EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000007275 (Gene tree)
Gene ID: 108274938
Gene Symbol: ncbp1
Alias: CBP80|NCBP|Sto1
Full Name: nuclear cap binding protein subunit 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 17926 bases
Position: chr14:18014449-18032374
Accession: 108274938
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000010752	MIF4G_like	PF09088.11	4e-37	1	1
ENSIPUP00000010752	MIF4G_like_2	PF09090.11	3.7e-86	1	1
ENSIPUP00000010752	MIF4G	PF02854.19	5.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000011208	-	2685	XM_017485367	ENSIPUP00000010752	796 (aa)	XP_017340856	W6A2M7

Gene Model

Click here to download ENSIPUG00000007275's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007275	ncbp1	99	81.887	ENSG00000136937	NCBP1	99	82.264	Homo_sapiens
ENSIPUG00000007275	ncbp1	100	90.955	ENSAPOG00000008002	NCBP1	100	90.955	Acanthochromis_polyacanthus
ENSIPUG00000007275	ncbp1	99	81.932	ENSAMEG00000004763	NCBP1	99	82.309	Ailuropoda_melanoleuca
ENSIPUG00000007275	ncbp1	100	89.573	ENSACIG00000000274	NCBP1	100	89.573	Amphilophus_citrinellus
ENSIPUG00000007275	ncbp1	100	90.704	ENSAOCG00000021148	NCBP1	100	90.704	Amphiprion_ocellaris
ENSIPUG00000007275	ncbp1	100	90.704	ENSAPEG00000001701	NCBP1	100	90.704	Amphiprion_percula
ENSIPUG00000007275	ncbp1	100	90.578	ENSATEG00000006929	NCBP1	100	90.578	Anabas_testudineus
ENSIPUG00000007275	ncbp1	95	82.260	ENSAPLG00000016318	NCBP1	99	82.523	Anas_platyrhynchos
ENSIPUG00000007275	ncbp1	99	82.125	ENSACAG00000004409	NCBP1	87	82.250	Anolis_carolinensis
ENSIPUG00000007275	ncbp1	99	79.874	ENSANAG00000025744	NCBP1	99	81.543	Aotus_nancymaae
ENSIPUG00000007275	ncbp1	100	89.573	ENSACLG00000014812	NCBP1	100	89.573	Astatotilapia_calliptera
ENSIPUG00000007275	ncbp1	100	94.103	ENSAMXG00000016364	NCBP1	100	94.103	Astyanax_mexicanus
ENSIPUG00000007275	ncbp1	99	82.013	ENSBTAG00000009732	NCBP1	99	86.707	Bos_taurus
ENSIPUG00000007275	ncbp1	100	35.985	WBGene00018156	ncbp-1	100	35.618	Caenorhabditis_elegans
ENSIPUG00000007275	ncbp1	99	82.013	ENSCJAG00000010840	NCBP1	99	85.022	Callithrix_jacchus
ENSIPUG00000007275	ncbp1	99	82.138	ENSCAFG00000002445	NCBP1	99	82.516	Canis_familiaris
ENSIPUG00000007275	ncbp1	98	81.865	ENSCAFG00020017997	NCBP1	96	87.065	Canis_lupus_dingo
ENSIPUG00000007275	ncbp1	99	82.013	ENSCHIG00000020139	NCBP1	99	82.390	Capra_hircus
ENSIPUG00000007275	ncbp1	51	86.567	ENSTSYG00000011914	NCBP1	98	85.893	Carlito_syrichta
ENSIPUG00000007275	ncbp1	81	74.189	ENSCAPG00000014252	NCBP1	90	74.189	Cavia_aperea
ENSIPUG00000007275	ncbp1	95	81.135	ENSCPOG00000012573	NCBP1	98	81.530	Cavia_porcellus
ENSIPUG00000007275	ncbp1	99	81.887	ENSCCAG00000032297	NCBP1	99	82.264	Cebus_capucinus
ENSIPUG00000007275	ncbp1	99	81.887	ENSCATG00000010052	NCBP1	99	82.264	Cercocebus_atys
ENSIPUG00000007275	ncbp1	99	81.887	ENSCLAG00000014339	NCBP1	99	82.264	Chinchilla_lanigera
ENSIPUG00000007275	ncbp1	99	81.887	ENSCSAG00000010929	NCBP1	99	82.264	Chlorocebus_sabaeus
ENSIPUG00000007275	ncbp1	89	82.075	ENSCHOG00000010332	NCBP1	91	77.391	Choloepus_hoffmanni
ENSIPUG00000007275	ncbp1	99	81.006	ENSCPBG00000024344	NCBP1	99	82.920	Chrysemys_picta_bellii
ENSIPUG00000007275	ncbp1	99	54.591	ENSCING00000008990	-	99	54.591	Ciona_intestinalis
ENSIPUG00000007275	ncbp1	99	54.057	ENSCSAVG00000005300	-	99	55.897	Ciona_savignyi
ENSIPUG00000007275	ncbp1	99	81.887	ENSCANG00000036913	NCBP1	99	82.264	Colobus_angolensis_palliatus
ENSIPUG00000007275	ncbp1	99	81.384	ENSCGRG00001015771	Ncbp1	99	81.761	Cricetulus_griseus_chok1gshd
ENSIPUG00000007275	ncbp1	99	81.274	ENSCGRG00000010311	Ncbp1	99	81.656	Cricetulus_griseus_crigri
ENSIPUG00000007275	ncbp1	100	89.698	ENSCSEG00000012377	NCBP1	100	89.698	Cynoglossus_semilaevis
ENSIPUG00000007275	ncbp1	100	89.711	ENSCVAG00000008795	NCBP1	100	89.711	Cyprinodon_variegatus
ENSIPUG00000007275	ncbp1	99	81.258	ENSDNOG00000006885	NCBP1	99	81.635	Dasypus_novemcinctus
ENSIPUG00000007275	ncbp1	99	78.098	ENSDORG00000013652	Ncbp1	99	78.473	Dipodomys_ordii
ENSIPUG00000007275	ncbp1	99	57.071	FBgn0022942	Cbp80	99	57.125	Drosophila_melanogaster
ENSIPUG00000007275	ncbp1	82	34.462	FBgn0038887	CG7907	87	34.218	Drosophila_melanogaster
ENSIPUG00000007275	ncbp1	89	77.538	ENSETEG00000009705	NCBP1	89	77.538	Echinops_telfairi
ENSIPUG00000007275	ncbp1	99	72.613	ENSEBUG00000008386	NCBP1	99	72.362	Eptatretus_burgeri
ENSIPUG00000007275	ncbp1	99	81.635	ENSEASG00005022795	NCBP1	99	82.013	Equus_asinus_asinus
ENSIPUG00000007275	ncbp1	99	81.761	ENSECAG00000013847	NCBP1	99	82.138	Equus_caballus
ENSIPUG00000007275	ncbp1	95	77.573	ENSEEUG00000015973	NCBP1	99	77.968	Erinaceus_europaeus
ENSIPUG00000007275	ncbp1	100	91.206	ENSELUG00000022519	NCBP1	100	91.206	Esox_lucius
ENSIPUG00000007275	ncbp1	99	82.013	ENSFCAG00000001206	NCBP1	99	82.390	Felis_catus
ENSIPUG00000007275	ncbp1	98	83.333	ENSFALG00000001193	NCBP1	99	83.333	Ficedula_albicollis
ENSIPUG00000007275	ncbp1	99	81.635	ENSFDAG00000010864	NCBP1	99	82.013	Fukomys_damarensis
ENSIPUG00000007275	ncbp1	100	89.460	ENSFHEG00000000655	NCBP1	100	89.460	Fundulus_heteroclitus
ENSIPUG00000007275	ncbp1	100	87.940	ENSGMOG00000008653	NCBP1	99	87.940	Gadus_morhua
ENSIPUG00000007275	ncbp1	98	83.269	ENSGALG00000002087	NCBP1	99	83.187	Gallus_gallus
ENSIPUG00000007275	ncbp1	100	89.837	ENSGAFG00000017787	NCBP1	100	89.837	Gambusia_affinis
ENSIPUG00000007275	ncbp1	100	88.596	ENSGACG00000016772	NCBP1	99	88.596	Gasterosteus_aculeatus
ENSIPUG00000007275	ncbp1	99	83.145	ENSGAGG00000019483	NCBP1	99	83.145	Gopherus_agassizii
ENSIPUG00000007275	ncbp1	99	81.887	ENSGGOG00000001376	NCBP1	99	82.264	Gorilla_gorilla
ENSIPUG00000007275	ncbp1	100	89.573	ENSHBUG00000020843	NCBP1	100	89.573	Haplochromis_burtoni
ENSIPUG00000007275	ncbp1	99	81.887	ENSHGLG00000001882	NCBP1	99	82.264	Heterocephalus_glaber_female
ENSIPUG00000007275	ncbp1	99	71.411	ENSHGLG00000018112	-	99	71.411	Heterocephalus_glaber_female
ENSIPUG00000007275	ncbp1	99	81.887	ENSHGLG00100013014	NCBP1	99	82.264	Heterocephalus_glaber_male
ENSIPUG00000007275	ncbp1	99	71.161	ENSHGLG00100017373	-	99	71.161	Heterocephalus_glaber_male
ENSIPUG00000007275	ncbp1	74	83.980	ENSHCOG00000000204	NCBP1	87	83.980	Hippocampus_comes
ENSIPUG00000007275	ncbp1	99	82.013	ENSSTOG00000002695	NCBP1	99	82.390	Ictidomys_tridecemlineatus
ENSIPUG00000007275	ncbp1	100	89.070	ENSKMAG00000003594	NCBP1	100	89.070	Kryptolebias_marmoratus
ENSIPUG00000007275	ncbp1	100	88.848	ENSLBEG00000011661	NCBP1	100	88.848	Labrus_bergylta
ENSIPUG00000007275	ncbp1	99	77.584	ENSLACG00000013955	NCBP1	99	77.584	Latimeria_chalumnae
ENSIPUG00000007275	ncbp1	99	78.607	ENSLOCG00000009579	NCBP1	99	78.607	Lepisosteus_oculatus
ENSIPUG00000007275	ncbp1	99	81.887	ENSLAFG00000005999	NCBP1	99	82.264	Loxodonta_africana
ENSIPUG00000007275	ncbp1	99	81.887	ENSMFAG00000030994	NCBP1	99	82.264	Macaca_fascicularis
ENSIPUG00000007275	ncbp1	98	81.633	ENSMMUG00000012281	NCBP1	99	82.037	Macaca_mulatta
ENSIPUG00000007275	ncbp1	99	81.887	ENSMNEG00000042790	NCBP1	99	82.264	Macaca_nemestrina
ENSIPUG00000007275	ncbp1	99	81.887	ENSMLEG00000030374	NCBP1	99	82.264	Mandrillus_leucophaeus
ENSIPUG00000007275	ncbp1	100	89.950	ENSMAMG00000014806	NCBP1	100	89.950	Mastacembelus_armatus
ENSIPUG00000007275	ncbp1	100	89.573	ENSMZEG00005003469	NCBP1	100	89.573	Maylandia_zebra
ENSIPUG00000007275	ncbp1	97	88.000	ENSMZEG00005009290	-	100	88.000	Maylandia_zebra
ENSIPUG00000007275	ncbp1	99	80.784	ENSMAUG00000020583	Ncbp1	99	81.163	Mesocricetus_auratus
ENSIPUG00000007275	ncbp1	99	81.509	ENSMICG00000012682	NCBP1	99	81.887	Microcebus_murinus
ENSIPUG00000007275	ncbp1	99	81.258	ENSMOCG00000015818	Ncbp1	99	81.635	Microtus_ochrogaster
ENSIPUG00000007275	ncbp1	91	88.227	ENSMMOG00000002610	NCBP1	100	88.227	Mola_mola
ENSIPUG00000007275	ncbp1	99	81.258	ENSMODG00000003202	NCBP1	99	81.384	Monodelphis_domestica
ENSIPUG00000007275	ncbp1	100	89.950	ENSMALG00000003547	NCBP1	100	89.950	Monopterus_albus
ENSIPUG00000007275	ncbp1	99	81.509	MGP_CAROLIEiJ_G0025982	Ncbp1	99	81.887	Mus_caroli
ENSIPUG00000007275	ncbp1	99	81.509	ENSMUSG00000028330	Ncbp1	99	81.887	Mus_musculus
ENSIPUG00000007275	ncbp1	99	81.509	MGP_PahariEiJ_G0028318	Ncbp1	99	81.887	Mus_pahari
ENSIPUG00000007275	ncbp1	99	81.509	MGP_SPRETEiJ_G0026945	Ncbp1	99	81.887	Mus_spretus
ENSIPUG00000007275	ncbp1	99	82.013	ENSMPUG00000006399	NCBP1	99	82.390	Mustela_putorius_furo
ENSIPUG00000007275	ncbp1	98	80.612	ENSMLUG00000015201	NCBP1	99	80.995	Myotis_lucifugus
ENSIPUG00000007275	ncbp1	99	82.013	ENSNGAG00000014101	Ncbp1	99	82.013	Nannospalax_galili
ENSIPUG00000007275	ncbp1	74	92.952	ENSNBRG00000014674	NCBP1	94	92.952	Neolamprologus_brichardi
ENSIPUG00000007275	ncbp1	99	81.887	ENSNLEG00000016909	NCBP1	99	82.264	Nomascus_leucogenys
ENSIPUG00000007275	ncbp1	89	80.376	ENSMEUG00000010672	NCBP1	90	80.376	Notamacropus_eugenii
ENSIPUG00000007275	ncbp1	84	74.454	ENSOPRG00000002144	-	88	74.958	Ochotona_princeps
ENSIPUG00000007275	ncbp1	99	81.761	ENSODEG00000003232	NCBP1	99	82.138	Octodon_degus
ENSIPUG00000007275	ncbp1	100	89.322	ENSONIG00000001502	NCBP1	100	89.322	Oreochromis_niloticus
ENSIPUG00000007275	ncbp1	78	84.430	ENSOANG00000001918	NCBP1	100	84.430	Ornithorhynchus_anatinus
ENSIPUG00000007275	ncbp1	98	81.434	ENSOCUG00000013853	NCBP1	97	81.818	Oryctolagus_cuniculus
ENSIPUG00000007275	ncbp1	100	88.736	ENSORLG00000011008	NCBP1	100	88.736	Oryzias_latipes
ENSIPUG00000007275	ncbp1	100	88.986	ENSORLG00020017455	NCBP1	100	88.986	Oryzias_latipes_hni
ENSIPUG00000007275	ncbp1	100	88.861	ENSORLG00015012127	NCBP1	100	88.861	Oryzias_latipes_hsok
ENSIPUG00000007275	ncbp1	100	88.986	ENSOMEG00000020698	NCBP1	100	88.986	Oryzias_melastigma
ENSIPUG00000007275	ncbp1	99	81.807	ENSOGAG00000013888	NCBP1	99	82.183	Otolemur_garnettii
ENSIPUG00000007275	ncbp1	99	82.013	ENSOARG00000011233	NCBP1	99	82.390	Ovis_aries
ENSIPUG00000007275	ncbp1	99	81.887	ENSPPAG00000026462	NCBP1	99	82.264	Pan_paniscus
ENSIPUG00000007275	ncbp1	99	82.138	ENSPPRG00000022574	NCBP1	99	82.516	Panthera_pardus
ENSIPUG00000007275	ncbp1	99	82.138	ENSPTIG00000018507	NCBP1	99	82.516	Panthera_tigris_altaica
ENSIPUG00000007275	ncbp1	99	81.887	ENSPTRG00000021167	NCBP1	99	82.264	Pan_troglodytes
ENSIPUG00000007275	ncbp1	99	81.887	ENSPANG00000025591	NCBP1	99	82.264	Papio_anubis
ENSIPUG00000007275	ncbp1	99	88.679	ENSPKIG00000015861	NCBP1	99	88.679	Paramormyrops_kingsleyae
ENSIPUG00000007275	ncbp1	64	82.031	ENSPSIG00000009558	NCBP1	99	82.031	Pelodiscus_sinensis
ENSIPUG00000007275	ncbp1	100	85.106	ENSPMGG00000020476	NCBP1	100	85.106	Periophthalmus_magnuspinnatus
ENSIPUG00000007275	ncbp1	99	81.006	ENSPEMG00000020105	Ncbp1	99	81.384	Peromyscus_maniculatus_bairdii
ENSIPUG00000007275	ncbp1	87	80.652	ENSPMAG00000005533	NCBP1	99	67.955	Petromyzon_marinus
ENSIPUG00000007275	ncbp1	99	81.006	ENSPCIG00000015800	NCBP1	99	82.819	Phascolarctos_cinereus
ENSIPUG00000007275	ncbp1	100	89.612	ENSPFOG00000004158	NCBP1	100	89.612	Poecilia_formosa
ENSIPUG00000007275	ncbp1	100	89.837	ENSPLAG00000020002	NCBP1	100	89.837	Poecilia_latipinna
ENSIPUG00000007275	ncbp1	100	89.837	ENSPMEG00000019821	NCBP1	100	89.837	Poecilia_mexicana
ENSIPUG00000007275	ncbp1	100	89.586	ENSPREG00000006035	NCBP1	100	89.586	Poecilia_reticulata
ENSIPUG00000007275	ncbp1	99	81.887	ENSPPYG00000019426	NCBP1	99	82.264	Pongo_abelii
ENSIPUG00000007275	ncbp1	90	79.154	ENSPCAG00000009943	NCBP1	90	79.154	Procavia_capensis
ENSIPUG00000007275	ncbp1	82	85.526	ENSPCOG00000020024	NCBP1	98	85.526	Propithecus_coquereli
ENSIPUG00000007275	ncbp1	99	81.761	ENSPVAG00000005924	NCBP1	99	82.138	Pteropus_vampyrus
ENSIPUG00000007275	ncbp1	91	88.072	ENSPNYG00000002140	NCBP1	99	88.072	Pundamilia_nyererei
ENSIPUG00000007275	ncbp1	100	93.726	ENSPNAG00000027753	NCBP1	100	93.726	Pygocentrus_nattereri
ENSIPUG00000007275	ncbp1	99	81.509	ENSRNOG00000023605	Ncbp1	99	81.887	Rattus_norvegicus
ENSIPUG00000007275	ncbp1	99	81.887	ENSRBIG00000043175	NCBP1	99	82.264	Rhinopithecus_bieti
ENSIPUG00000007275	ncbp1	99	81.887	ENSRROG00000029767	NCBP1	99	82.264	Rhinopithecus_roxellana
ENSIPUG00000007275	ncbp1	99	81.887	ENSSBOG00000019378	NCBP1	98	86.098	Saimiri_boliviensis_boliviensis
ENSIPUG00000007275	ncbp1	70	77.947	ENSSHAG00000015882	NCBP1	72	78.599	Sarcophilus_harrisii
ENSIPUG00000007275	ncbp1	98	87.755	ENSSFOG00015001872	NCBP1	99	86.918	Scleropages_formosus
ENSIPUG00000007275	ncbp1	100	89.447	ENSSMAG00000007463	NCBP1	100	89.447	Scophthalmus_maximus
ENSIPUG00000007275	ncbp1	100	89.698	ENSSDUG00000007019	NCBP1	100	89.863	Seriola_dumerili
ENSIPUG00000007275	ncbp1	100	90.201	ENSSLDG00000021924	NCBP1	100	90.201	Seriola_lalandi_dorsalis
ENSIPUG00000007275	ncbp1	85	70.842	ENSSARG00000007274	NCBP1	86	71.490	Sorex_araneus
ENSIPUG00000007275	ncbp1	99	77.261	ENSSPUG00000008609	NCBP1	99	77.387	Sphenodon_punctatus
ENSIPUG00000007275	ncbp1	100	90.829	ENSSPAG00000012550	NCBP1	100	90.829	Stegastes_partitus
ENSIPUG00000007275	ncbp1	99	81.887	ENSSSCG00000005366	NCBP1	99	82.264	Sus_scrofa
ENSIPUG00000007275	ncbp1	99	78.365	ENSTGUG00000001472	NCBP1	99	78.365	Taeniopygia_guttata
ENSIPUG00000007275	ncbp1	100	89.070	ENSTRUG00000005287	NCBP1	100	89.070	Takifugu_rubripes
ENSIPUG00000007275	ncbp1	99	79.371	ENSTBEG00000004035	NCBP1	99	79.748	Tupaia_belangeri
ENSIPUG00000007275	ncbp1	88	83.744	ENSTTRG00000000507	NCBP1	88	83.744	Tursiops_truncatus
ENSIPUG00000007275	ncbp1	99	82.013	ENSUAMG00000005471	NCBP1	99	82.390	Ursus_americanus
ENSIPUG00000007275	ncbp1	97	79.587	ENSUMAG00000011865	NCBP1	99	81.831	Ursus_maritimus
ENSIPUG00000007275	ncbp1	99	78.365	ENSVPAG00000010537	NCBP1	99	78.742	Vicugna_pacos
ENSIPUG00000007275	ncbp1	99	82.138	ENSVVUG00000019725	NCBP1	99	82.516	Vulpes_vulpes
ENSIPUG00000007275	ncbp1	99	78.994	ENSXETG00000010179	ncbp1	99	78.994	Xenopus_tropicalis
ENSIPUG00000007275	ncbp1	100	89.711	ENSXMAG00000018253	NCBP1	100	89.711	Xiphophorus_maculatus