EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000007432 (Gene tree)
Gene ID: 108264784
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 13001 bases
Position: chr4:27548265-27561265
Accession: 108264784
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000010985	PRP4	PF08799.11	3.4e-13	1	1
ENSIPUP00000010962	PRP4	PF08799.11	3.5e-13	1	1
ENSIPUP00000010985	Prp18	PF02840.15	2.4e-61	1	1
ENSIPUP00000010962	Prp18	PF02840.15	2.5e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000011450	-	3910	XM_017466649	ENSIPUP00000010985	353 (aa)	XP_017322138	W5UAP0
ENSIPUT00000011422	-	3937	-	ENSIPUP00000010962	362 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000007432's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007432's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007432	prpf18	100	82.720	ENSG00000165630	PRPF18	100	81.870	Homo_sapiens
ENSIPUG00000007432	prpf18	100	83.853	ENSAPOG00000024177	prpf18	100	83.853	Acanthochromis_polyacanthus
ENSIPUG00000007432	prpf18	100	82.436	ENSAMEG00000013591	-	100	81.586	Ailuropoda_melanoleuca
ENSIPUG00000007432	prpf18	100	83.569	ENSACIG00000001186	prpf18	100	82.720	Amphilophus_citrinellus
ENSIPUG00000007432	prpf18	98	83.815	ENSAOCG00000006572	prpf18	94	83.768	Amphiprion_ocellaris
ENSIPUG00000007432	prpf18	100	84.136	ENSAPEG00000004564	prpf18	100	84.136	Amphiprion_percula
ENSIPUG00000007432	prpf18	100	83.286	ENSATEG00000000303	prpf18	100	82.153	Anabas_testudineus
ENSIPUG00000007432	prpf18	99	83.143	ENSAPLG00000003387	-	99	81.429	Anas_platyrhynchos
ENSIPUG00000007432	prpf18	100	83.569	ENSACAG00000000818	-	100	83.569	Anolis_carolinensis
ENSIPUG00000007432	prpf18	100	82.436	ENSANAG00000037445	-	100	82.153	Aotus_nancymaae
ENSIPUG00000007432	prpf18	100	83.853	ENSACLG00000026296	prpf18	100	83.003	Astatotilapia_calliptera
ENSIPUG00000007432	prpf18	100	88.669	ENSAMXG00000012848	prpf18	100	87.569	Astyanax_mexicanus
ENSIPUG00000007432	prpf18	100	82.436	ENSBTAG00000017244	PRPF18	100	81.586	Bos_taurus
ENSIPUG00000007432	prpf18	98	38.950	WBGene00009320	F32B6.3	97	38.268	Caenorhabditis_elegans
ENSIPUG00000007432	prpf18	100	82.436	ENSCJAG00000009432	-	100	82.153	Callithrix_jacchus
ENSIPUG00000007432	prpf18	100	82.436	ENSCAFG00000004735	-	100	81.586	Canis_familiaris
ENSIPUG00000007432	prpf18	100	82.436	ENSCAFG00020007712	-	100	81.586	Canis_lupus_dingo
ENSIPUG00000007432	prpf18	100	82.436	ENSCHIG00000000499	-	100	81.586	Capra_hircus
ENSIPUG00000007432	prpf18	100	82.153	ENSTSYG00000003517	-	100	81.303	Carlito_syrichta
ENSIPUG00000007432	prpf18	100	83.003	ENSCPOG00000021069	-	100	82.153	Cavia_porcellus
ENSIPUG00000007432	prpf18	100	82.436	ENSCCAG00000036822	-	100	82.153	Cebus_capucinus
ENSIPUG00000007432	prpf18	100	72.521	ENSCATG00000016633	-	100	71.671	Cercocebus_atys
ENSIPUG00000007432	prpf18	100	82.720	ENSCLAG00000011770	-	100	81.870	Chinchilla_lanigera
ENSIPUG00000007432	prpf18	100	83.003	ENSCSAG00000013109	-	100	82.153	Chlorocebus_sabaeus
ENSIPUG00000007432	prpf18	100	79.564	ENSCPBG00000003100	-	100	79.564	Chrysemys_picta_bellii
ENSIPUG00000007432	prpf18	99	54.131	ENSCING00000020481	-	97	53.868	Ciona_intestinalis
ENSIPUG00000007432	prpf18	99	53.868	ENSCSAVG00000010546	-	98	53.824	Ciona_savignyi
ENSIPUG00000007432	prpf18	100	83.003	ENSCANG00000034900	-	100	82.153	Colobus_angolensis_palliatus
ENSIPUG00000007432	prpf18	100	82.436	ENSCGRG00001023665	Prpf18	100	81.870	Cricetulus_griseus_chok1gshd
ENSIPUG00000007432	prpf18	100	82.436	ENSCGRG00000014690	Prpf18	100	81.870	Cricetulus_griseus_crigri
ENSIPUG00000007432	prpf18	100	82.720	ENSCSEG00000005536	prpf18	99	82.720	Cynoglossus_semilaevis
ENSIPUG00000007432	prpf18	100	83.569	ENSCVAG00000012401	prpf18	100	83.003	Cyprinodon_variegatus
ENSIPUG00000007432	prpf18	100	86.969	ENSDARG00000058306	prpf18	100	86.402	Danio_rerio
ENSIPUG00000007432	prpf18	100	82.436	ENSDNOG00000035607	-	100	81.586	Dasypus_novemcinctus
ENSIPUG00000007432	prpf18	100	82.720	ENSDORG00000000858	Prpf18	100	81.870	Dipodomys_ordii
ENSIPUG00000007432	prpf18	99	50.857	FBgn0027784	Prp18	98	50.286	Drosophila_melanogaster
ENSIPUG00000007432	prpf18	100	74.221	ENSETEG00000015060	-	100	73.729	Echinops_telfairi
ENSIPUG00000007432	prpf18	100	66.572	ENSEBUG00000016502	prpf18	99	66.006	Eptatretus_burgeri
ENSIPUG00000007432	prpf18	100	82.720	ENSEASG00005019373	-	100	81.870	Equus_asinus_asinus
ENSIPUG00000007432	prpf18	100	82.720	ENSECAG00000006997	PRPF18	100	81.870	Equus_caballus
ENSIPUG00000007432	prpf18	93	50.459	ENSEEUG00000001171	-	100	49.541	Erinaceus_europaeus
ENSIPUG00000007432	prpf18	100	83.898	ENSELUG00000022190	prpf18	100	83.616	Esox_lucius
ENSIPUG00000007432	prpf18	100	82.720	ENSFCAG00000004436	-	100	81.870	Felis_catus
ENSIPUG00000007432	prpf18	93	82.263	ENSFALG00000001912	-	97	81.957	Ficedula_albicollis
ENSIPUG00000007432	prpf18	99	55.682	ENSFDAG00000010713	-	97	55.182	Fukomys_damarensis
ENSIPUG00000007432	prpf18	94	84.290	ENSFDAG00000014026	-	100	83.384	Fukomys_damarensis
ENSIPUG00000007432	prpf18	77	89.377	ENSFHEG00000020125	prpf18	98	89.139	Fundulus_heteroclitus
ENSIPUG00000007432	prpf18	99	80.398	ENSGMOG00000012210	prpf18	99	80.114	Gadus_morhua
ENSIPUG00000007432	prpf18	100	83.853	ENSGALG00000043593	-	100	82.720	Gallus_gallus
ENSIPUG00000007432	prpf18	100	82.436	ENSGAFG00000006034	prpf18	100	81.870	Gambusia_affinis
ENSIPUG00000007432	prpf18	100	80.737	ENSGACG00000012232	prpf18	100	80.453	Gasterosteus_aculeatus
ENSIPUG00000007432	prpf18	100	82.720	ENSGAGG00000016878	-	100	82.153	Gopherus_agassizii
ENSIPUG00000007432	prpf18	93	81.651	ENSGGOG00000025188	-	96	80.734	Gorilla_gorilla
ENSIPUG00000007432	prpf18	100	83.853	ENSHBUG00000010264	prpf18	100	83.003	Haplochromis_burtoni
ENSIPUG00000007432	prpf18	100	82.436	ENSHGLG00000018534	PRPF18	100	81.586	Heterocephalus_glaber_female
ENSIPUG00000007432	prpf18	94	84.290	ENSHGLG00100012161	-	98	83.384	Heterocephalus_glaber_male
ENSIPUG00000007432	prpf18	100	82.436	ENSHCOG00000015987	prpf18	100	82.436	Hippocampus_comes
ENSIPUG00000007432	prpf18	100	82.153	ENSSTOG00000008735	-	100	81.303	Ictidomys_tridecemlineatus
ENSIPUG00000007432	prpf18	100	82.720	ENSJJAG00000024041	-	100	81.870	Jaculus_jaculus
ENSIPUG00000007432	prpf18	100	59.887	ENSJJAG00000015191	-	100	59.887	Jaculus_jaculus
ENSIPUG00000007432	prpf18	100	83.286	ENSKMAG00000012124	prpf18	100	83.286	Kryptolebias_marmoratus
ENSIPUG00000007432	prpf18	96	81.065	ENSLBEG00000028466	prpf18	98	79.070	Labrus_bergylta
ENSIPUG00000007432	prpf18	100	82.720	ENSLACG00000009885	prpf18	100	83.003	Latimeria_chalumnae
ENSIPUG00000007432	prpf18	100	85.552	ENSLOCG00000016736	prpf18	100	84.703	Lepisosteus_oculatus
ENSIPUG00000007432	prpf18	100	82.720	ENSLAFG00000007753	-	100	81.870	Loxodonta_africana
ENSIPUG00000007432	prpf18	100	83.003	ENSMFAG00000000540	-	100	82.153	Macaca_fascicularis
ENSIPUG00000007432	prpf18	100	83.003	ENSMMUG00000015071	PRPF18	91	93.960	Macaca_mulatta
ENSIPUG00000007432	prpf18	100	83.003	ENSMNEG00000024679	-	100	82.153	Macaca_nemestrina
ENSIPUG00000007432	prpf18	100	67.989	ENSMLEG00000031715	-	100	67.139	Mandrillus_leucophaeus
ENSIPUG00000007432	prpf18	100	83.569	ENSMAMG00000006610	prpf18	100	83.003	Mastacembelus_armatus
ENSIPUG00000007432	prpf18	100	83.853	ENSMZEG00005019392	prpf18	100	83.003	Maylandia_zebra
ENSIPUG00000007432	prpf18	100	83.569	ENSMGAG00000005023	-	100	81.870	Meleagris_gallopavo
ENSIPUG00000007432	prpf18	100	83.286	ENSMICG00000006572	-	100	82.436	Microcebus_murinus
ENSIPUG00000007432	prpf18	100	82.720	ENSMOCG00000021468	Prpf18	100	81.870	Microtus_ochrogaster
ENSIPUG00000007432	prpf18	100	83.003	ENSMMOG00000013012	prpf18	100	82.153	Mola_mola
ENSIPUG00000007432	prpf18	96	79.412	ENSMODG00000016902	-	92	78.529	Monodelphis_domestica
ENSIPUG00000007432	prpf18	100	74.221	ENSMODG00000024043	-	100	73.938	Monodelphis_domestica
ENSIPUG00000007432	prpf18	100	76.487	ENSMALG00000005486	prpf18	100	76.204	Monopterus_albus
ENSIPUG00000007432	prpf18	100	82.720	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSIPUG00000007432	prpf18	100	82.436	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSIPUG00000007432	prpf18	100	83.003	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSIPUG00000007432	prpf18	100	82.153	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSIPUG00000007432	prpf18	100	82.153	ENSMPUG00000000938	-	100	81.303	Mustela_putorius_furo
ENSIPUG00000007432	prpf18	100	82.436	ENSMLUG00000009200	-	100	81.870	Myotis_lucifugus
ENSIPUG00000007432	prpf18	66	82.328	ENSNGAG00000023550	-	82	83.043	Nannospalax_galili
ENSIPUG00000007432	prpf18	100	82.720	ENSNGAG00000012500	-	100	81.870	Nannospalax_galili
ENSIPUG00000007432	prpf18	100	83.853	ENSNBRG00000001778	prpf18	100	83.003	Neolamprologus_brichardi
ENSIPUG00000007432	prpf18	100	83.003	ENSNLEG00000012186	-	100	82.153	Nomascus_leucogenys
ENSIPUG00000007432	prpf18	73	75.290	ENSMEUG00000005032	-	75	75.290	Notamacropus_eugenii
ENSIPUG00000007432	prpf18	78	62.681	ENSOPRG00000002153	-	100	61.594	Ochotona_princeps
ENSIPUG00000007432	prpf18	100	82.436	ENSODEG00000003770	-	100	81.586	Octodon_degus
ENSIPUG00000007432	prpf18	98	83.237	ENSONIG00000014854	prpf18	96	82.370	Oreochromis_niloticus
ENSIPUG00000007432	prpf18	100	83.286	ENSOANG00000015404	-	100	82.153	Ornithorhynchus_anatinus
ENSIPUG00000007432	prpf18	100	82.720	ENSOCUG00000027756	-	96	82.544	Oryctolagus_cuniculus
ENSIPUG00000007432	prpf18	100	83.853	ENSORLG00000010293	prpf18	100	84.136	Oryzias_latipes
ENSIPUG00000007432	prpf18	100	83.853	ENSORLG00020001530	prpf18	100	84.136	Oryzias_latipes_hni
ENSIPUG00000007432	prpf18	100	83.853	ENSORLG00015013705	prpf18	100	84.136	Oryzias_latipes_hsok
ENSIPUG00000007432	prpf18	100	84.419	ENSOMEG00000009167	prpf18	100	83.853	Oryzias_melastigma
ENSIPUG00000007432	prpf18	100	82.153	ENSOGAG00000007294	-	100	81.303	Otolemur_garnettii
ENSIPUG00000007432	prpf18	100	82.436	ENSOARG00000006243	-	100	81.586	Ovis_aries
ENSIPUG00000007432	prpf18	100	83.003	ENSPPAG00000041959	-	100	82.153	Pan_paniscus
ENSIPUG00000007432	prpf18	100	82.436	ENSPPRG00000000107	-	100	81.303	Panthera_pardus
ENSIPUG00000007432	prpf18	100	82.436	ENSPTIG00000021094	-	100	81.303	Panthera_tigris_altaica
ENSIPUG00000007432	prpf18	100	83.003	ENSPTRG00000002306	PRPF18	100	82.153	Pan_troglodytes
ENSIPUG00000007432	prpf18	100	82.720	ENSPANG00000023346	-	100	81.870	Papio_anubis
ENSIPUG00000007432	prpf18	100	84.703	ENSPKIG00000014128	prpf18	96	84.419	Paramormyrops_kingsleyae
ENSIPUG00000007432	prpf18	100	83.569	ENSPSIG00000016064	-	100	81.586	Pelodiscus_sinensis
ENSIPUG00000007432	prpf18	100	78.187	ENSPMGG00000016486	prpf18	100	77.904	Periophthalmus_magnuspinnatus
ENSIPUG00000007432	prpf18	100	82.436	ENSPEMG00000013704	Prpf18	100	81.870	Peromyscus_maniculatus_bairdii
ENSIPUG00000007432	prpf18	100	73.938	ENSPMAG00000000204	prpf18	100	71.671	Petromyzon_marinus
ENSIPUG00000007432	prpf18	93	81.651	ENSPCIG00000012963	-	99	80.734	Phascolarctos_cinereus
ENSIPUG00000007432	prpf18	100	83.003	ENSPFOG00000017611	prpf18	100	82.436	Poecilia_formosa
ENSIPUG00000007432	prpf18	100	83.003	ENSPLAG00000000369	prpf18	100	82.153	Poecilia_latipinna
ENSIPUG00000007432	prpf18	100	83.286	ENSPMEG00000005183	prpf18	100	82.720	Poecilia_mexicana
ENSIPUG00000007432	prpf18	100	82.153	ENSPREG00000015232	prpf18	100	82.153	Poecilia_reticulata
ENSIPUG00000007432	prpf18	100	82.720	ENSPPYG00000002101	PRPF18	100	81.870	Pongo_abelii
ENSIPUG00000007432	prpf18	100	65.156	ENSPCAG00000010833	-	100	64.306	Procavia_capensis
ENSIPUG00000007432	prpf18	100	77.620	ENSPCOG00000013057	-	100	77.054	Propithecus_coquereli
ENSIPUG00000007432	prpf18	100	50.992	ENSPVAG00000002947	-	100	50.425	Pteropus_vampyrus
ENSIPUG00000007432	prpf18	100	83.853	ENSPNYG00000003554	prpf18	100	83.003	Pundamilia_nyererei
ENSIPUG00000007432	prpf18	100	87.819	ENSPNAG00000023151	prpf18	100	86.969	Pygocentrus_nattereri
ENSIPUG00000007432	prpf18	100	82.720	ENSRNOG00000018396	Prpf18	100	82.153	Rattus_norvegicus
ENSIPUG00000007432	prpf18	100	83.286	ENSRBIG00000028028	-	100	82.436	Rhinopithecus_bieti
ENSIPUG00000007432	prpf18	100	83.003	ENSRROG00000040695	-	100	82.153	Rhinopithecus_roxellana
ENSIPUG00000007432	prpf18	100	82.436	ENSSBOG00000034482	-	100	82.153	Saimiri_boliviensis_boliviensis
ENSIPUG00000007432	prpf18	100	82.436	ENSSHAG00000016463	-	100	81.586	Sarcophilus_harrisii
ENSIPUG00000007432	prpf18	100	68.555	ENSSHAG00000009669	-	100	67.705	Sarcophilus_harrisii
ENSIPUG00000007432	prpf18	98	83.862	ENSSFOG00015022118	prpf18	100	76.536	Scleropages_formosus
ENSIPUG00000007432	prpf18	67	48.936	ENSSFOG00015021154	-	89	49.785	Scleropages_formosus
ENSIPUG00000007432	prpf18	100	81.020	ENSSMAG00000005308	prpf18	100	80.453	Scophthalmus_maximus
ENSIPUG00000007432	prpf18	100	83.853	ENSSDUG00000015428	prpf18	100	83.286	Seriola_dumerili
ENSIPUG00000007432	prpf18	100	83.853	ENSSLDG00000023989	prpf18	100	83.286	Seriola_lalandi_dorsalis
ENSIPUG00000007432	prpf18	100	55.807	ENSSARG00000005307	-	100	54.958	Sorex_araneus
ENSIPUG00000007432	prpf18	100	83.569	ENSSPUG00000002619	-	100	82.153	Sphenodon_punctatus
ENSIPUG00000007432	prpf18	100	83.003	ENSSPAG00000019502	prpf18	100	82.720	Stegastes_partitus
ENSIPUG00000007432	prpf18	100	82.720	ENSSSCG00000026354	-	100	81.870	Sus_scrofa
ENSIPUG00000007432	prpf18	100	83.286	ENSTGUG00000002286	-	100	81.870	Taeniopygia_guttata
ENSIPUG00000007432	prpf18	100	81.303	ENSTRUG00000011278	prpf18	100	80.453	Takifugu_rubripes
ENSIPUG00000007432	prpf18	100	81.870	ENSTNIG00000000911	prpf18	100	81.020	Tetraodon_nigroviridis
ENSIPUG00000007432	prpf18	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSIPUG00000007432	prpf18	100	82.720	ENSTTRG00000011117	PRPF18	100	81.586	Tursiops_truncatus
ENSIPUG00000007432	prpf18	91	84.783	ENSUAMG00000001815	-	93	83.851	Ursus_americanus
ENSIPUG00000007432	prpf18	100	77.904	ENSUMAG00000012329	-	100	77.054	Ursus_maritimus
ENSIPUG00000007432	prpf18	100	76.771	ENSVPAG00000011486	-	100	75.921	Vicugna_pacos
ENSIPUG00000007432	prpf18	100	82.720	ENSVVUG00000005453	-	100	81.870	Vulpes_vulpes
ENSIPUG00000007432	prpf18	100	75.071	ENSXETG00000024057	prpf18	100	74.221	Xenopus_tropicalis
ENSIPUG00000007432	prpf18	100	81.408	ENSXCOG00000020414	prpf18	100	81.408	Xiphophorus_couchianus
ENSIPUG00000007432	prpf18	100	82.153	ENSXMAG00000004713	prpf18	91	81.586	Xiphophorus_maculatus