EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000008601 (Gene tree)
Gene ID: 108268879
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4133 bases
Position: chr8:18038548-18042680
Accession: 108268879
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000012606	HVSL	PF09749.9	3e-63	1	1
ENSIPUP00000012616	HVSL	PF09749.9	3.2e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000013137	-	1333	XM_017474195	ENSIPUP00000012606	288 (aa)	XP_017329684	A0A2D0RGM5
ENSIPUT00000013149	-	1100	XM_017474191	ENSIPUP00000012616	298 (aa)	XP_017329680	A0A2D0RGL2

Gene Model

Click here to download ENSIPUG00000008601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000008601's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000008601	usb1	78	54.464	ENSG00000103005	USB1	100	54.673	Homo_sapiens
ENSIPUG00000008601	usb1	100	56.014	ENSAPOG00000011942	usb1	99	56.944	Acanthochromis_polyacanthus
ENSIPUG00000008601	usb1	78	54.018	ENSAMEG00000017205	USB1	98	47.222	Ailuropoda_melanoleuca
ENSIPUG00000008601	usb1	100	54.514	ENSACIG00000012234	usb1	99	54.514	Amphilophus_citrinellus
ENSIPUG00000008601	usb1	100	55.903	ENSAOCG00000014831	usb1	99	57.292	Amphiprion_ocellaris
ENSIPUG00000008601	usb1	100	56.250	ENSAPEG00000000296	usb1	99	57.639	Amphiprion_percula
ENSIPUG00000008601	usb1	88	57.937	ENSATEG00000009348	usb1	99	54.514	Anabas_testudineus
ENSIPUG00000008601	usb1	78	58.850	ENSAPLG00000002756	USB1	100	58.850	Anas_platyrhynchos
ENSIPUG00000008601	usb1	78	54.825	ENSACAG00000015481	USB1	99	54.825	Anolis_carolinensis
ENSIPUG00000008601	usb1	78	53.125	ENSANAG00000035640	USB1	85	53.125	Aotus_nancymaae
ENSIPUG00000008601	usb1	78	63.111	ENSACLG00000020586	usb1	99	53.793	Astatotilapia_calliptera
ENSIPUG00000008601	usb1	99	70.000	ENSAMXG00000040146	usb1	95	69.310	Astyanax_mexicanus
ENSIPUG00000008601	usb1	99	46.181	ENSBTAG00000015758	USB1	97	48.047	Bos_taurus
ENSIPUG00000008601	usb1	84	51.029	ENSCJAG00000011733	USB1	98	47.569	Callithrix_jacchus
ENSIPUG00000008601	usb1	77	53.363	ENSCAFG00000008556	USB1	60	53.363	Canis_familiaris
ENSIPUG00000008601	usb1	77	53.363	ENSCAFG00020009263	USB1	84	53.363	Canis_lupus_dingo
ENSIPUG00000008601	usb1	99	47.222	ENSCHIG00000024290	USB1	97	48.438	Capra_hircus
ENSIPUG00000008601	usb1	78	51.786	ENSTSYG00000006997	USB1	98	45.361	Carlito_syrichta
ENSIPUG00000008601	usb1	78	42.857	ENSCAPG00000009057	USB1	96	42.857	Cavia_aperea
ENSIPUG00000008601	usb1	99	45.993	ENSCPOG00000014325	USB1	83	52.232	Cavia_porcellus
ENSIPUG00000008601	usb1	78	54.018	ENSCCAG00000022132	USB1	85	54.018	Cebus_capucinus
ENSIPUG00000008601	usb1	78	54.018	ENSCATG00000032174	USB1	85	54.018	Cercocebus_atys
ENSIPUG00000008601	usb1	59	52.047	ENSCLAG00000007363	USB1	97	52.047	Chinchilla_lanigera
ENSIPUG00000008601	usb1	78	54.018	ENSCSAG00000004783	USB1	85	54.018	Chlorocebus_sabaeus
ENSIPUG00000008601	usb1	78	57.080	ENSCPBG00000026943	USB1	98	49.826	Chrysemys_picta_bellii
ENSIPUG00000008601	usb1	79	31.489	ENSCSAVG00000000894	-	91	31.225	Ciona_savignyi
ENSIPUG00000008601	usb1	78	53.571	ENSCANG00000037135	USB1	85	53.571	Colobus_angolensis_palliatus
ENSIPUG00000008601	usb1	99	46.528	ENSCGRG00001011243	USB1	98	46.528	Cricetulus_griseus_chok1gshd
ENSIPUG00000008601	usb1	99	46.528	ENSCGRG00000013252	USB1	98	46.528	Cricetulus_griseus_crigri
ENSIPUG00000008601	usb1	100	54.167	ENSCSEG00000013881	usb1	99	53.819	Cynoglossus_semilaevis
ENSIPUG00000008601	usb1	78	59.389	ENSCVAG00000009252	usb1	98	59.825	Cyprinodon_variegatus
ENSIPUG00000008601	usb1	80	70.259	ENSDARG00000003841	usb1	100	60.690	Danio_rerio
ENSIPUG00000008601	usb1	78	54.018	ENSDORG00000001888	Usb1	97	48.828	Dipodomys_ordii
ENSIPUG00000008601	usb1	72	39.623	FBgn0037713	CG16790	79	39.623	Drosophila_melanogaster
ENSIPUG00000008601	usb1	87	43.426	ENSETEG00000019682	USB1	94	43.426	Echinops_telfairi
ENSIPUG00000008601	usb1	78	46.256	ENSEBUG00000005889	usb1	79	46.256	Eptatretus_burgeri
ENSIPUG00000008601	usb1	78	54.464	ENSEASG00005005484	USB1	85	54.464	Equus_asinus_asinus
ENSIPUG00000008601	usb1	77	54.709	ENSECAG00000019493	USB1	77	54.709	Equus_caballus
ENSIPUG00000008601	usb1	59	48.538	ENSEEUG00000000154	USB1	65	48.538	Erinaceus_europaeus
ENSIPUG00000008601	usb1	78	62.389	ENSELUG00000010974	usb1	100	53.979	Esox_lucius
ENSIPUG00000008601	usb1	78	54.018	ENSFCAG00000002693	USB1	98	46.875	Felis_catus
ENSIPUG00000008601	usb1	78	55.357	ENSFALG00000006876	USB1	84	55.357	Ficedula_albicollis
ENSIPUG00000008601	usb1	99	47.222	ENSFDAG00000010052	USB1	98	47.222	Fukomys_damarensis
ENSIPUG00000008601	usb1	89	52.918	ENSFHEG00000012334	usb1	98	52.529	Fundulus_heteroclitus
ENSIPUG00000008601	usb1	77	60.987	ENSGMOG00000004228	usb1	99	60.987	Gadus_morhua
ENSIPUG00000008601	usb1	77	54.911	ENSGALG00000035604	USB1	88	55.111	Gallus_gallus
ENSIPUG00000008601	usb1	100	55.363	ENSGAFG00000021890	usb1	99	53.898	Gambusia_affinis
ENSIPUG00000008601	usb1	100	52.431	ENSGACG00000003257	usb1	99	53.633	Gasterosteus_aculeatus
ENSIPUG00000008601	usb1	99	49.826	ENSGAGG00000022572	USB1	98	49.826	Gopherus_agassizii
ENSIPUG00000008601	usb1	78	54.911	ENSGGOG00000017147	USB1	85	54.911	Gorilla_gorilla
ENSIPUG00000008601	usb1	78	63.111	ENSHBUG00000009823	usb1	99	54.671	Haplochromis_burtoni
ENSIPUG00000008601	usb1	99	47.038	ENSHGLG00000016078	USB1	96	47.038	Heterocephalus_glaber_female
ENSIPUG00000008601	usb1	99	47.038	ENSHGLG00100005562	USB1	96	47.038	Heterocephalus_glaber_male
ENSIPUG00000008601	usb1	75	62.037	ENSHCOG00000015633	usb1	99	54.007	Hippocampus_comes
ENSIPUG00000008601	usb1	79	53.509	ENSSTOG00000007548	USB1	98	47.569	Ictidomys_tridecemlineatus
ENSIPUG00000008601	usb1	99	48.097	ENSJJAG00000021859	Usb1	84	54.018	Jaculus_jaculus
ENSIPUG00000008601	usb1	91	54.373	ENSKMAG00000007200	usb1	99	53.472	Kryptolebias_marmoratus
ENSIPUG00000008601	usb1	84	53.112	ENSLBEG00000008452	usb1	84	51.282	Labrus_bergylta
ENSIPUG00000008601	usb1	66	59.694	ENSLACG00000000105	USB1	86	50.190	Latimeria_chalumnae
ENSIPUG00000008601	usb1	100	53.000	ENSLOCG00000000465	usb1	100	53.333	Lepisosteus_oculatus
ENSIPUG00000008601	usb1	99	40.830	ENSLAFG00000002267	USB1	98	41.176	Loxodonta_africana
ENSIPUG00000008601	usb1	78	54.018	ENSMFAG00000003926	USB1	85	54.018	Macaca_fascicularis
ENSIPUG00000008601	usb1	78	54.018	ENSMMUG00000022669	USB1	85	54.018	Macaca_mulatta
ENSIPUG00000008601	usb1	78	53.571	ENSMNEG00000042487	USB1	85	53.571	Macaca_nemestrina
ENSIPUG00000008601	usb1	78	54.018	ENSMLEG00000028756	USB1	85	54.018	Mandrillus_leucophaeus
ENSIPUG00000008601	usb1	100	56.597	ENSMAMG00000015092	usb1	99	56.597	Mastacembelus_armatus
ENSIPUG00000008601	usb1	78	63.111	ENSMZEG00005010008	usb1	99	54.671	Maylandia_zebra
ENSIPUG00000008601	usb1	99	47.917	ENSMAUG00000007832	Usb1	98	47.917	Mesocricetus_auratus
ENSIPUG00000008601	usb1	78	54.018	ENSMICG00000004900	USB1	97	48.828	Microcebus_murinus
ENSIPUG00000008601	usb1	99	47.917	ENSMOCG00000022647	Usb1	84	54.464	Microtus_ochrogaster
ENSIPUG00000008601	usb1	78	62.946	ENSMMOG00000000490	usb1	99	54.167	Mola_mola
ENSIPUG00000008601	usb1	82	51.899	ENSMODG00000014067	USB1	99	46.758	Monodelphis_domestica
ENSIPUG00000008601	usb1	83	59.244	ENSMALG00000005930	usb1	99	53.819	Monopterus_albus
ENSIPUG00000008601	usb1	99	46.735	MGP_CAROLIEiJ_G0031421	Usb1	100	50.442	Mus_caroli
ENSIPUG00000008601	usb1	99	46.735	ENSMUSG00000031792	Usb1	100	50.442	Mus_musculus
ENSIPUG00000008601	usb1	78	52.232	MGP_PahariEiJ_G0023019	Usb1	100	52.137	Mus_pahari
ENSIPUG00000008601	usb1	99	46.735	MGP_SPRETEiJ_G0032540	Usb1	98	46.735	Mus_spretus
ENSIPUG00000008601	usb1	78	54.464	ENSMPUG00000004684	USB1	94	47.569	Mustela_putorius_furo
ENSIPUG00000008601	usb1	78	53.571	ENSMLUG00000007400	USB1	97	53.571	Myotis_lucifugus
ENSIPUG00000008601	usb1	86	51.210	ENSNGAG00000009703	Usb1	91	51.210	Nannospalax_galili
ENSIPUG00000008601	usb1	82	54.894	ENSNBRG00000008747	usb1	99	61.682	Neolamprologus_brichardi
ENSIPUG00000008601	usb1	73	53.589	ENSNLEG00000003340	USB1	84	53.589	Nomascus_leucogenys
ENSIPUG00000008601	usb1	99	46.528	ENSODEG00000016214	USB1	98	46.875	Octodon_degus
ENSIPUG00000008601	usb1	100	54.861	ENSONIG00000011063	usb1	100	54.861	Oreochromis_niloticus
ENSIPUG00000008601	usb1	78	53.333	ENSOANG00000012118	USB1	94	53.333	Ornithorhynchus_anatinus
ENSIPUG00000008601	usb1	79	61.233	ENSORLG00000012479	usb1	99	54.167	Oryzias_latipes
ENSIPUG00000008601	usb1	79	60.352	ENSORLG00020018671	usb1	99	53.472	Oryzias_latipes_hni
ENSIPUG00000008601	usb1	79	61.233	ENSORLG00015009679	usb1	99	52.778	Oryzias_latipes_hsok
ENSIPUG00000008601	usb1	100	55.556	ENSOMEG00000012930	usb1	99	55.556	Oryzias_melastigma
ENSIPUG00000008601	usb1	78	50.893	ENSOGAG00000003273	USB1	98	45.517	Otolemur_garnettii
ENSIPUG00000008601	usb1	78	54.018	ENSOARG00000001107	USB1	86	54.018	Ovis_aries
ENSIPUG00000008601	usb1	78	54.464	ENSPPAG00000042137	USB1	85	54.464	Pan_paniscus
ENSIPUG00000008601	usb1	78	53.571	ENSPPRG00000024797	USB1	84	53.571	Panthera_pardus
ENSIPUG00000008601	usb1	78	53.125	ENSPTIG00000007506	USB1	98	43.056	Panthera_tigris_altaica
ENSIPUG00000008601	usb1	74	55.140	ENSPTRG00000008172	USB1	100	55.140	Pan_troglodytes
ENSIPUG00000008601	usb1	78	54.018	ENSPANG00000025138	USB1	85	54.018	Papio_anubis
ENSIPUG00000008601	usb1	93	56.410	ENSPKIG00000015109	usb1	99	54.072	Paramormyrops_kingsleyae
ENSIPUG00000008601	usb1	78	43.697	ENSPSIG00000004305	USB1	100	43.697	Pelodiscus_sinensis
ENSIPUG00000008601	usb1	78	57.589	ENSPMGG00000017725	usb1	86	57.589	Periophthalmus_magnuspinnatus
ENSIPUG00000008601	usb1	78	54.018	ENSPEMG00000016183	Usb1	98	47.917	Peromyscus_maniculatus_bairdii
ENSIPUG00000008601	usb1	78	51.528	ENSPMAG00000000462	usb1	96	51.528	Petromyzon_marinus
ENSIPUG00000008601	usb1	100	55.363	ENSPFOG00000011130	usb1	99	54.795	Poecilia_formosa
ENSIPUG00000008601	usb1	100	55.363	ENSPLAG00000009820	usb1	99	54.795	Poecilia_latipinna
ENSIPUG00000008601	usb1	100	56.055	ENSPMEG00000006402	usb1	99	56.055	Poecilia_mexicana
ENSIPUG00000008601	usb1	89	55.253	ENSPREG00000001047	usb1	99	55.642	Poecilia_reticulata
ENSIPUG00000008601	usb1	73	50.237	ENSPPYG00000007401	USB1	84	50.237	Pongo_abelii
ENSIPUG00000008601	usb1	78	53.125	ENSPCOG00000022612	USB1	96	44.531	Propithecus_coquereli
ENSIPUG00000008601	usb1	78	53.571	ENSPVAG00000004613	USB1	86	53.571	Pteropus_vampyrus
ENSIPUG00000008601	usb1	78	63.111	ENSPNYG00000022262	usb1	99	54.671	Pundamilia_nyererei
ENSIPUG00000008601	usb1	100	70.608	ENSPNAG00000011736	usb1	100	69.388	Pygocentrus_nattereri
ENSIPUG00000008601	usb1	99	46.528	ENSRNOG00000013216	Usb1	98	46.528	Rattus_norvegicus
ENSIPUG00000008601	usb1	74	54.206	ENSRBIG00000044466	USB1	100	54.206	Rhinopithecus_bieti
ENSIPUG00000008601	usb1	78	54.018	ENSRROG00000029211	USB1	85	54.018	Rhinopithecus_roxellana
ENSIPUG00000008601	usb1	84	51.639	ENSSBOG00000029362	USB1	92	51.639	Saimiri_boliviensis_boliviensis
ENSIPUG00000008601	usb1	76	50.917	ENSSHAG00000006993	USB1	100	47.638	Sarcophilus_harrisii
ENSIPUG00000008601	usb1	78	70.536	ENSSFOG00015023663	usb1	94	59.344	Scleropages_formosus
ENSIPUG00000008601	usb1	80	58.025	ENSSMAG00000015834	usb1	99	51.438	Scophthalmus_maximus
ENSIPUG00000008601	usb1	78	64.000	ENSSDUG00000002949	usb1	99	55.709	Seriola_dumerili
ENSIPUG00000008601	usb1	80	63.319	ENSSLDG00000014174	usb1	99	55.903	Seriola_lalandi_dorsalis
ENSIPUG00000008601	usb1	74	55.607	ENSSPUG00000006741	USB1	100	55.607	Sphenodon_punctatus
ENSIPUG00000008601	usb1	100	53.265	ENSSPAG00000007484	usb1	99	53.265	Stegastes_partitus
ENSIPUG00000008601	usb1	84	50.410	ENSSSCG00000002807	USB1	98	47.222	Sus_scrofa
ENSIPUG00000008601	usb1	73	55.924	ENSTGUG00000004792	USB1	87	54.505	Taeniopygia_guttata
ENSIPUG00000008601	usb1	100	53.819	ENSTRUG00000021069	usb1	99	54.167	Takifugu_rubripes
ENSIPUG00000008601	usb1	100	49.135	ENSTNIG00000000626	usb1	98	49.135	Tetraodon_nigroviridis
ENSIPUG00000008601	usb1	78	38.839	ENSTBEG00000001507	USB1	97	38.839	Tupaia_belangeri
ENSIPUG00000008601	usb1	78	54.464	ENSUAMG00000016823	USB1	98	47.569	Ursus_americanus
ENSIPUG00000008601	usb1	74	54.206	ENSUMAG00000021369	USB1	100	54.206	Ursus_maritimus
ENSIPUG00000008601	usb1	77	53.812	ENSVVUG00000023700	USB1	86	53.812	Vulpes_vulpes
ENSIPUG00000008601	usb1	76	59.361	ENSXETG00000013795	usb1	97	56.790	Xenopus_tropicalis
ENSIPUG00000008601	usb1	88	55.294	ENSXMAG00000024687	usb1	80	55.078	Xiphophorus_maculatus