EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000007609 (Gene tree)
Gene ID: 108271276
Gene Symbol: larp6b
Alias: im:7142825|wu:fa55b04|zgc:162969
Full Name: la-related protein 6-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 6175 bases
Position: chr10:21462268-21468442
Accession: 108271276
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000011147	La	PF05383.17	4.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000011621	-	5098	XM_017478745	ENSIPUP00000011147	470 (aa)	XP_017334234	A0A2D0RUR7

Gene Model

Click here to download ENSIPUG00000007609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000007609	larp6b	90	35.225	ENSIPUG00000002828	-	95	36.930
ENSIPUG00000007609	larp6b	90	38.652	ENSIPUG00000010187	larp6	66	39.865

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007609	larp6b	50	43.621	ENSAPOG00000003568	-	67	43.621	Acanthochromis_polyacanthus
ENSIPUG00000007609	larp6b	50	44.398	ENSACIG00000008349	-	57	44.398	Amphilophus_citrinellus
ENSIPUG00000007609	larp6b	84	36.946	ENSAOCG00000004646	larp6b	69	47.248	Amphiprion_ocellaris
ENSIPUG00000007609	larp6b	85	36.500	ENSAPEG00000022748	-	66	48.309	Amphiprion_percula
ENSIPUG00000007609	larp6b	87	35.963	ENSATEG00000021222	-	89	36.145	Anabas_testudineus
ENSIPUG00000007609	larp6b	90	34.579	ENSACLG00000009988	larp6b	92	34.174	Astatotilapia_calliptera
ENSIPUG00000007609	larp6b	100	73.542	ENSAMXG00000018956	larp6b	100	73.333	Astyanax_mexicanus
ENSIPUG00000007609	larp6b	90	32.812	ENSCING00000008613	-	87	32.237	Ciona_intestinalis
ENSIPUG00000007609	larp6b	55	38.996	ENSCSAVG00000011718	-	86	38.996	Ciona_savignyi
ENSIPUG00000007609	larp6b	100	69.053	ENSDARG00000003968	larp6b	100	71.642	Danio_rerio
ENSIPUG00000007609	larp6b	100	61.169	ENSELUG00000021677	larp6b	100	61.169	Esox_lucius
ENSIPUG00000007609	larp6b	85	33.907	ENSGAFG00000020138	-	51	47.115	Gambusia_affinis
ENSIPUG00000007609	larp6b	88	35.181	ENSHBUG00000012344	larp6b	87	34.442	Haplochromis_burtoni
ENSIPUG00000007609	larp6b	84	38.832	ENSLBEG00000016460	-	69	53.030	Labrus_bergylta
ENSIPUG00000007609	larp6b	87	37.198	ENSMAMG00000005509	-	59	45.643	Mastacembelus_armatus
ENSIPUG00000007609	larp6b	90	34.579	ENSMZEG00005024390	larp6b	92	33.793	Maylandia_zebra
ENSIPUG00000007609	larp6b	88	34.541	ENSNBRG00000012748	larp6b	89	34.699	Neolamprologus_brichardi
ENSIPUG00000007609	larp6b	99	56.495	ENSPKIG00000025605	larp6b	97	56.289	Paramormyrops_kingsleyae
ENSIPUG00000007609	larp6b	85	33.167	ENSPLAG00000005133	-	55	45.098	Poecilia_latipinna
ENSIPUG00000007609	larp6b	85	32.754	ENSPMEG00000019947	-	56	45.098	Poecilia_mexicana
ENSIPUG00000007609	larp6b	86	35.181	ENSPNYG00000007025	larp6b	86	34.442	Pundamilia_nyererei
ENSIPUG00000007609	larp6b	100	74.580	ENSPNAG00000023854	larp6b	99	73.319	Pygocentrus_nattereri
ENSIPUG00000007609	larp6b	86	38.875	ENSSLDG00000017081	-	81	38.875	Seriola_lalandi_dorsalis
ENSIPUG00000007609	larp6b	84	38.308	ENSSPAG00000014320	-	85	38.806	Stegastes_partitus
ENSIPUG00000007609	larp6b	85	33.747	ENSXCOG00000018917	-	53	45.098	Xiphophorus_couchianus
ENSIPUG00000007609	larp6b	85	32.918	ENSXMAG00000025734	-	53	45.098	Xiphophorus_maculatus