EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000007928 (Gene tree)
Gene ID: 108280551
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 7-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5016 bases
Position: chr20:6668821-6673836
Accession: 108280551
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000011652	RRM_1	PF00076.22	2.7e-14	1	1
ENSIPUP00000011639	RRM_1	PF00076.22	3.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000012142	-	731	XM_017495647	ENSIPUP00000011652	239 (aa)	XP_017351136	A0A2D0T8F4
ENSIPUT00000012129	-	4055	XM_017495646	ENSIPUP00000011639	262 (aa)	XP_017351135	-

Gene Model

Click here to download ENSIPUG00000007928's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG
ipu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000007928's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000007928	-	54	81.250	ENSIPUG00000019088	srsf7a	57	78.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000007928	-	56	48.120	ENSACIG00000016419	-	52	72.152	Amphilophus_citrinellus
ENSIPUG00000007928	-	75	68.889	ENSAMXG00000001532	srsf7a	69	68.966	Astyanax_mexicanus
ENSIPUG00000007928	-	93	84.141	ENSAMXG00000031648	-	94	83.843	Astyanax_mexicanus
ENSIPUG00000007928	-	51	71.545	ENSCAFG00020022807	SRSF7	81	75.676	Canis_lupus_dingo
ENSIPUG00000007928	-	51	71.545	ENSCHIG00000019180	SRSF7	81	75.676	Capra_hircus
ENSIPUG00000007928	-	51	71.545	ENSCPOG00000033318	SRSF7	81	75.676	Cavia_porcellus
ENSIPUG00000007928	-	51	71.545	ENSCLAG00000005235	SRSF7	81	75.676	Chinchilla_lanigera
ENSIPUG00000007928	-	56	83.704	ENSCSEG00000006378	srsf7a	78	88.182	Cynoglossus_semilaevis
ENSIPUG00000007928	-	55	50.000	ENSCSEG00000001311	-	75	65.263	Cynoglossus_semilaevis
ENSIPUG00000007928	-	53	81.746	ENSCVAG00000020083	srsf7a	72	68.449	Cyprinodon_variegatus
ENSIPUG00000007928	-	81	69.744	ENSDARG00000035325	srsf7a	84	93.443	Danio_rerio
ENSIPUG00000007928	-	66	47.619	ENSEBUG00000002677	-	53	64.198	Eptatretus_burgeri
ENSIPUG00000007928	-	51	71.545	ENSEASG00005005547	SRSF7	81	75.676	Equus_asinus_asinus
ENSIPUG00000007928	-	50	88.235	ENSELUG00000016922	srsf7a	77	89.720	Esox_lucius
ENSIPUG00000007928	-	82	60.664	ENSELUG00000018155	srsf7b	82	74.336	Esox_lucius
ENSIPUG00000007928	-	60	63.057	ENSFCAG00000031143	SRSF7	84	58.696	Felis_catus
ENSIPUG00000007928	-	51	71.545	ENSFDAG00000016030	-	81	75.676	Fukomys_damarensis
ENSIPUG00000007928	-	54	82.308	ENSFHEG00000007159	srsf7a	59	86.364	Fundulus_heteroclitus
ENSIPUG00000007928	-	64	58.929	ENSFHEG00000023046	srsf7b	77	63.429	Fundulus_heteroclitus
ENSIPUG00000007928	-	78	68.020	ENSGMOG00000002004	srsf7a	78	68.681	Gadus_morhua
ENSIPUG00000007928	-	54	65.385	ENSGAFG00000008856	srsf7b	78	73.394	Gambusia_affinis
ENSIPUG00000007928	-	51	71.545	ENSHGLG00100006124	-	81	75.676	Heterocephalus_glaber_male
ENSIPUG00000007928	-	51	71.545	ENSSTOG00000004389	SRSF7	81	75.676	Ictidomys_tridecemlineatus
ENSIPUG00000007928	-	53	55.469	ENSJJAG00000020230	-	66	58.182	Jaculus_jaculus
ENSIPUG00000007928	-	58	52.899	ENSLACG00000008131	SRSF3	50	71.605	Latimeria_chalumnae
ENSIPUG00000007928	-	67	47.205	ENSMAUG00000011430	-	54	58.537	Mesocricetus_auratus
ENSIPUG00000007928	-	51	71.545	ENSMICG00000005046	SRSF7	71	69.444	Microcebus_murinus
ENSIPUG00000007928	-	54	50.000	ENSMICG00000037691	-	51	66.667	Microcebus_murinus
ENSIPUG00000007928	-	54	82.812	ENSMMOG00000005208	srsf7a	72	86.364	Mola_mola
ENSIPUG00000007928	-	74	42.938	ENSOMEG00000014893	srsf3b	65	64.286	Oryzias_melastigma
ENSIPUG00000007928	-	60	63.057	ENSPPRG00000003682	SRSF7	84	58.696	Panthera_pardus
ENSIPUG00000007928	-	60	63.057	ENSPTIG00000006350	SRSF7	84	58.696	Panthera_tigris_altaica
ENSIPUG00000007928	-	57	67.857	ENSPKIG00000017425	srsf7b	63	78.378	Paramormyrops_kingsleyae
ENSIPUG00000007928	-	72	69.274	ENSPKIG00000008209	-	67	66.851	Paramormyrops_kingsleyae
ENSIPUG00000007928	-	52	66.667	ENSPMAG00000004472	srsf7a	94	56.150	Petromyzon_marinus
ENSIPUG00000007928	-	52	85.484	ENSPREG00000020685	srsf7a	86	86.364	Poecilia_reticulata
ENSIPUG00000007928	-	67	55.556	ENSPCOG00000023721	-	69	67.568	Propithecus_coquereli
ENSIPUG00000007928	-	60	63.057	ENSPVAG00000012076	SRSF7	80	58.696	Pteropus_vampyrus
ENSIPUG00000007928	-	94	88.106	ENSPNAG00000000149	-	94	88.106	Pygocentrus_nattereri
ENSIPUG00000007928	-	60	53.793	ENSPNAG00000012262	srsf3a	66	67.857	Pygocentrus_nattereri
ENSIPUG00000007928	-	51	81.148	ENSPNAG00000012288	srsf7a	68	71.264	Pygocentrus_nattereri
ENSIPUG00000007928	-	76	78.191	ENSSFOG00015006796	-	73	79.444	Scleropages_formosus
ENSIPUG00000007928	-	61	63.253	ENSSLDG00000021463	srsf7b	63	74.775	Seriola_lalandi_dorsalis
ENSIPUG00000007928	-	50	74.380	ENSSPAG00000017204	srsf7b	79	77.477	Stegastes_partitus
ENSIPUG00000007928	-	52	85.600	ENSSPAG00000022192	srsf7a	87	86.364	Stegastes_partitus
ENSIPUG00000007928	-	51	71.545	ENSSSCG00000008484	SRSF7	81	75.676	Sus_scrofa
ENSIPUG00000007928	-	74	38.418	ENSTRUG00000024882	srsf3b	62	62.245	Takifugu_rubripes
ENSIPUG00000007928	-	51	86.066	ENSTNIG00000014279	srsf7a	84	73.171	Tetraodon_nigroviridis
ENSIPUG00000007928	-	59	59.355	ENSTTRG00000014324	SRSF7	83	55.191	Tursiops_truncatus
ENSIPUG00000007928	-	58	51.773	ENSVVUG00000006092	-	70	57.534	Vulpes_vulpes
ENSIPUG00000007928	-	52	83.871	ENSXCOG00000009381	srsf7a	86	85.455	Xiphophorus_couchianus