	-	52	64.634	Colobus_angolensis_palliatus
ENSIPUG00000007089	RBM3	99	61.765	ENSCANG00000037000	CIRBP	51	78.049	Colobus_angolensis_palliatus
ENSIPUG00000007089	RBM3	54	63.736	ENSCGRG00001018909	Rbm3	53	67.073	Cricetulus_griseus_chok1gshd
ENSIPUG00000007089	RBM3	54	63.736	ENSCGRG00000014636	Rbm3	53	67.073	Cricetulus_griseus_crigri
ENSIPUG00000007089	RBM3	51	63.953	ENSDNOG00000032565	-	53	65.854	Dasypus_novemcinctus
ENSIPUG00000007089	RBM3	61	52.941	ENSDNOG00000033435	-	52	56.627	Dasypus_novemcinctus
ENSIPUG00000007089	RBM3	99	50.296	ENSDNOG00000049801	-	51	65.854	Dasypus_novemcinctus
ENSIPUG00000007089	RBM3	82	44.444	ENSDNOG00000043650	-	54	46.988	Dasypus_novemcinctus
ENSIPUG00000007089	RBM3	63	50.476	ENSDNOG00000040058	-	51	55.422	Dasypus_novemcinctus
ENSIPUG00000007089	RBM3	50	65.476	ENSDORG00000000182	Rbm3	52	67.073	Dipodomys_ordii
ENSIPUG00000007089	RBM3	98	46.243	ENSEASG00005008251	RBM3	59	55.556	Equus_asinus_asinus
ENSIPUG00000007089	RBM3	51	47.674	ENSEASG00005023389	-	69	48.780	Equus_asinus_asinus
ENSIPUG00000007089	RBM3	98	51.515	ENSECAG00000024257	RBM3	80	63.889	Equus_caballus
ENSIPUG00000007089	RBM3	50	45.238	ENSECAG00000002141	-	91	47.436	Equus_caballus
ENSIPUG00000007089	RBM3	54	63.736	ENSFCAG00000002245	RBM3	51	67.073	Felis_catus
ENSIPUG00000007089	RBM3	72	50.833	ENSFCAG00000021952	-	92	51.220	Felis_catus
ENSIPUG00000007089	RBM3	99	55.882	ENSFALG00000014000	CIRBP	55	78.049	Ficedula_albicollis
ENSIPUG00000007089	RBM3	60	62.376	ENSFDAG00000007909	RBM3	52	67.073	Fukomys_damarensis
ENSIPUG00000007089	RBM3	51	63.953	ENSGGOG00000005864	RBM3	80	62.500	Gorilla_gorilla
ENSIPUG00000007089	RBM3	98	53.374	ENSHGLG00000006552	RBM3	53	67.073	Heterocephalus_glaber_female
ENSIPUG00000007089	RBM3	72	52.500	ENSHGLG00000013635	-	52	59.756	Heterocephalus_glaber_female
ENSIPUG00000007089	RBM3	68	58.407	ENSHGLG00000010919	-	59	65.854	Heterocephalus_glaber_female
ENSIPUG00000007089	RBM3	72	52.500	ENSHGLG00100015330	-	52	59.756	Heterocephalus_glaber_male
ENSIPUG00000007089	RBM3	50	65.476	ENSHGLG00100017487	-	52	67.073	Heterocephalus_glaber_male
ENSIPUG00000007089	RBM3	68	58.407	ENSHGLG00100014556	-	59	65.854	Heterocephalus_glaber_male
ENSIPUG00000007089	RBM3	54	63.736	ENSSTOG00000027493	-	53	67.073	Ictidomys_tridecemlineatus
ENSIPUG00000007089	RBM3	98	52.761	ENSJJAG00000012962	-	53	67.073	Jaculus_jaculus
ENSIPUG00000007089	RBM3	96	54.217	ENSLACG00000014490	-	50	74.699	Latimeria_chalumnae
ENSIPUG00000007089	RBM3	50	75.904	ENSLOCG00000000112	-	69	75.904	Lepisosteus_oculatus
ENSIPUG00000007089	RBM3	53	72.527	ENSLOCG00000005031	-	58	75.294	Lepisosteus_oculatus
ENSIPUG00000007089	RBM3	98	49.419	ENSLAFG00000007003	-	53	67.073	Loxodonta_africana
ENSIPUG00000007089	RBM3	97	43.293	ENSLAFG00000029211	-	51	52.439	Loxodonta_africana
ENSIPUG00000007089	RBM3	50	63.095	ENSMFAG00000003836	-	61	64.634	Macaca_fascicularis
ENSIPUG00000007089	RBM3	99	64.327	ENSMFAG00000034048	CIRBP	51	78.049	Macaca_fascicularis
ENSIPUG00000007089	RBM3	51	63.953	ENSMFAG00000003694	RBM3	80	62.500	Macaca_fascicularis
ENSIPUG00000007089	RBM3	50	63.095	ENSMMUG00000037648	-	52	64.634	Macaca_mulatta
ENSIPUG00000007089	RBM3	99	61.765	ENSMMUG00000022101	CIRBP	94	83.333	Macaca_mulatta
ENSIPUG00000007089	RBM3	50	63.095	ENSMNEG00000000984	-	52	64.634	Macaca_nemestrina
ENSIPUG00000007089	RBM3	51	63.953	ENSMNEG00000042115	-	80	62.500	Macaca_nemestrina
ENSIPUG00000007089	RBM3	51	63.953	ENSMLEG00000041745	-	80	62.500	Mandrillus_leucophaeus
ENSIPUG00000007089	RBM3	54	63.736	ENSMLEG00000027951	-	52	64.634	Mandrillus_leucophaeus
ENSIPUG00000007089	RBM3	51	61.628	ENSMAUG00000008646	-	62	63.415	Mesocricetus_auratus
ENSIPUG00000007089	RBM3	54	63.736	ENSMAUG00000016488	-	53	67.073	Mesocricetus_auratus
ENSIPUG00000007089	RBM3	77	46.565	ENSMICG00000045835	-	59	51.220	Microcebus_murinus
ENSIPUG00000007089	RBM3	51	65.116	ENSMICG00000047440	-	52	67.073	Microcebus_murinus
ENSIPUG00000007089	RBM3	56	62.766	ENSMICG00000028982	-	83	62.500	Microcebus_murinus
ENSIPUG00000007089	RBM3	54	63.736	ENSMOCG00000001511	Rbm3	53	67.073	Microtus_ochrogaster
ENSIPUG00000007089	RBM3	56	59.794	MGP_CAROLIEiJ_G0032914	-	80	63.889	Mus_caroli
ENSIPUG00000007089	RBM3	99	60.588	MGP_CAROLIEiJ_G0015568	Cirbp	76	76.829	Mus_caroli
ENSIPUG00000007089	RBM3	50	65.476	ENSMUSG00000031167	Rbm3	80	63.889	Mus_musculus
ENSIPUG00000007089	RBM3	99	60.588	ENSMUSG00000045193	Cirbp	76	76.829	Mus_musculus
ENSIPUG00000007089	RBM3	99	60.588	MGP_PahariEiJ_G0030981	Cirbp	76	76.829	Mus_pahari
ENSIPUG00000007089	RBM3	50	65.476	MGP_PahariEiJ_G0031463	Rbm3	80	63.889	Mus_pahari
ENSIPUG00000007089	RBM3	50	65.476	MGP_SPRETEiJ_G0034063	Rbm3	80	63.889	Mus_spretus
ENSIPUG00000007089	RBM3	99	60.588	MGP_SPRETEiJ_G0016386	Cirbp	76	76.829	Mus_spretus
ENSIPUG00000007089	RBM3	54	63.736	ENSMPUG00000013632	RBM3	53	67.073	Mustela_putorius_furo
ENSIPUG00000007089	RBM3	50	65.476	ENSMLUG00000003996	RBM3	51	67.073	Myotis_lucifugus
ENSIPUG00000007089	RBM3	54	63.736	ENSNGAG00000012951	Rbm3	53	67.073	Nannospalax_galili
ENSIPUG00000007089	RBM3	51	63.953	ENSNLEG00000028027	-	80	62.500	Nomascus_leucogenys
ENSIPUG00000007089	RBM3	98	46.707	ENSNLEG00000031601	-	56	56.627	Nomascus_leucogenys
ENSIPUG00000007089	RBM3	86	62.937	ENSNLEG00000028393	-	83	60.156	Nomascus_leucogenys
ENSIPUG00000007089	RBM3	51	61.628	ENSNLEG00000019350	-	52	63.415	Nomascus_leucogenys
ENSIPUG00000007089	RBM3	55	59.783	ENSODEG00000019976	-	52	62.195	Octodon_degus
ENSIPUG00000007089	RBM3	69	56.034	ENSODEG00000019283	-	52	62.195	Octodon_degus
ENSIPUG00000007089	RBM3	51	61.628	ENSODEG00000019234	-	53	63.415	Octodon_degus
ENSIPUG00000007089	RBM3	60	62.376	ENSODEG00000020479	-	52	67.073	Octodon_degus
ENSIPUG00000007089	RBM3	55	44.565	ENSOCUG00000027309	-	55	45.783	Oryctolagus_cuniculus
ENSIPUG00000007089	RBM3	99	52.410	ENSOCUG00000002271	RBM3	51	68.293	Oryctolagus_cuniculus
ENSIPUG00000007089	RBM3	98	49.419	ENSOGAG00000026654	RBM3	53	67.073	Otolemur_garnettii
ENSIPUG00000007089	RBM3	54	61.538	ENSOARG00000012250	RBM3	50	64.634	Ovis_aries
ENSIPUG00000007089	RBM3	51	63.953	ENSPPAG00000034179	RBM3	80	62.500	Pan_paniscus
ENSIPUG00000007089	RBM3	72	48.333	ENSPPAG00000036405	-	71	53.659	Pan_paniscus
ENSIPUG00000007089	RBM3	51	53.846	ENSPPRG00000011438	-	66	58.442	Panthera_pardus
ENSIPUG00000007089	RBM3	54	63.736	ENSPPRG00000013315	RBM3	51	67.073	Panthera_pardus
ENSIPUG00000007089	RBM3	72	50.000	ENSPTIG00000003747	-	50	53.659	Panthera_tigris_altaica
ENSIPUG00000007089	RBM3	54	63.736	ENSPTIG00000017702	RBM3	51	67.073	Panthera_tigris_altaica
ENSIPUG00000007089	RBM3	51	63.953	ENSPTRG00000021864	RBM3	80	62.500	Pan_troglodytes
ENSIPUG00000007089	RBM3	72	48.333	ENSPTRG00000044048	-	71	53.659	Pan_troglodytes
ENSIPUG00000007089	RBM3	51	62.791	ENSPANG00000005561	-	57	64.634	Papio_anubis
ENSIPUG00000007089	RBM3	51	63.953	ENSPANG00000034727	-	80	62.500	Papio_anubis
ENSIPUG00000007089	RBM3	54	62.637	ENSPANG00000010520	-	55	65.854	Papio_anubis
ENSIPUG00000007089	RBM3	50	83.133	ENSPKIG00000024430	CIRBP	65	83.133	Paramormyrops_kingsleyae
ENSIPUG00000007089	RBM3	54	63.736	ENSPEMG00000012411	Rbm3	53	67.073	Peromyscus_maniculatus_bairdii
ENSIPUG00000007089	RBM3	51	63.953	ENSPPYG00000020314	RBM3	80	62.500	Pongo_abelii
ENSIPUG00000007089	RBM3	51	52.941	ENSPPYG00000000510	-	84	53.659	Pongo_abelii
ENSIPUG00000007089	RBM3	51	65.116	ENSPCOG00000014346	-	52	67.073	Propithecus_coquereli
ENSIPUG00000007089	RBM3	64	57.944	ENSPCOG00000013194	-	69	61.644	Propithecus_coquereli
ENSIPUG00000007089	RBM3	54	63.736	ENSPVAG00000015630	RBM3	53	67.073	Pteropus_vampyrus
ENSIPUG00000007089	RBM3	54	63.736	ENSRNOG00000005387	Rbm3	53	67.073	Rattus_norvegicus
ENSIPUG00000007089	RBM3	99	61.628	ENSRBIG00000031290	CIRBP	51	78.049	Rhinopithecus_bieti
ENSIPUG00000007089	RBM3	51	63.953	ENSRBIG00000040498	RBM3	80	62.500	Rhinopithecus_bieti
ENSIPUG00000007089	RBM3	51	51.765	ENSRROG00000035651	-	51	51.220	Rhinopithecus_roxellana
ENSIPUG00000007089	RBM3	99	61.765	ENSRROG00000022862	CIRBP	51	78.049	Rhinopithecus_roxellana
ENSIPUG00000007089	RBM3	51	63.953	ENSRROG00000034767	RBM3	80	62.500	Rhinopithecus_roxellana
ENSIPUG00000007089	RBM3	54	62.637	ENSSBOG00000005354	-	59	65.854	Saimiri_boliviensis_boliviensis
ENSIPUG00000007089	RBM3	76	50.394	ENSSBOG00000035691	-	71	61.111	Saimiri_boliviensis_boliviensis
ENSIPUG00000007089	RBM3	99	58.235	ENSSSCG00000013427	CIRBP	51	76.471	Sus_scrofa
ENSIPUG00000007089	RBM3	51	63.953	ENSSSCG00000021591	-	80	62.500	Sus_scrofa
ENSIPUG00000007089	RBM3	71	48.739	ENSSSCG00000005430	-	51	59.211	Sus_scrofa
ENSIPUG00000007089	RBM3	51	55.814	ENSSSCG00000030003	-	53	57.317	Sus_scrofa
ENSIPUG00000007089	RBM3	54	62.637	ENSTTRG00000008587	RBM3	53	65.854	Tursiops_truncatus
ENSIPUG00000007089	RBM3	54	63.736	ENSUAMG00000013289	RBM3	53	67.073	Ursus_americanus
ENSIPUG00000007089	RBM3	54	63.736	ENSUMAG00000007785	RBM3	53	67.073	Ursus_maritimus
ENSIPUG00000007089	RBM3	54	63.736	ENSVVUG00000017670	RBM3	80	63.889	Vulpes_vulpes