EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000007685 (Gene tree)
Gene ID: 108258461
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 9079 bases
Position: chr26:16976775-16985853
Accession: 108258461
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000011287	EXOSC1	PF10447.9	1.9e-15	1	1
ENSIPUP00000011287	ECR1_N	PF14382.6	2.7e-12	1	1
ENSIPUP00000011319	ECR1_N	PF14382.6	1.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000011800	-	456	-	ENSIPUP00000011319	151 (aa)	-	-
ENSIPUT00000011768	-	4215	XM_017457115	ENSIPUP00000011287	194 (aa)	XP_017312604	A0A2D0Q2S3

Gene Model

Click here to download ENSIPUG00000007685's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007685's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007685	exosc1	98	80.105	ENSG00000171311	EXOSC1	98	80.105	Homo_sapiens
ENSIPUG00000007685	exosc1	100	93.299	ENSAPOG00000007822	exosc1	100	93.299	Acanthochromis_polyacanthus
ENSIPUG00000007685	exosc1	98	81.152	ENSAMEG00000000129	EXOSC1	98	81.152	Ailuropoda_melanoleuca
ENSIPUG00000007685	exosc1	95	90.811	ENSACIG00000018956	exosc1	91	90.811	Amphilophus_citrinellus
ENSIPUG00000007685	exosc1	100	92.784	ENSAOCG00000010699	exosc1	100	92.784	Amphiprion_ocellaris
ENSIPUG00000007685	exosc1	93	81.667	ENSAPEG00000012690	exosc1	97	81.667	Amphiprion_percula
ENSIPUG00000007685	exosc1	100	92.268	ENSATEG00000018683	exosc1	100	92.268	Anabas_testudineus
ENSIPUG00000007685	exosc1	96	79.679	ENSACAG00000002101	EXOSC1	96	79.679	Anolis_carolinensis
ENSIPUG00000007685	exosc1	98	80.628	ENSANAG00000034669	EXOSC1	98	80.628	Aotus_nancymaae
ENSIPUG00000007685	exosc1	100	91.753	ENSACLG00000021243	exosc1	100	91.753	Astatotilapia_calliptera
ENSIPUG00000007685	exosc1	100	96.907	ENSAMXG00000011116	exosc1	100	96.907	Astyanax_mexicanus
ENSIPUG00000007685	exosc1	98	81.152	ENSBTAG00000012699	EXOSC1	98	81.152	Bos_taurus
ENSIPUG00000007685	exosc1	94	35.602	WBGene00012966	exos-1	92	35.602	Caenorhabditis_elegans
ENSIPUG00000007685	exosc1	98	80.105	ENSCJAG00000016586	EXOSC1	98	80.105	Callithrix_jacchus
ENSIPUG00000007685	exosc1	98	80.628	ENSCAFG00000009068	EXOSC1	92	80.628	Canis_familiaris
ENSIPUG00000007685	exosc1	98	80.628	ENSCAFG00020006002	EXOSC1	92	80.628	Canis_lupus_dingo
ENSIPUG00000007685	exosc1	98	81.152	ENSCHIG00000015253	EXOSC1	98	81.152	Capra_hircus
ENSIPUG00000007685	exosc1	98	79.581	ENSTSYG00000000760	EXOSC1	98	79.581	Carlito_syrichta
ENSIPUG00000007685	exosc1	98	81.152	ENSCPOG00000001173	EXOSC1	98	81.152	Cavia_porcellus
ENSIPUG00000007685	exosc1	98	44.304	ENSCCAG00000023986	EXOSC1	98	44.304	Cebus_capucinus
ENSIPUG00000007685	exosc1	98	80.105	ENSCATG00000034114	EXOSC1	98	80.105	Cercocebus_atys
ENSIPUG00000007685	exosc1	98	81.152	ENSCLAG00000002463	EXOSC1	98	81.152	Chinchilla_lanigera
ENSIPUG00000007685	exosc1	98	79.581	ENSCSAG00000005870	EXOSC1	98	79.581	Chlorocebus_sabaeus
ENSIPUG00000007685	exosc1	95	68.478	ENSCHOG00000006477	EXOSC1	98	68.478	Choloepus_hoffmanni
ENSIPUG00000007685	exosc1	55	70.093	ENSCPBG00000011949	EXOSC1	88	70.093	Chrysemys_picta_bellii
ENSIPUG00000007685	exosc1	99	53.886	ENSCING00000022734	-	92	53.886	Ciona_intestinalis
ENSIPUG00000007685	exosc1	99	58.549	ENSCSAVG00000010865	-	98	58.549	Ciona_savignyi
ENSIPUG00000007685	exosc1	98	80.105	ENSCANG00000034159	EXOSC1	98	80.105	Colobus_angolensis_palliatus
ENSIPUG00000007685	exosc1	98	79.581	ENSCGRG00001000335	Exosc1	98	79.581	Cricetulus_griseus_chok1gshd
ENSIPUG00000007685	exosc1	98	79.581	ENSCGRG00000011602	Exosc1	98	79.581	Cricetulus_griseus_crigri
ENSIPUG00000007685	exosc1	100	77.835	ENSCSEG00000007895	exosc1	97	77.835	Cynoglossus_semilaevis
ENSIPUG00000007685	exosc1	100	84.021	ENSCVAG00000016748	exosc1	100	84.021	Cyprinodon_variegatus
ENSIPUG00000007685	exosc1	100	94.330	ENSDARG00000059841	exosc1	100	94.330	Danio_rerio
ENSIPUG00000007685	exosc1	74	76.552	ENSDNOG00000007983	EXOSC1	98	76.552	Dasypus_novemcinctus
ENSIPUG00000007685	exosc1	98	80.105	ENSDORG00000016528	Exosc1	98	80.105	Dipodomys_ordii
ENSIPUG00000007685	exosc1	95	48.947	FBgn0032346	Csl4	92	48.947	Drosophila_melanogaster
ENSIPUG00000007685	exosc1	98	79.058	ENSETEG00000002469	-	98	79.058	Echinops_telfairi
ENSIPUG00000007685	exosc1	97	68.750	ENSEBUG00000008164	exosc1	96	68.750	Eptatretus_burgeri
ENSIPUG00000007685	exosc1	98	72.775	ENSEASG00005008684	EXOSC1	98	72.775	Equus_asinus_asinus
ENSIPUG00000007685	exosc1	60	57.759	ENSECAG00000010621	EXOSC1	69	57.759	Equus_caballus
ENSIPUG00000007685	exosc1	98	79.581	ENSEEUG00000005647	EXOSC1	98	79.581	Erinaceus_europaeus
ENSIPUG00000007685	exosc1	99	85.787	ENSELUG00000017369	exosc1	87	85.787	Esox_lucius
ENSIPUG00000007685	exosc1	98	81.152	ENSFCAG00000040563	EXOSC1	92	81.152	Felis_catus
ENSIPUG00000007685	exosc1	98	79.581	ENSFALG00000008450	EXOSC1	98	79.581	Ficedula_albicollis
ENSIPUG00000007685	exosc1	98	81.152	ENSFDAG00000000846	EXOSC1	98	81.152	Fukomys_damarensis
ENSIPUG00000007685	exosc1	100	84.536	ENSFHEG00000009154	exosc1	100	84.536	Fundulus_heteroclitus
ENSIPUG00000007685	exosc1	100	90.206	ENSGMOG00000008993	exosc1	100	90.206	Gadus_morhua
ENSIPUG00000007685	exosc1	98	69.110	ENSGALG00000039917	EXOSC1	99	84.828	Gallus_gallus
ENSIPUG00000007685	exosc1	100	85.052	ENSGAFG00000010265	exosc1	95	85.052	Gambusia_affinis
ENSIPUG00000007685	exosc1	100	88.660	ENSGACG00000018936	exosc1	100	88.660	Gasterosteus_aculeatus
ENSIPUG00000007685	exosc1	98	78.534	ENSGAGG00000019192	EXOSC1	98	78.534	Gopherus_agassizii
ENSIPUG00000007685	exosc1	98	69.634	ENSGGOG00000003099	EXOSC1	98	69.634	Gorilla_gorilla
ENSIPUG00000007685	exosc1	100	91.753	ENSHBUG00000017857	exosc1	100	91.753	Haplochromis_burtoni
ENSIPUG00000007685	exosc1	98	80.628	ENSHGLG00000016927	EXOSC1	98	80.628	Heterocephalus_glaber_female
ENSIPUG00000007685	exosc1	98	80.628	ENSHGLG00100012208	EXOSC1	98	80.628	Heterocephalus_glaber_male
ENSIPUG00000007685	exosc1	100	90.206	ENSHCOG00000019882	exosc1	100	90.206	Hippocampus_comes
ENSIPUG00000007685	exosc1	61	63.866	ENSSTOG00000029860	-	91	63.866	Ictidomys_tridecemlineatus
ENSIPUG00000007685	exosc1	98	80.105	ENSSTOG00000006615	EXOSC1	98	80.105	Ictidomys_tridecemlineatus
ENSIPUG00000007685	exosc1	98	80.628	ENSJJAG00000013311	Exosc1	98	80.628	Jaculus_jaculus
ENSIPUG00000007685	exosc1	100	87.629	ENSKMAG00000001202	exosc1	82	87.629	Kryptolebias_marmoratus
ENSIPUG00000007685	exosc1	100	92.268	ENSLBEG00000011448	exosc1	100	92.268	Labrus_bergylta
ENSIPUG00000007685	exosc1	95	85.906	ENSLOCG00000003776	exosc1	94	85.906	Lepisosteus_oculatus
ENSIPUG00000007685	exosc1	98	80.628	ENSLAFG00000015983	EXOSC1	98	80.628	Loxodonta_africana
ENSIPUG00000007685	exosc1	98	80.105	ENSMFAG00000001493	EXOSC1	98	80.105	Macaca_fascicularis
ENSIPUG00000007685	exosc1	98	80.105	ENSMMUG00000020028	EXOSC1	98	76.821	Macaca_mulatta
ENSIPUG00000007685	exosc1	98	80.105	ENSMNEG00000029816	EXOSC1	98	80.105	Macaca_nemestrina
ENSIPUG00000007685	exosc1	98	76.821	ENSMLEG00000027643	EXOSC1	98	76.821	Mandrillus_leucophaeus
ENSIPUG00000007685	exosc1	100	92.268	ENSMAMG00000012200	exosc1	100	92.268	Mastacembelus_armatus
ENSIPUG00000007685	exosc1	100	91.753	ENSMZEG00005007042	exosc1	100	91.753	Maylandia_zebra
ENSIPUG00000007685	exosc1	98	70.157	ENSMAUG00000020462	-	98	70.157	Mesocricetus_auratus
ENSIPUG00000007685	exosc1	98	80.628	ENSMICG00000007664	EXOSC1	99	76.316	Microcebus_murinus
ENSIPUG00000007685	exosc1	97	75.132	ENSMOCG00000017124	-	96	75.132	Microtus_ochrogaster
ENSIPUG00000007685	exosc1	98	79.581	ENSMOCG00000006004	-	98	79.581	Microtus_ochrogaster
ENSIPUG00000007685	exosc1	96	88.276	ENSMMOG00000021403	exosc1	97	88.276	Mola_mola
ENSIPUG00000007685	exosc1	98	81.771	ENSMODG00000004213	EXOSC1	98	81.771	Monodelphis_domestica
ENSIPUG00000007685	exosc1	95	92.432	ENSMALG00000007061	exosc1	93	92.432	Monopterus_albus
ENSIPUG00000007685	exosc1	98	79.058	MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	Mus_caroli
ENSIPUG00000007685	exosc1	98	79.058	ENSMUSG00000034321	Exosc1	98	79.058	Mus_musculus
ENSIPUG00000007685	exosc1	98	79.581	MGP_PahariEiJ_G0014449	Exosc1	98	79.581	Mus_pahari
ENSIPUG00000007685	exosc1	98	79.058	MGP_SPRETEiJ_G0023880	Exosc1	98	79.058	Mus_spretus
ENSIPUG00000007685	exosc1	98	81.152	ENSMPUG00000017044	EXOSC1	98	81.152	Mustela_putorius_furo
ENSIPUG00000007685	exosc1	98	80.628	ENSMLUG00000009228	EXOSC1	98	80.628	Myotis_lucifugus
ENSIPUG00000007685	exosc1	98	79.058	ENSNGAG00000022033	Exosc1	98	79.058	Nannospalax_galili
ENSIPUG00000007685	exosc1	95	88.811	ENSNBRG00000024007	exosc1	93	88.811	Neolamprologus_brichardi
ENSIPUG00000007685	exosc1	98	79.581	ENSNLEG00000013872	EXOSC1	98	79.581	Nomascus_leucogenys
ENSIPUG00000007685	exosc1	58	72.321	ENSMEUG00000002246	EXOSC1	97	72.321	Notamacropus_eugenii
ENSIPUG00000007685	exosc1	98	80.628	ENSOPRG00000005065	EXOSC1	98	80.628	Ochotona_princeps
ENSIPUG00000007685	exosc1	98	81.675	ENSODEG00000016709	EXOSC1	98	81.675	Octodon_degus
ENSIPUG00000007685	exosc1	100	91.753	ENSONIG00000017683	exosc1	99	91.753	Oreochromis_niloticus
ENSIPUG00000007685	exosc1	59	90.351	ENSOANG00000006563	EXOSC1	98	86.992	Ornithorhynchus_anatinus
ENSIPUG00000007685	exosc1	98	74.869	ENSOCUG00000026461	-	98	74.869	Oryctolagus_cuniculus
ENSIPUG00000007685	exosc1	98	79.167	ENSOCUG00000011898	-	98	79.167	Oryctolagus_cuniculus
ENSIPUG00000007685	exosc1	100	85.128	ENSORLG00000011595	exosc1	100	85.128	Oryzias_latipes
ENSIPUG00000007685	exosc1	100	85.128	ENSORLG00020005831	exosc1	100	85.128	Oryzias_latipes_hni
ENSIPUG00000007685	exosc1	100	84.615	ENSORLG00015004317	exosc1	100	84.615	Oryzias_latipes_hsok
ENSIPUG00000007685	exosc1	100	71.649	ENSOMEG00000013907	exosc1	99	71.649	Oryzias_melastigma
ENSIPUG00000007685	exosc1	98	80.105	ENSOGAG00000016259	EXOSC1	98	80.105	Otolemur_garnettii
ENSIPUG00000007685	exosc1	98	80.628	ENSOARG00000010136	EXOSC1	98	80.628	Ovis_aries
ENSIPUG00000007685	exosc1	98	76.821	ENSPPAG00000039842	EXOSC1	98	76.821	Pan_paniscus
ENSIPUG00000007685	exosc1	98	81.152	ENSPPRG00000023366	EXOSC1	98	81.152	Panthera_pardus
ENSIPUG00000007685	exosc1	98	81.152	ENSPTIG00000017701	EXOSC1	98	81.152	Panthera_tigris_altaica
ENSIPUG00000007685	exosc1	98	80.105	ENSPTRG00000002808	EXOSC1	98	80.105	Pan_troglodytes
ENSIPUG00000007685	exosc1	98	80.105	ENSPANG00000021324	EXOSC1	98	80.105	Papio_anubis
ENSIPUG00000007685	exosc1	100	92.784	ENSPKIG00000016037	exosc1	100	92.784	Paramormyrops_kingsleyae
ENSIPUG00000007685	exosc1	91	66.845	ENSPSIG00000013571	EXOSC1	98	79.339	Pelodiscus_sinensis
ENSIPUG00000007685	exosc1	100	78.351	ENSPMGG00000014002	exosc1	100	78.351	Periophthalmus_magnuspinnatus
ENSIPUG00000007685	exosc1	98	79.581	ENSPEMG00000010710	-	98	79.581	Peromyscus_maniculatus_bairdii
ENSIPUG00000007685	exosc1	95	71.505	ENSPMAG00000000195	exosc1	95	71.505	Petromyzon_marinus
ENSIPUG00000007685	exosc1	98	80.628	ENSPCIG00000002210	EXOSC1	97	80.628	Phascolarctos_cinereus
ENSIPUG00000007685	exosc1	100	84.021	ENSPFOG00000006755	exosc1	95	84.021	Poecilia_formosa
ENSIPUG00000007685	exosc1	100	84.021	ENSPLAG00000005880	exosc1	100	84.021	Poecilia_latipinna
ENSIPUG00000007685	exosc1	100	84.021	ENSPMEG00000015598	exosc1	95	84.021	Poecilia_mexicana
ENSIPUG00000007685	exosc1	100	72.165	ENSPREG00000000405	exosc1	94	72.165	Poecilia_reticulata
ENSIPUG00000007685	exosc1	98	80.105	ENSPPYG00000002531	EXOSC1	98	80.105	Pongo_abelii
ENSIPUG00000007685	exosc1	98	79.581	ENSPCAG00000009135	EXOSC1	98	79.581	Procavia_capensis
ENSIPUG00000007685	exosc1	98	74.346	ENSPCOG00000027539	EXOSC1	98	74.346	Propithecus_coquereli
ENSIPUG00000007685	exosc1	98	80.628	ENSPVAG00000003372	EXOSC1	98	80.628	Pteropus_vampyrus
ENSIPUG00000007685	exosc1	100	91.753	ENSPNYG00000021745	exosc1	100	91.753	Pundamilia_nyererei
ENSIPUG00000007685	exosc1	100	96.907	ENSPNAG00000001944	exosc1	100	96.907	Pygocentrus_nattereri
ENSIPUG00000007685	exosc1	98	79.581	ENSRNOG00000048708	Exosc1	98	79.581	Rattus_norvegicus
ENSIPUG00000007685	exosc1	98	80.105	ENSRBIG00000035618	EXOSC1	98	80.105	Rhinopithecus_bieti
ENSIPUG00000007685	exosc1	98	80.105	ENSRROG00000032589	EXOSC1	98	76.821	Rhinopithecus_roxellana
ENSIPUG00000007685	exosc1	65	37.423	YNL232W	CSL4	55	37.423	Saccharomyces_cerevisiae
ENSIPUG00000007685	exosc1	98	80.628	ENSSBOG00000000359	EXOSC1	98	80.628	Saimiri_boliviensis_boliviensis
ENSIPUG00000007685	exosc1	75	89.726	ENSSHAG00000018219	EXOSC1	99	89.726	Sarcophilus_harrisii
ENSIPUG00000007685	exosc1	100	89.691	ENSSFOG00015016289	-	100	89.691	Scleropages_formosus
ENSIPUG00000007685	exosc1	100	93.814	ENSSFOG00015009069	exosc1	100	93.814	Scleropages_formosus
ENSIPUG00000007685	exosc1	100	92.268	ENSSMAG00000003721	exosc1	100	92.268	Scophthalmus_maximus
ENSIPUG00000007685	exosc1	100	91.237	ENSSDUG00000002993	exosc1	100	91.237	Seriola_dumerili
ENSIPUG00000007685	exosc1	100	91.237	ENSSLDG00000025181	exosc1	100	91.237	Seriola_lalandi_dorsalis
ENSIPUG00000007685	exosc1	98	70.157	ENSSARG00000000162	EXOSC1	98	70.157	Sorex_araneus
ENSIPUG00000007685	exosc1	98	76.963	ENSSPUG00000012263	EXOSC1	98	76.963	Sphenodon_punctatus
ENSIPUG00000007685	exosc1	100	83.505	ENSSPAG00000016792	exosc1	83	83.505	Stegastes_partitus
ENSIPUG00000007685	exosc1	98	80.105	ENSSSCG00000010518	EXOSC1	89	80.105	Sus_scrofa
ENSIPUG00000007685	exosc1	98	79.058	ENSTGUG00000009692	EXOSC1	98	79.058	Taeniopygia_guttata
ENSIPUG00000007685	exosc1	98	78.421	ENSTRUG00000007706	exosc1	98	78.421	Takifugu_rubripes
ENSIPUG00000007685	exosc1	98	78.756	ENSTNIG00000014079	exosc1	97	78.756	Tetraodon_nigroviridis
ENSIPUG00000007685	exosc1	98	75.393	ENSTBEG00000006011	EXOSC1	98	75.393	Tupaia_belangeri
ENSIPUG00000007685	exosc1	94	82.514	ENSTTRG00000009887	EXOSC1	99	82.514	Tursiops_truncatus
ENSIPUG00000007685	exosc1	99	66.102	ENSUAMG00000010266	EXOSC1	99	66.102	Ursus_americanus
ENSIPUG00000007685	exosc1	99	66.102	ENSUMAG00000022002	EXOSC1	99	66.102	Ursus_maritimus
ENSIPUG00000007685	exosc1	98	80.628	ENSVVUG00000023192	EXOSC1	62	80.628	Vulpes_vulpes
ENSIPUG00000007685	exosc1	99	76.684	ENSXETG00000003434	exosc1	99	76.684	Xenopus_tropicalis
ENSIPUG00000007685	exosc1	62	88.430	ENSXCOG00000014499	exosc1	93	88.430	Xiphophorus_couchianus
ENSIPUG00000007685	exosc1	100	72.680	ENSXMAG00000023382	exosc1	94	72.680	Xiphophorus_maculatus