EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000007890 (Gene tree)
Gene ID: 108269040
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 4-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 2340 bases
Position: chr1:11425804-11428143
Accession: 108269040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000011575	RRM_1	PF00076.22	6.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000012063	-	1617	XM_017474539	ENSIPUP00000011575	161 (aa)	XP_017330028	A0A2D0RHL9

Gene Model

Click here to download ENSIPUG00000007890's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000007890	-	63	42.157	ENSIPUG00000006760	-	51	42.157
ENSIPUG00000007890	-	61	42.424	ENSIPUG00000020086	-	55	42.424
ENSIPUG00000007890	-	76	41.304	ENSIPUG00000012602	pabpc1l	51	41.304
ENSIPUG00000007890	-	65	47.872	ENSIPUG00000024284	-	53	47.872

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007890	-	51	53.659	ENSG00000070756	PABPC1	81	61.290	Homo_sapiens
ENSIPUG00000007890	-	70	43.750	ENSTSYG00000037130	-	61	45.455	Carlito_syrichta
ENSIPUG00000007890	-	73	38.596	ENSCCAG00000028512	-	58	38.596	Cebus_capucinus
ENSIPUG00000007890	-	50	45.000	ENSCANG00000036233	-	59	45.000	Colobus_angolensis_palliatus
ENSIPUG00000007890	-	51	42.683	ENSDNOG00000006598	-	54	42.683	Dasypus_novemcinctus
ENSIPUG00000007890	-	62	41.748	ENSELUG00000005247	-	74	41.748	Esox_lucius
ENSIPUG00000007890	-	66	42.308	ENSJJAG00000019230	Pabpc6	53	42.308	Jaculus_jaculus
ENSIPUG00000007890	-	64	52.439	ENSMMUG00000020835	PABPC3	53	52.439	Macaca_mulatta
ENSIPUG00000007890	-	51	53.659	ENSMNEG00000009340	-	51	53.659	Macaca_nemestrina
ENSIPUG00000007890	-	51	47.500	ENSNLEG00000034666	-	58	47.500	Nomascus_leucogenys
ENSIPUG00000007890	-	69	45.946	ENSODEG00000013269	-	59	45.946	Octodon_degus
ENSIPUG00000007890	-	54	51.250	ENSPANG00000032575	-	54	51.250	Papio_anubis
ENSIPUG00000007890	-	71	42.500	ENSSBOG00000020745	-	58	42.500	Saimiri_boliviensis_boliviensis
ENSIPUG00000007890	-	64	44.144	ENSSBOG00000021975	-	59	44.144	Saimiri_boliviensis_boliviensis
ENSIPUG00000007890	-	53	34.884	ENSSLDG00000009165	-	63	34.884	Seriola_lalandi_dorsalis
ENSIPUG00000007890	-	71	45.000	ENSSARG00000004448	PABPC1	54	45.000	Sorex_araneus
ENSIPUG00000007890	-	51	52.439	ENSSPUG00000018259	-	57	52.439	Sphenodon_punctatus