EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000008367 (Gene tree)
Gene ID: 108272660
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 14021 bases
Position: chr12:14505206-14519226
Accession: 108272660
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000012350	DEAD	PF00270.29	3e-40	1	1
ENSIPUP00000012385	DEAD	PF00270.29	3.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000012908	-	1449	-	ENSIPUP00000012385	482 (aa)	-	-
ENSIPUT00000012871	-	4874	XM_017481223	ENSIPUP00000012350	482 (aa)	XP_017336712	A0A2D0S1V5

Gene Model

Click here to download ENSIPUG00000008367's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000008367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000008367	-	78	37.037	ENSIPUG00000021785	eif4a3	92	37.037
ENSIPUG00000008367	-	78	36.579	ENSIPUG00000015733	DDX39B	82	36.579
ENSIPUG00000008367	-	77	37.903	ENSIPUG00000005117	if4a1	91	37.903
ENSIPUG00000008367	-	72	36.986	ENSIPUG00000023912	ddx19	79	36.986
ENSIPUG00000008367	-	99	80.421	ENSIPUG00000000616	ddx6	99	80.550
ENSIPUG00000008367	-	74	36.022	ENSIPUG00000022795	zgc:193690	76	36.022
ENSIPUG00000008367	-	70	38.983	ENSIPUG00000003494	ddx1	53	38.983
ENSIPUG00000008367	-	78	36.316	ENSIPUG00000021552	ddx39aa	89	36.316
ENSIPUG00000008367	-	98	84.894	ENSIPUG00000012823	DDX6	98	84.632
ENSIPUG00000008367	-	75	30.831	ENSIPUG00000008623	ddx52	61	30.831
ENSIPUG00000008367	-	72	30.337	ENSIPUG00000008100	Ddx59	56	30.337
ENSIPUG00000008367	-	77	38.978	ENSIPUG00000009463	EIF4A2	90	38.978
ENSIPUG00000008367	-	67	30.725	ENSIPUG00000014551	ddx55	57	30.725
ENSIPUG00000008367	-	75	30.159	ENSIPUG00000016171	ddx41	60	30.159
ENSIPUG00000008367	-	66	31.307	ENSIPUG00000012876	ddx18	56	31.307
ENSIPUG00000008367	-	82	30.045	ENSIPUG00000023024	ddx3xa	63	30.045
ENSIPUG00000008367	-	78	33.333	ENSIPUG00000023788	ddx47	80	33.333
ENSIPUG00000008367	-	70	33.526	ENSIPUG00000023423	ddx43	50	33.526
ENSIPUG00000008367	-	72	32.961	ENSIPUG00000005386	ddx49	75	32.961
ENSIPUG00000008367	-	78	36.745	ENSIPUG00000021341	DDX39A	89	36.745
ENSIPUG00000008367	-	77	38.978	ENSIPUG00000012038	eif4a2	92	38.978
ENSIPUG00000008367	-	71	32.231	ENSIPUG00000001845	ddx4	59	32.231
ENSIPUG00000008367	-	79	31.068	ENSIPUG00000009936	ddx3xb	60	31.111
ENSIPUG00000008367	-	73	31.405	ENSIPUG00000014448	ddx5	64	30.717
ENSIPUG00000008367	-	75	31.250	ENSIPUG00000006602	ddx56	73	31.234
ENSIPUG00000008367	-	68	32.353	ENSIPUG00000015768	si:dkey-156n14.5	74	30.769
ENSIPUG00000008367	-	80	34.673	ENSIPUG00000004876	ddx20	50	34.673
ENSIPUG00000008367	-	74	32.065	ENSIPUG00000007815	ddx5	58	32.065

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000008367	-	74	95.225	ENSAPOG00000023627	-	90	95.225	Acanthochromis_polyacanthus
ENSIPUG00000008367	-	99	83.054	ENSAPOG00000014829	ddx61	97	83.755	Acanthochromis_polyacanthus
ENSIPUG00000008367	-	98	81.895	ENSACIG00000018355	-	97	81.895	Amphilophus_citrinellus
ENSIPUG00000008367	-	99	83.891	ENSAOCG00000007627	ddx61	97	84.599	Amphiprion_ocellaris
ENSIPUG00000008367	-	100	86.929	ENSAOCG00000006269	-	96	88.511	Amphiprion_ocellaris
ENSIPUG00000008367	-	100	86.929	ENSAPEG00000020642	-	96	88.511	Amphiprion_percula
ENSIPUG00000008367	-	100	86.929	ENSAPEG00000021368	-	96	88.511	Amphiprion_percula
ENSIPUG00000008367	-	99	83.891	ENSAPEG00000007293	ddx61	97	84.599	Amphiprion_percula
ENSIPUG00000008367	-	100	86.008	ENSATEG00000005424	-	97	87.185	Anabas_testudineus
ENSIPUG00000008367	-	99	84.134	ENSATEG00000011302	ddx61	99	83.966	Anabas_testudineus
ENSIPUG00000008367	-	99	84.277	ENSACLG00000027620	ddx61	99	84.277	Astatotilapia_calliptera
ENSIPUG00000008367	-	98	89.263	ENSACLG00000003260	-	97	89.641	Astatotilapia_calliptera
ENSIPUG00000008367	-	98	85.805	ENSAMXG00000032542	ddx61	98	85.684	Astyanax_mexicanus
ENSIPUG00000008367	-	99	89.419	ENSAMXG00000033980	-	96	90.275	Astyanax_mexicanus
ENSIPUG00000008367	-	99	88.100	ENSCSEG00000009893	-	97	88.100	Cynoglossus_semilaevis
ENSIPUG00000008367	-	100	86.128	ENSCVAG00000011006	-	96	87.500	Cyprinodon_variegatus
ENSIPUG00000008367	-	99	85.474	ENSDARG00000018425	ddx61	99	85.325	Danio_rerio
ENSIPUG00000008367	-	99	86.848	ENSELUG00000020545	ddx61	97	87.131	Esox_lucius
ENSIPUG00000008367	-	99	86.831	ENSELUG00000022538	-	98	87.371	Esox_lucius
ENSIPUG00000008367	-	100	86.515	ENSFHEG00000015487	-	96	88.085	Fundulus_heteroclitus
ENSIPUG00000008367	-	98	84.810	ENSGMOG00000013762	ddx61	99	84.277	Gadus_morhua
ENSIPUG00000008367	-	67	82.317	ENSGMOG00000003561	-	100	82.317	Gadus_morhua
ENSIPUG00000008367	-	99	86.749	ENSGAFG00000015865	-	96	88.486	Gambusia_affinis
ENSIPUG00000008367	-	100	86.626	ENSGACG00000002413	-	97	87.975	Gasterosteus_aculeatus
ENSIPUG00000008367	-	99	84.091	ENSGACG00000003401	ddx61	98	84.906	Gasterosteus_aculeatus
ENSIPUG00000008367	-	99	84.486	ENSHBUG00000017832	ddx61	99	84.486	Haplochromis_burtoni
ENSIPUG00000008367	-	98	89.263	ENSHBUG00000017033	-	97	89.641	Haplochromis_burtoni
ENSIPUG00000008367	-	89	87.935	ENSHCOG00000008184	ddx61	90	88.759	Hippocampus_comes
ENSIPUG00000008367	-	99	86.555	ENSHCOG00000012238	-	97	86.555	Hippocampus_comes
ENSIPUG00000008367	-	99	87.579	ENSKMAG00000007213	-	98	87.579	Kryptolebias_marmoratus
ENSIPUG00000008367	-	100	85.685	ENSLBEG00000016890	-	96	87.395	Labrus_bergylta
ENSIPUG00000008367	-	99	82.449	ENSLBEG00000001740	ddx61	99	82.449	Labrus_bergylta
ENSIPUG00000008367	-	99	81.649	ENSLACG00000015214	ddx61	99	81.612	Latimeria_chalumnae
ENSIPUG00000008367	-	76	78.906	ENSLOCG00000004352	ddx61	94	45.860	Lepisosteus_oculatus
ENSIPUG00000008367	-	100	86.242	ENSMAMG00000005559	-	96	87.789	Mastacembelus_armatus
ENSIPUG00000008367	-	98	84.289	ENSMAMG00000005321	ddx61	98	82.744	Mastacembelus_armatus
ENSIPUG00000008367	-	99	84.486	ENSMZEG00005003556	ddx61	99	84.486	Maylandia_zebra
ENSIPUG00000008367	-	98	89.263	ENSMZEG00005026268	-	97	89.641	Maylandia_zebra
ENSIPUG00000008367	-	73	74.788	ENSMMOG00000008825	-	99	69.577	Mola_mola
ENSIPUG00000008367	-	100	76.543	ENSMMOG00000013694	-	96	77.848	Mola_mola
ENSIPUG00000008367	-	98	82.803	ENSMMOG00000007415	ddx61	97	82.803	Mola_mola
ENSIPUG00000008367	-	100	86.100	ENSMALG00000013817	-	96	88.034	Monopterus_albus
ENSIPUG00000008367	-	99	72.083	ENSMALG00000013776	ddx61	97	71.992	Monopterus_albus
ENSIPUG00000008367	-	98	81.684	ENSNBRG00000015075	-	97	81.684	Neolamprologus_brichardi
ENSIPUG00000008367	-	99	77.500	ENSNBRG00000015800	ddx61	99	77.895	Neolamprologus_brichardi
ENSIPUG00000008367	-	99	84.167	ENSONIG00000011418	ddx61	99	84.421	Oreochromis_niloticus
ENSIPUG00000008367	-	98	89.053	ENSONIG00000013748	-	97	89.429	Oreochromis_niloticus
ENSIPUG00000008367	-	99	86.515	ENSORLG00000009178	-	99	86.515	Oryzias_latipes
ENSIPUG00000008367	-	99	86.722	ENSORLG00020015515	-	99	86.722	Oryzias_latipes_hni
ENSIPUG00000008367	-	99	86.515	ENSORLG00015006764	-	99	86.515	Oryzias_latipes_hsok
ENSIPUG00000008367	-	99	78.079	ENSOMEG00000022326	-	100	78.079	Oryzias_melastigma
ENSIPUG00000008367	-	98	87.631	ENSPKIG00000024264	ddx61	99	86.653	Paramormyrops_kingsleyae
ENSIPUG00000008367	-	99	80.632	ENSPMGG00000013355	-	98	80.632	Periophthalmus_magnuspinnatus
ENSIPUG00000008367	-	99	87.708	ENSPFOG00000005750	-	96	88.699	Poecilia_formosa
ENSIPUG00000008367	-	99	87.708	ENSPLAG00000000403	-	96	88.699	Poecilia_latipinna
ENSIPUG00000008367	-	99	87.841	ENSPMEG00000023737	-	98	87.841	Poecilia_mexicana
ENSIPUG00000008367	-	98	89.263	ENSPNYG00000003986	-	97	89.641	Pundamilia_nyererei
ENSIPUG00000008367	-	99	78.405	ENSPNYG00000015045	ddx61	99	78.405	Pundamilia_nyererei
ENSIPUG00000008367	-	99	90.625	ENSPNAG00000008742	-	97	91.158	Pygocentrus_nattereri
ENSIPUG00000008367	-	99	84.310	ENSPNAG00000024072	ddx61	99	84.211	Pygocentrus_nattereri
ENSIPUG00000008367	-	98	86.287	ENSSFOG00015021404	ddx61	98	85.331	Scleropages_formosus
ENSIPUG00000008367	-	100	86.186	ENSSMAG00000001793	-	97	87.368	Scophthalmus_maximus
ENSIPUG00000008367	-	97	84.829	ENSSMAG00000006591	ddx61	97	83.932	Scophthalmus_maximus
ENSIPUG00000008367	-	97	86.200	ENSSDUG00000009713	ddx61	97	84.937	Seriola_dumerili
ENSIPUG00000008367	-	100	86.392	ENSSDUG00000007530	-	96	87.949	Seriola_dumerili
ENSIPUG00000008367	-	97	85.928	ENSSLDG00000000132	ddx61	97	84.664	Seriola_lalandi_dorsalis
ENSIPUG00000008367	-	100	86.392	ENSSLDG00000007608	-	96	87.949	Seriola_lalandi_dorsalis
ENSIPUG00000008367	-	97	84.615	ENSSPAG00000001578	ddx61	97	83.721	Stegastes_partitus
ENSIPUG00000008367	-	100	87.216	ENSSPAG00000013878	-	96	88.983	Stegastes_partitus
ENSIPUG00000008367	-	99	86.013	ENSTRUG00000012432	-	97	85.625	Takifugu_rubripes
ENSIPUG00000008367	-	99	86.486	ENSTNIG00000003560	-	99	86.430	Tetraodon_nigroviridis
ENSIPUG00000008367	-	99	77.640	ENSXCOG00000001406	-	95	79.104	Xiphophorus_couchianus
ENSIPUG00000008367	-	99	86.957	ENSXMAG00000016090	-	96	88.699	Xiphophorus_maculatus