EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000007699 (Gene tree)
Gene ID: 108279849
Gene Symbol: Rbm17
Alias: zgc:55840
Full Name: RNA binding motif protein 17
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 11807 bases
Position: chr19:7879147-7890953
Accession: 108279849
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000011404	RRM_1	PF00076.22	4.4e-05	1	1
ENSIPUP00000011362	RRM_1	PF00076.22	4.8e-05	1	1
ENSIPUP00000011404	G-patch	PF01585.23	6.6e-13	1	1
ENSIPUP00000011362	G-patch	PF01585.23	7.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000011888	-	1194	-	ENSIPUP00000011404	397 (aa)	-	-
ENSIPUT00000011846	-	2271	XM_017494383	ENSIPUP00000011362	420 (aa)	XP_017349872	W5U8A9

Gene Model

Click here to download ENSIPUG00000007699's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007699's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007699	Rbm17	100	77.518	ENSG00000134453	RBM17	100	77.518	Homo_sapiens
ENSIPUG00000007699	Rbm17	99	81.710	ENSAPOG00000007101	rbm17	99	77.197	Acanthochromis_polyacanthus
ENSIPUG00000007699	Rbm17	100	77.986	ENSAMEG00000002107	RBM17	100	77.986	Ailuropoda_melanoleuca
ENSIPUG00000007699	Rbm17	100	80.535	ENSACIG00000006251	rbm17	100	74.453	Amphilophus_citrinellus
ENSIPUG00000007699	Rbm17	100	81.882	ENSAOCG00000014892	rbm17	100	77.412	Amphiprion_ocellaris
ENSIPUG00000007699	Rbm17	100	81.882	ENSAPEG00000022779	rbm17	100	77.412	Amphiprion_percula
ENSIPUG00000007699	Rbm17	100	83.059	ENSATEG00000004406	rbm17	100	81.647	Anabas_testudineus
ENSIPUG00000007699	Rbm17	100	78.689	ENSAPLG00000004190	RBM17	100	78.689	Anas_platyrhynchos
ENSIPUG00000007699	Rbm17	90	74.490	ENSACAG00000005418	RBM17	100	74.300	Anolis_carolinensis
ENSIPUG00000007699	Rbm17	100	70.416	ENSANAG00000019330	-	92	85.841	Aotus_nancymaae
ENSIPUG00000007699	Rbm17	100	77.518	ENSANAG00000030127	RBM17	91	90.265	Aotus_nancymaae
ENSIPUG00000007699	Rbm17	100	80.494	ENSACLG00000003928	rbm17	100	74.321	Astatotilapia_calliptera
ENSIPUG00000007699	Rbm17	100	88.152	ENSAMXG00000005853	rbm17	100	88.626	Astyanax_mexicanus
ENSIPUG00000007699	Rbm17	100	77.518	ENSBTAG00000021951	RBM17	100	77.518	Bos_taurus
ENSIPUG00000007699	Rbm17	100	76.581	ENSBTAG00000011094	-	100	76.581	Bos_taurus
ENSIPUG00000007699	Rbm17	75	31.915	WBGene00010233	F58B3.7	56	34.568	Caenorhabditis_elegans
ENSIPUG00000007699	Rbm17	100	77.518	ENSCJAG00000020573	RBM17	100	77.518	Callithrix_jacchus
ENSIPUG00000007699	Rbm17	100	77.986	ENSCAFG00000005206	RBM17	100	77.986	Canis_familiaris
ENSIPUG00000007699	Rbm17	100	78.141	ENSCAFG00020005420	RBM17	100	78.141	Canis_lupus_dingo
ENSIPUG00000007699	Rbm17	100	77.889	ENSCHIG00000023204	-	100	77.518	Capra_hircus
ENSIPUG00000007699	Rbm17	100	75.971	ENSCHIG00000019921	-	100	75.410	Capra_hircus
ENSIPUG00000007699	Rbm17	100	77.752	ENSTSYG00000001165	RBM17	95	90.265	Carlito_syrichta
ENSIPUG00000007699	Rbm17	96	62.745	ENSCAPG00000006275	RBM17	100	66.758	Cavia_aperea
ENSIPUG00000007699	Rbm17	100	78.345	ENSCPOG00000005679	RBM17	100	78.345	Cavia_porcellus
ENSIPUG00000007699	Rbm17	100	77.518	ENSCCAG00000018655	RBM17	91	90.265	Cebus_capucinus
ENSIPUG00000007699	Rbm17	100	77.638	ENSCATG00000041566	RBM17	91	90.265	Cercocebus_atys
ENSIPUG00000007699	Rbm17	100	78.689	ENSCLAG00000012195	RBM17	99	78.689	Chinchilla_lanigera
ENSIPUG00000007699	Rbm17	100	77.518	ENSCSAG00000013564	RBM17	100	77.518	Chlorocebus_sabaeus
ENSIPUG00000007699	Rbm17	93	61.111	ENSCHOG00000005131	RBM17	100	61.111	Choloepus_hoffmanni
ENSIPUG00000007699	Rbm17	100	78.220	ENSCPBG00000019836	RBM17	100	78.220	Chrysemys_picta_bellii
ENSIPUG00000007699	Rbm17	99	45.863	ENSCSAVG00000008782	-	99	44.208	Ciona_savignyi
ENSIPUG00000007699	Rbm17	100	77.283	ENSCANG00000030987	RBM17	91	90.265	Colobus_angolensis_palliatus
ENSIPUG00000007699	Rbm17	98	70.488	ENSCANG00000023715	-	99	70.488	Colobus_angolensis_palliatus
ENSIPUG00000007699	Rbm17	100	63.750	ENSCGRG00001009256	-	62	61.603	Cricetulus_griseus_chok1gshd
ENSIPUG00000007699	Rbm17	100	78.689	ENSCGRG00001013842	Rbm17	100	78.689	Cricetulus_griseus_chok1gshd
ENSIPUG00000007699	Rbm17	100	78.689	ENSCGRG00000006907	Rbm17	100	78.689	Cricetulus_griseus_crigri
ENSIPUG00000007699	Rbm17	100	80.986	ENSCSEG00000018164	rbm17	100	79.577	Cynoglossus_semilaevis
ENSIPUG00000007699	Rbm17	100	81.203	ENSCVAG00000002476	rbm17	100	75.689	Cyprinodon_variegatus
ENSIPUG00000007699	Rbm17	100	87.381	ENSDARG00000031346	rbm17	100	87.381	Danio_rerio
ENSIPUG00000007699	Rbm17	100	77.283	ENSDNOG00000035920	RBM17	100	77.283	Dasypus_novemcinctus
ENSIPUG00000007699	Rbm17	99	36.947	FBgn0086683	Spf45	62	44.664	Drosophila_melanogaster
ENSIPUG00000007699	Rbm17	87	81.221	ENSETEG00000006642	RBM17	80	81.221	Echinops_telfairi
ENSIPUG00000007699	Rbm17	65	66.667	ENSEBUG00000010253	rbm17	82	66.667	Eptatretus_burgeri
ENSIPUG00000007699	Rbm17	100	77.750	ENSEASG00005019205	-	100	77.114	Equus_asinus_asinus
ENSIPUG00000007699	Rbm17	93	74.747	ENSEASG00005009236	-	100	74.747	Equus_asinus_asinus
ENSIPUG00000007699	Rbm17	100	69.175	ENSECAG00000001379	-	100	68.618	Equus_caballus
ENSIPUG00000007699	Rbm17	100	70.250	ENSECAG00000008939	RBM17	100	70.500	Equus_caballus
ENSIPUG00000007699	Rbm17	86	61.622	ENSEEUG00000013077	RBM17	100	61.622	Erinaceus_europaeus
ENSIPUG00000007699	Rbm17	99	81.395	ENSELUG00000006440	rbm17	99	77.209	Esox_lucius
ENSIPUG00000007699	Rbm17	100	77.986	ENSFCAG00000031988	RBM17	100	77.986	Felis_catus
ENSIPUG00000007699	Rbm17	100	78.689	ENSFALG00000001790	RBM17	100	78.689	Ficedula_albicollis
ENSIPUG00000007699	Rbm17	100	78.689	ENSFDAG00000007470	RBM17	100	78.689	Fukomys_damarensis
ENSIPUG00000007699	Rbm17	100	81.500	ENSFHEG00000001266	rbm17	100	80.093	Fundulus_heteroclitus
ENSIPUG00000007699	Rbm17	99	78.385	ENSGMOG00000008438	rbm17	100	73.810	Gadus_morhua
ENSIPUG00000007699	Rbm17	100	78.689	ENSGALG00000006332	RBM17	100	78.689	Gallus_gallus
ENSIPUG00000007699	Rbm17	100	81.000	ENSGAFG00000019879	rbm17	100	76.000	Gambusia_affinis
ENSIPUG00000007699	Rbm17	99	82.033	ENSGACG00000019174	rbm17	99	76.596	Gasterosteus_aculeatus
ENSIPUG00000007699	Rbm17	100	78.220	ENSGAGG00000019906	RBM17	100	78.220	Gopherus_agassizii
ENSIPUG00000007699	Rbm17	100	80.929	ENSHBUG00000016624	rbm17	100	76.179	Haplochromis_burtoni
ENSIPUG00000007699	Rbm17	100	78.689	ENSHGLG00000011580	RBM17	100	78.689	Heterocephalus_glaber_female
ENSIPUG00000007699	Rbm17	100	78.689	ENSHGLG00100010460	RBM17	100	78.689	Heterocephalus_glaber_male
ENSIPUG00000007699	Rbm17	99	82.742	ENSHCOG00000010865	rbm17	100	75.887	Hippocampus_comes
ENSIPUG00000007699	Rbm17	100	78.689	ENSSTOG00000013591	RBM17	100	78.689	Ictidomys_tridecemlineatus
ENSIPUG00000007699	Rbm17	100	78.689	ENSJJAG00000022886	Rbm17	100	78.689	Jaculus_jaculus
ENSIPUG00000007699	Rbm17	100	57.143	ENSJJAG00000000993	-	100	54.801	Jaculus_jaculus
ENSIPUG00000007699	Rbm17	100	82.075	ENSKMAG00000021400	rbm17	100	82.783	Kryptolebias_marmoratus
ENSIPUG00000007699	Rbm17	100	82.353	ENSLBEG00000000881	rbm17	100	82.353	Labrus_bergylta
ENSIPUG00000007699	Rbm17	99	66.745	ENSLACG00000017297	RBM17	99	63.380	Latimeria_chalumnae
ENSIPUG00000007699	Rbm17	100	82.135	ENSLOCG00000015659	rbm17	100	76.798	Lepisosteus_oculatus
ENSIPUG00000007699	Rbm17	100	77.752	ENSLAFG00000011629	RBM17	100	77.752	Loxodonta_africana
ENSIPUG00000007699	Rbm17	100	77.638	ENSMFAG00000035521	RBM17	91	90.265	Macaca_fascicularis
ENSIPUG00000007699	Rbm17	100	77.518	ENSMMUG00000015152	RBM17	91	90.265	Macaca_mulatta
ENSIPUG00000007699	Rbm17	100	77.638	ENSMNEG00000017264	RBM17	91	90.265	Macaca_nemestrina
ENSIPUG00000007699	Rbm17	100	77.638	ENSMLEG00000029340	RBM17	91	90.265	Mandrillus_leucophaeus
ENSIPUG00000007699	Rbm17	100	82.118	ENSMAMG00000000387	rbm17	100	82.588	Mastacembelus_armatus
ENSIPUG00000007699	Rbm17	100	80.896	ENSMZEG00005015179	rbm17	100	76.179	Maylandia_zebra
ENSIPUG00000007699	Rbm17	100	78.322	ENSMGAG00000003981	RBM17	100	78.322	Meleagris_gallopavo
ENSIPUG00000007699	Rbm17	100	78.689	ENSMAUG00000019247	Rbm17	100	78.689	Mesocricetus_auratus
ENSIPUG00000007699	Rbm17	100	71.963	ENSMICG00000041489	-	100	71.963	Microcebus_murinus
ENSIPUG00000007699	Rbm17	100	78.220	ENSMICG00000003976	-	100	78.220	Microcebus_murinus
ENSIPUG00000007699	Rbm17	100	78.689	ENSMOCG00000011847	Rbm17	100	78.689	Microtus_ochrogaster
ENSIPUG00000007699	Rbm17	93	63.728	ENSMOCG00000014517	-	99	61.230	Microtus_ochrogaster
ENSIPUG00000007699	Rbm17	100	77.108	ENSMMOG00000010264	rbm17	100	69.398	Mola_mola
ENSIPUG00000007699	Rbm17	100	77.986	ENSMODG00000016648	RBM17	100	77.986	Monodelphis_domestica
ENSIPUG00000007699	Rbm17	100	83.960	ENSMALG00000010597	rbm17	100	83.333	Monopterus_albus
ENSIPUG00000007699	Rbm17	100	78.454	MGP_CAROLIEiJ_G0023173	Rbm17	100	78.454	Mus_caroli
ENSIPUG00000007699	Rbm17	100	78.454	ENSMUSG00000037197	Rbm17	100	78.454	Mus_musculus
ENSIPUG00000007699	Rbm17	100	78.454	MGP_PahariEiJ_G0019233	Rbm17	100	78.454	Mus_pahari
ENSIPUG00000007699	Rbm17	100	78.454	MGP_SPRETEiJ_G0024091	Rbm17	100	78.454	Mus_spretus
ENSIPUG00000007699	Rbm17	86	75.676	ENSMPUG00000016359	RBM17	96	75.676	Mustela_putorius_furo
ENSIPUG00000007699	Rbm17	100	75.000	ENSMLUG00000025709	-	100	74.005	Myotis_lucifugus
ENSIPUG00000007699	Rbm17	100	76.869	ENSMLUG00000002302	-	100	76.869	Myotis_lucifugus
ENSIPUG00000007699	Rbm17	100	56.927	ENSNGAG00000000663	-	95	73.034	Nannospalax_galili
ENSIPUG00000007699	Rbm17	100	78.689	ENSNGAG00000000741	Rbm17	100	78.689	Nannospalax_galili
ENSIPUG00000007699	Rbm17	100	79.699	ENSNBRG00000018148	rbm17	100	79.699	Neolamprologus_brichardi
ENSIPUG00000007699	Rbm17	100	77.518	ENSNLEG00000033350	RBM17	91	90.265	Nomascus_leucogenys
ENSIPUG00000007699	Rbm17	100	72.834	ENSMEUG00000011347	RBM17	100	72.834	Notamacropus_eugenii
ENSIPUG00000007699	Rbm17	100	78.505	ENSODEG00000004393	RBM17	100	78.505	Octodon_degus
ENSIPUG00000007699	Rbm17	97	62.564	ENSODEG00000007286	-	99	59.658	Octodon_degus
ENSIPUG00000007699	Rbm17	100	80.425	ENSONIG00000011838	rbm17	100	75.708	Oreochromis_niloticus
ENSIPUG00000007699	Rbm17	100	77.518	ENSOANG00000015455	RBM17	100	77.986	Ornithorhynchus_anatinus
ENSIPUG00000007699	Rbm17	100	81.176	ENSORLG00000028798	rbm17	100	80.597	Oryzias_latipes
ENSIPUG00000007699	Rbm17	100	81.176	ENSORLG00020004593	rbm17	100	80.201	Oryzias_latipes_hni
ENSIPUG00000007699	Rbm17	100	81.412	ENSORLG00015000033	rbm17	99	80.000	Oryzias_latipes_hsok
ENSIPUG00000007699	Rbm17	100	81.412	ENSOMEG00000012060	rbm17	100	87.037	Oryzias_melastigma
ENSIPUG00000007699	Rbm17	100	78.220	ENSOGAG00000015687	RBM17	100	78.220	Otolemur_garnettii
ENSIPUG00000007699	Rbm17	100	77.518	ENSOARG00000012975	RBM17	100	77.518	Ovis_aries
ENSIPUG00000007699	Rbm17	100	77.518	ENSPPAG00000032347	RBM17	91	90.265	Pan_paniscus
ENSIPUG00000007699	Rbm17	100	77.986	ENSPPRG00000010706	RBM17	100	77.986	Panthera_pardus
ENSIPUG00000007699	Rbm17	100	77.986	ENSPTIG00000007596	RBM17	100	77.986	Panthera_tigris_altaica
ENSIPUG00000007699	Rbm17	100	77.518	ENSPTRG00000002265	RBM17	91	90.265	Pan_troglodytes
ENSIPUG00000007699	Rbm17	100	77.638	ENSPANG00000023425	RBM17	91	90.265	Papio_anubis
ENSIPUG00000007699	Rbm17	100	83.063	ENSPKIG00000025526	rbm17	100	76.977	Paramormyrops_kingsleyae
ENSIPUG00000007699	Rbm17	100	80.549	ENSPKIG00000005048	-	100	74.813	Paramormyrops_kingsleyae
ENSIPUG00000007699	Rbm17	100	77.209	ENSPSIG00000012332	RBM17	100	77.209	Pelodiscus_sinensis
ENSIPUG00000007699	Rbm17	100	80.000	ENSPMGG00000007980	rbm17	100	77.037	Periophthalmus_magnuspinnatus
ENSIPUG00000007699	Rbm17	100	78.689	ENSPEMG00000014320	Rbm17	100	78.689	Peromyscus_maniculatus_bairdii
ENSIPUG00000007699	Rbm17	100	77.622	ENSPCIG00000019260	-	100	77.622	Phascolarctos_cinereus
ENSIPUG00000007699	Rbm17	100	80.751	ENSPFOG00000013271	rbm17	100	81.455	Poecilia_formosa
ENSIPUG00000007699	Rbm17	100	80.905	ENSPLAG00000004455	rbm17	100	81.221	Poecilia_latipinna
ENSIPUG00000007699	Rbm17	100	80.751	ENSPMEG00000014864	rbm17	100	81.455	Poecilia_mexicana
ENSIPUG00000007699	Rbm17	100	80.750	ENSPREG00000015589	rbm17	100	81.368	Poecilia_reticulata
ENSIPUG00000007699	Rbm17	99	59.804	ENSPPYG00000019881	-	58	59.514	Pongo_abelii
ENSIPUG00000007699	Rbm17	100	77.518	ENSPPYG00000002067	RBM17	100	77.518	Pongo_abelii
ENSIPUG00000007699	Rbm17	100	70.492	ENSPCAG00000016879	RBM17	100	70.492	Procavia_capensis
ENSIPUG00000007699	Rbm17	100	78.055	ENSPCOG00000027881	RBM17	100	77.752	Propithecus_coquereli
ENSIPUG00000007699	Rbm17	100	69.789	ENSPVAG00000015499	RBM17	100	68.537	Pteropus_vampyrus
ENSIPUG00000007699	Rbm17	100	90.758	ENSPNAG00000030046	rbm17	100	90.758	Pygocentrus_nattereri
ENSIPUG00000007699	Rbm17	100	78.689	ENSRNOG00000018767	Rbm17	100	78.689	Rattus_norvegicus
ENSIPUG00000007699	Rbm17	100	77.518	ENSRBIG00000043727	RBM17	91	90.265	Rhinopithecus_bieti
ENSIPUG00000007699	Rbm17	100	77.638	ENSRROG00000044142	RBM17	91	90.265	Rhinopithecus_roxellana
ENSIPUG00000007699	Rbm17	100	77.283	ENSSBOG00000031661	-	91	89.381	Saimiri_boliviensis_boliviensis
ENSIPUG00000007699	Rbm17	100	69.087	ENSSBOG00000023653	-	100	65.808	Saimiri_boliviensis_boliviensis
ENSIPUG00000007699	Rbm17	100	78.689	ENSSHAG00000012480	-	100	78.689	Sarcophilus_harrisii
ENSIPUG00000007699	Rbm17	100	84.149	ENSSFOG00015009892	rbm17	100	78.555	Scleropages_formosus
ENSIPUG00000007699	Rbm17	100	81.750	ENSSMAG00000012368	rbm17	100	79.861	Scophthalmus_maximus
ENSIPUG00000007699	Rbm17	100	84.171	ENSSDUG00000015015	rbm17	100	82.448	Seriola_dumerili
ENSIPUG00000007699	Rbm17	100	84.171	ENSSLDG00000014486	rbm17	100	82.448	Seriola_lalandi_dorsalis
ENSIPUG00000007699	Rbm17	50	76.106	ENSSARG00000001792	-	79	76.106	Sorex_araneus
ENSIPUG00000007699	Rbm17	99	77.412	ENSSPUG00000001036	RBM17	99	77.412	Sphenodon_punctatus
ENSIPUG00000007699	Rbm17	100	81.463	ENSSPAG00000002338	rbm17	100	82.588	Stegastes_partitus
ENSIPUG00000007699	Rbm17	100	77.283	ENSSSCG00000011134	RBM17	100	77.283	Sus_scrofa
ENSIPUG00000007699	Rbm17	100	78.689	ENSTGUG00000002013	RBM17	100	78.689	Taeniopygia_guttata
ENSIPUG00000007699	Rbm17	100	83.059	ENSTRUG00000010698	rbm17	100	76.941	Takifugu_rubripes
ENSIPUG00000007699	Rbm17	100	82.824	ENSTNIG00000006892	rbm17	100	79.512	Tetraodon_nigroviridis
ENSIPUG00000007699	Rbm17	100	61.071	ENSTBEG00000014686	RBM17	77	84.821	Tupaia_belangeri
ENSIPUG00000007699	Rbm17	90	75.907	ENSTTRG00000001344	RBM17	100	75.907	Tursiops_truncatus
ENSIPUG00000007699	Rbm17	100	77.363	ENSUAMG00000009499	RBM17	100	76.866	Ursus_americanus
ENSIPUG00000007699	Rbm17	100	78.141	ENSUMAG00000012237	RBM17	100	77.986	Ursus_maritimus
ENSIPUG00000007699	Rbm17	100	67.447	ENSVPAG00000005497	RBM17	80	83.929	Vicugna_pacos
ENSIPUG00000007699	Rbm17	100	78.141	ENSVVUG00000006780	RBM17	100	78.141	Vulpes_vulpes
ENSIPUG00000007699	Rbm17	99	76.284	ENSXETG00000018123	rbm17	100	75.490	Xenopus_tropicalis
ENSIPUG00000007699	Rbm17	100	79.196	ENSXMAG00000008674	rbm17	100	79.905	Xiphophorus_maculatus