EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000008631 (Gene tree)
Gene ID: 108271318
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 9703 bases
Position: chr10:21991797-22001499
Accession: 108271318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000012724	MMR_HSR1	PF01926.23	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000013261	-	3638	XM_017478827	ENSIPUP00000012724	629 (aa)	XP_017334316	A0A2D0RVV9

Gene Model

Click here to download ENSIPUG00000008631's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000008631's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000008631	lsg1	63	35.429	ENSIPUG00000004850	gnl1	64	35.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000008631	lsg1	99	65.350	ENSG00000041802	LSG1	98	75.429	Homo_sapiens
ENSIPUG00000008631	lsg1	100	74.219	ENSAPOG00000009694	lsg1	100	74.921	Acanthochromis_polyacanthus
ENSIPUG00000008631	lsg1	99	63.030	ENSAMEG00000009343	LSG1	99	62.727	Ailuropoda_melanoleuca
ENSIPUG00000008631	lsg1	98	74.920	ENSACIG00000012406	lsg1	100	74.842	Amphilophus_citrinellus
ENSIPUG00000008631	lsg1	100	74.103	ENSAOCG00000016066	lsg1	100	74.646	Amphiprion_ocellaris
ENSIPUG00000008631	lsg1	100	74.488	ENSAPEG00000003252	lsg1	100	74.488	Amphiprion_percula
ENSIPUG00000008631	lsg1	98	75.362	ENSATEG00000011794	lsg1	100	75.276	Anabas_testudineus
ENSIPUG00000008631	lsg1	95	61.783	ENSACAG00000004222	LSG1	100	61.783	Anolis_carolinensis
ENSIPUG00000008631	lsg1	99	65.211	ENSANAG00000021153	LSG1	99	65.211	Aotus_nancymaae
ENSIPUG00000008631	lsg1	100	73.201	ENSACLG00000000520	lsg1	100	72.894	Astatotilapia_calliptera
ENSIPUG00000008631	lsg1	100	78.120	ENSAMXG00000008271	lsg1	100	77.504	Astyanax_mexicanus
ENSIPUG00000008631	lsg1	99	64.427	ENSBTAG00000008461	LSG1	99	64.733	Bos_taurus
ENSIPUG00000008631	lsg1	84	33.582	WBGene00016907	C53H9.2	98	32.013	Caenorhabditis_elegans
ENSIPUG00000008631	lsg1	99	65.060	ENSCJAG00000013962	LSG1	99	65.060	Callithrix_jacchus
ENSIPUG00000008631	lsg1	95	66.294	ENSCAFG00000013445	LSG1	100	66.294	Canis_familiaris
ENSIPUG00000008631	lsg1	99	64.848	ENSCAFG00020002216	LSG1	99	65.756	Canis_lupus_dingo
ENSIPUG00000008631	lsg1	100	64.561	ENSCHIG00000015769	LSG1	100	64.715	Capra_hircus
ENSIPUG00000008631	lsg1	99	64.103	ENSTSYG00000001447	LSG1	99	64.706	Carlito_syrichta
ENSIPUG00000008631	lsg1	94	65.789	ENSCAPG00000009856	LSG1	99	65.898	Cavia_aperea
ENSIPUG00000008631	lsg1	99	64.955	ENSCCAG00000035744	LSG1	99	64.653	Cebus_capucinus
ENSIPUG00000008631	lsg1	99	66.012	ENSCATG00000042060	LSG1	99	63.897	Cercocebus_atys
ENSIPUG00000008631	lsg1	99	65.350	ENSCSAG00000008796	LSG1	92	65.198	Chlorocebus_sabaeus
ENSIPUG00000008631	lsg1	100	66.717	ENSCPBG00000015941	LSG1	83	67.171	Chrysemys_picta_bellii
ENSIPUG00000008631	lsg1	84	48.399	ENSCING00000007079	-	100	48.399	Ciona_intestinalis
ENSIPUG00000008631	lsg1	85	50.929	ENSCSAVG00000002514	-	99	50.929	Ciona_savignyi
ENSIPUG00000008631	lsg1	99	65.008	ENSCANG00000030709	LSG1	99	65.106	Colobus_angolensis_palliatus
ENSIPUG00000008631	lsg1	99	65.421	ENSCGRG00001019846	Lsg1	99	65.674	Cricetulus_griseus_chok1gshd
ENSIPUG00000008631	lsg1	99	65.184	ENSCGRG00000014617	Lsg1	99	65.586	Cricetulus_griseus_crigri
ENSIPUG00000008631	lsg1	98	73.059	ENSCSEG00000008522	lsg1	100	73.011	Cynoglossus_semilaevis
ENSIPUG00000008631	lsg1	97	74.472	ENSCVAG00000002484	lsg1	100	74.684	Cyprinodon_variegatus
ENSIPUG00000008631	lsg1	100	78.516	ENSDARG00000015352	lsg1	100	79.219	Danio_rerio
ENSIPUG00000008631	lsg1	99	64.536	ENSDNOG00000006224	LSG1	99	64.536	Dasypus_novemcinctus
ENSIPUG00000008631	lsg1	99	49.369	FBgn0266284	Ns3	99	48.899	Drosophila_melanogaster
ENSIPUG00000008631	lsg1	88	71.053	ENSETEG00000003888	LSG1	89	71.053	Echinops_telfairi
ENSIPUG00000008631	lsg1	88	57.612	ENSEBUG00000003119	lsg1	85	57.019	Eptatretus_burgeri
ENSIPUG00000008631	lsg1	99	64.947	ENSEASG00005000678	LSG1	99	64.643	Equus_asinus_asinus
ENSIPUG00000008631	lsg1	99	64.795	ENSECAG00000017659	LSG1	99	64.643	Equus_caballus
ENSIPUG00000008631	lsg1	86	62.393	ENSEEUG00000015217	LSG1	87	62.393	Erinaceus_europaeus
ENSIPUG00000008631	lsg1	100	71.205	ENSELUG00000023973	lsg1	100	71.429	Esox_lucius
ENSIPUG00000008631	lsg1	100	63.746	ENSFCAG00000024957	LSG1	100	64.502	Felis_catus
ENSIPUG00000008631	lsg1	92	62.215	ENSFALG00000007210	LSG1	94	62.866	Ficedula_albicollis
ENSIPUG00000008631	lsg1	99	64.596	ENSFDAG00000017373	LSG1	99	64.596	Fukomys_damarensis
ENSIPUG00000008631	lsg1	97	73.206	ENSFHEG00000003680	lsg1	100	73.364	Fundulus_heteroclitus
ENSIPUG00000008631	lsg1	98	69.010	ENSGMOG00000015834	lsg1	100	69.375	Gadus_morhua
ENSIPUG00000008631	lsg1	99	60.241	ENSGALG00000007058	LSG1	87	60.272	Gallus_gallus
ENSIPUG00000008631	lsg1	97	74.430	ENSGAFG00000015831	lsg1	100	73.302	Gambusia_affinis
ENSIPUG00000008631	lsg1	98	72.152	ENSGACG00000009323	lsg1	100	72.136	Gasterosteus_aculeatus
ENSIPUG00000008631	lsg1	99	65.198	ENSGGOG00000000520	LSG1	99	65.198	Gorilla_gorilla
ENSIPUG00000008631	lsg1	100	74.264	ENSHBUG00000005659	lsg1	100	73.953	Haplochromis_burtoni
ENSIPUG00000008631	lsg1	99	63.509	ENSHGLG00000017390	LSG1	99	64.142	Heterocephalus_glaber_female
ENSIPUG00000008631	lsg1	99	63.509	ENSHGLG00100018587	LSG1	99	64.142	Heterocephalus_glaber_male
ENSIPUG00000008631	lsg1	97	73.844	ENSHCOG00000016848	lsg1	100	71.851	Hippocampus_comes
ENSIPUG00000008631	lsg1	75	59.245	ENSSTOG00000010234	LSG1	92	59.245	Ictidomys_tridecemlineatus
ENSIPUG00000008631	lsg1	99	65.884	ENSJJAG00000015513	Lsg1	99	65.884	Jaculus_jaculus
ENSIPUG00000008631	lsg1	98	71.750	ENSKMAG00000009681	lsg1	100	72.425	Kryptolebias_marmoratus
ENSIPUG00000008631	lsg1	98	73.984	ENSLBEG00000024261	lsg1	100	73.968	Labrus_bergylta
ENSIPUG00000008631	lsg1	100	66.767	ENSLACG00000013399	LSG1	100	67.218	Latimeria_chalumnae
ENSIPUG00000008631	lsg1	98	71.384	ENSLOCG00000004918	lsg1	100	71.385	Lepisosteus_oculatus
ENSIPUG00000008631	lsg1	99	64.451	ENSLAFG00000012919	-	99	64.815	Loxodonta_africana
ENSIPUG00000008631	lsg1	99	65.653	ENSMFAG00000039903	LSG1	99	63.830	Macaca_fascicularis
ENSIPUG00000008631	lsg1	99	65.653	ENSMMUG00000010708	LSG1	99	65.350	Macaca_mulatta
ENSIPUG00000008631	lsg1	99	65.653	ENSMNEG00000031538	LSG1	99	63.830	Macaca_nemestrina
ENSIPUG00000008631	lsg1	99	65.502	ENSMLEG00000041184	LSG1	99	65.198	Mandrillus_leucophaeus
ENSIPUG00000008631	lsg1	100	71.969	ENSMAMG00000000470	lsg1	100	71.969	Mastacembelus_armatus
ENSIPUG00000008631	lsg1	100	74.419	ENSMZEG00005017865	lsg1	100	74.109	Maylandia_zebra
ENSIPUG00000008631	lsg1	88	62.542	ENSMGAG00000007050	LSG1	99	62.755	Meleagris_gallopavo
ENSIPUG00000008631	lsg1	93	63.591	ENSMAUG00000016976	Lsg1	94	63.744	Mesocricetus_auratus
ENSIPUG00000008631	lsg1	99	64.350	ENSMICG00000049087	LSG1	99	64.545	Microcebus_murinus
ENSIPUG00000008631	lsg1	99	64.625	ENSMOCG00000022136	Lsg1	99	65.331	Microtus_ochrogaster
ENSIPUG00000008631	lsg1	98	72.358	ENSMMOG00000008884	lsg1	100	72.973	Mola_mola
ENSIPUG00000008631	lsg1	99	56.124	ENSMODG00000019828	LSG1	99	55.969	Monodelphis_domestica
ENSIPUG00000008631	lsg1	100	66.099	MGP_CAROLIEiJ_G0020648	Lsg1	100	66.254	Mus_caroli
ENSIPUG00000008631	lsg1	100	66.409	ENSMUSG00000022538	Lsg1	100	66.718	Mus_musculus
ENSIPUG00000008631	lsg1	98	65.361	MGP_PahariEiJ_G0016352	Lsg1	100	65.846	Mus_pahari
ENSIPUG00000008631	lsg1	100	66.409	MGP_SPRETEiJ_G0021544	Lsg1	100	66.873	Mus_spretus
ENSIPUG00000008631	lsg1	100	64.297	ENSMPUG00000003734	LSG1	100	64.145	Mustela_putorius_furo
ENSIPUG00000008631	lsg1	100	65.191	ENSMLUG00000012548	LSG1	100	64.885	Myotis_lucifugus
ENSIPUG00000008631	lsg1	99	63.820	ENSNGAG00000021872	Lsg1	99	64.087	Nannospalax_galili
ENSIPUG00000008631	lsg1	99	65.303	ENSNLEG00000008293	LSG1	99	65.455	Nomascus_leucogenys
ENSIPUG00000008631	lsg1	70	73.196	ENSMEUG00000009041	-	84	73.196	Notamacropus_eugenii
ENSIPUG00000008631	lsg1	100	73.394	ENSONIG00000002635	lsg1	100	74.000	Oreochromis_niloticus
ENSIPUG00000008631	lsg1	95	67.747	ENSOANG00000012742	LSG1	99	67.423	Ornithorhynchus_anatinus
ENSIPUG00000008631	lsg1	99	64.706	ENSOCUG00000004817	LSG1	99	64.857	Oryctolagus_cuniculus
ENSIPUG00000008631	lsg1	98	71.475	ENSORLG00000007695	lsg1	100	70.892	Oryzias_latipes
ENSIPUG00000008631	lsg1	98	71.753	ENSORLG00020016286	lsg1	100	71.746	Oryzias_latipes_hni
ENSIPUG00000008631	lsg1	98	71.475	ENSORLG00015012025	lsg1	100	71.315	Oryzias_latipes_hsok
ENSIPUG00000008631	lsg1	98	71.151	ENSOMEG00000022379	lsg1	100	70.405	Oryzias_melastigma
ENSIPUG00000008631	lsg1	99	64.521	ENSOGAG00000003475	LSG1	99	64.671	Otolemur_garnettii
ENSIPUG00000008631	lsg1	100	63.927	ENSOARG00000020403	LSG1	100	64.536	Ovis_aries
ENSIPUG00000008631	lsg1	99	65.512	ENSPPAG00000029271	LSG1	99	65.402	Pan_paniscus
ENSIPUG00000008631	lsg1	100	62.930	ENSPPRG00000010281	LSG1	100	63.677	Panthera_pardus
ENSIPUG00000008631	lsg1	100	63.595	ENSPTIG00000010789	LSG1	100	64.350	Panthera_tigris_altaica
ENSIPUG00000008631	lsg1	99	65.361	ENSPTRG00000015760	LSG1	99	65.250	Pan_troglodytes
ENSIPUG00000008631	lsg1	99	66.012	ENSPANG00000018249	LSG1	99	63.897	Papio_anubis
ENSIPUG00000008631	lsg1	99	73.270	ENSPKIG00000002895	lsg1	99	72.956	Paramormyrops_kingsleyae
ENSIPUG00000008631	lsg1	96	62.888	ENSPSIG00000009821	LSG1	99	62.539	Pelodiscus_sinensis
ENSIPUG00000008631	lsg1	95	73.013	ENSPMGG00000000931	lsg1	100	73.013	Periophthalmus_magnuspinnatus
ENSIPUG00000008631	lsg1	99	65.291	ENSPEMG00000012082	-	99	64.679	Peromyscus_maniculatus_bairdii
ENSIPUG00000008631	lsg1	99	62.725	ENSPMAG00000007451	lsg1	99	61.584	Petromyzon_marinus
ENSIPUG00000008631	lsg1	100	65.128	ENSPCIG00000013890	LSG1	82	65.128	Phascolarctos_cinereus
ENSIPUG00000008631	lsg1	97	73.440	ENSPFOG00000021882	lsg1	100	73.354	Poecilia_formosa
ENSIPUG00000008631	lsg1	97	72.800	ENSPLAG00000019536	lsg1	100	72.727	Poecilia_latipinna
ENSIPUG00000008631	lsg1	97	72.568	ENSPMEG00000017281	lsg1	100	72.500	Poecilia_mexicana
ENSIPUG00000008631	lsg1	97	63.465	ENSPREG00000006048	lsg1	100	63.441	Poecilia_reticulata
ENSIPUG00000008631	lsg1	92	64.356	ENSPPYG00000014425	LSG1	100	64.521	Pongo_abelii
ENSIPUG00000008631	lsg1	89	71.053	ENSPCAG00000005511	LSG1	90	71.053	Procavia_capensis
ENSIPUG00000008631	lsg1	99	64.036	ENSPCOG00000012360	LSG1	99	64.297	Propithecus_coquereli
ENSIPUG00000008631	lsg1	100	73.201	ENSPNYG00000021994	lsg1	100	72.894	Pundamilia_nyererei
ENSIPUG00000008631	lsg1	100	81.677	ENSPNAG00000015533	lsg1	100	81.056	Pygocentrus_nattereri
ENSIPUG00000008631	lsg1	100	64.492	ENSRNOG00000001727	Lsg1	100	65.549	Rattus_norvegicus
ENSIPUG00000008631	lsg1	99	64.902	ENSRBIG00000029053	LSG1	99	65.204	Rhinopithecus_bieti
ENSIPUG00000008631	lsg1	99	64.902	ENSRROG00000037702	LSG1	99	65.204	Rhinopithecus_roxellana
ENSIPUG00000008631	lsg1	81	41.948	YGL099W	LSG1	74	42.135	Saccharomyces_cerevisiae
ENSIPUG00000008631	lsg1	99	65.361	ENSSBOG00000034938	LSG1	99	65.361	Saimiri_boliviensis_boliviensis
ENSIPUG00000008631	lsg1	77	63.532	ENSSHAG00000003487	LSG1	100	63.532	Sarcophilus_harrisii
ENSIPUG00000008631	lsg1	98	73.802	ENSSFOG00015008955	lsg1	100	74.531	Scleropages_formosus
ENSIPUG00000008631	lsg1	98	75.436	ENSSDUG00000004622	lsg1	100	74.884	Seriola_dumerili
ENSIPUG00000008631	lsg1	98	76.252	ENSSLDG00000010869	lsg1	100	75.791	Seriola_lalandi_dorsalis
ENSIPUG00000008631	lsg1	83	65.507	ENSSARG00000012981	LSG1	83	63.788	Sorex_araneus
ENSIPUG00000008631	lsg1	100	64.885	ENSSPUG00000016347	LSG1	100	64.885	Sphenodon_punctatus
ENSIPUG00000008631	lsg1	100	73.817	ENSSPAG00000005508	lsg1	100	73.975	Stegastes_partitus
ENSIPUG00000008631	lsg1	100	63.790	ENSSSCG00000011827	LSG1	100	64.099	Sus_scrofa
ENSIPUG00000008631	lsg1	88	60.100	ENSTGUG00000009068	LSG1	99	60.943	Taeniopygia_guttata
ENSIPUG00000008631	lsg1	97	69.677	ENSTRUG00000017380	lsg1	100	69.716	Takifugu_rubripes
ENSIPUG00000008631	lsg1	97	74.637	ENSTNIG00000015570	lsg1	100	74.686	Tetraodon_nigroviridis
ENSIPUG00000008631	lsg1	91	73.333	ENSTTRG00000000559	LSG1	91	73.333	Tursiops_truncatus
ENSIPUG00000008631	lsg1	100	64.145	ENSUAMG00000012454	LSG1	100	63.540	Ursus_americanus
ENSIPUG00000008631	lsg1	100	64.145	ENSUMAG00000000855	LSG1	100	63.540	Ursus_maritimus
ENSIPUG00000008631	lsg1	95	62.184	ENSVPAG00000012400	LSG1	100	62.063	Vicugna_pacos
ENSIPUG00000008631	lsg1	96	65.032	ENSVVUG00000008956	LSG1	99	64.055	Vulpes_vulpes
ENSIPUG00000008631	lsg1	100	66.003	ENSXETG00000003451	lsg1	100	65.745	Xenopus_tropicalis
ENSIPUG00000008631	lsg1	97	73.151	ENSXCOG00000003239	lsg1	100	72.457	Xiphophorus_couchianus
ENSIPUG00000008631	lsg1	97	72.484	ENSXMAG00000005536	lsg1	100	71.787	Xiphophorus_maculatus