EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000008666 (Gene tree)
Gene ID: 108260929
Gene Symbol: zgc:55733
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 20357 bases
Position: chr29:7748751-7769107
Accession: 108260929
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000012776	RRM_1	PF00076.22	1.4e-13	1	1
ENSIPUP00000012722	RRM_1	PF00076.22	1.8e-13	1	1
ENSIPUP00000012732	RRM_1	PF00076.22	1.8e-13	1	1
ENSIPUP00000012751	RRM_1	PF00076.22	2.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000013270	-	1880	-	ENSIPUP00000012732	267 (aa)	-	-
ENSIPUT00000013259	-	1902	-	ENSIPUP00000012722	267 (aa)	-	-
ENSIPUT00000013314	-	678	-	ENSIPUP00000012776	225 (aa)	-	-
ENSIPUT00000013289	-	1785	XM_017461657	ENSIPUP00000012751	290 (aa)	XP_017317146	A0A2D0QEP9

Gene Model

Click here to download ENSIPUG00000008666's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000008666's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000008666	zgc:55733	94	83.256	ENSIPUG00000011271	hnrnpc	98	81.333
ENSIPUG00000008666	zgc:55733	98	56.485	ENSIPUG00000000507	ralyl	80	57.322

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000008666	zgc:55733	92	60.476	ENSG00000184672	RALYL	99	72.619	Homo_sapiens
ENSIPUG00000008666	zgc:55733	93	85.446	ENSAPOG00000006963	hnrnpc	86	79.848	Acanthochromis_polyacanthus
ENSIPUG00000008666	zgc:55733	94	82.326	ENSACIG00000000270	-	99	75.191	Amphilophus_citrinellus
ENSIPUG00000008666	zgc:55733	94	80.000	ENSACIG00000016568	-	86	81.116	Amphilophus_citrinellus
ENSIPUG00000008666	zgc:55733	93	85.446	ENSAOCG00000003896	-	86	79.468	Amphiprion_ocellaris
ENSIPUG00000008666	zgc:55733	95	79.263	ENSAOCG00000021616	-	82	79.545	Amphiprion_ocellaris
ENSIPUG00000008666	zgc:55733	93	85.446	ENSAPEG00000001489	-	86	79.468	Amphiprion_percula
ENSIPUG00000008666	zgc:55733	94	79.535	ENSAPEG00000019962	-	85	79.924	Amphiprion_percula
ENSIPUG00000008666	zgc:55733	94	82.160	ENSATEG00000011734	-	92	78.445	Anabas_testudineus
ENSIPUG00000008666	zgc:55733	95	80.184	ENSATEG00000018006	-	80	85.780	Anabas_testudineus
ENSIPUG00000008666	zgc:55733	96	54.393	ENSAPLG00000015574	RALYL	81	56.067	Anas_platyrhynchos
ENSIPUG00000008666	zgc:55733	98	53.279	ENSACAG00000028464	RALYL	80	55.230	Anolis_carolinensis
ENSIPUG00000008666	zgc:55733	92	60.476	ENSANAG00000023383	RALYL	81	55.844	Aotus_nancymaae
ENSIPUG00000008666	zgc:55733	94	80.093	ENSACLG00000005707	-	89	80.451	Astatotilapia_calliptera
ENSIPUG00000008666	zgc:55733	94	83.028	ENSACLG00000000995	-	86	78.788	Astatotilapia_calliptera
ENSIPUG00000008666	zgc:55733	91	84.541	ENSACLG00000013636	-	88	78.409	Astatotilapia_calliptera
ENSIPUG00000008666	zgc:55733	84	76.596	ENSAMXG00000042946	hnrnpc	98	76.440	Astyanax_mexicanus
ENSIPUG00000008666	zgc:55733	94	92.958	ENSAMXG00000034915	zgc:55733	91	91.566	Astyanax_mexicanus
ENSIPUG00000008666	zgc:55733	92	60.000	ENSCJAG00000000402	RALYL	81	56.277	Callithrix_jacchus
ENSIPUG00000008666	zgc:55733	99	51.587	ENSCPOG00000012314	RALYL	82	53.306	Cavia_porcellus
ENSIPUG00000008666	zgc:55733	92	60.476	ENSCCAG00000025003	RALYL	82	72.619	Cebus_capucinus
ENSIPUG00000008666	zgc:55733	92	60.476	ENSCATG00000042145	RALYL	81	56.277	Cercocebus_atys
ENSIPUG00000008666	zgc:55733	93	54.425	ENSCLAG00000005228	RALYL	82	53.306	Chinchilla_lanigera
ENSIPUG00000008666	zgc:55733	92	55.157	ENSCHOG00000013228	RALYL	75	53.478	Choloepus_hoffmanni
ENSIPUG00000008666	zgc:55733	92	60.476	ENSCANG00000039144	RALYL	81	56.277	Colobus_angolensis_palliatus
ENSIPUG00000008666	zgc:55733	92	56.951	ENSCGRG00001009241	Ralyl	82	53.086	Cricetulus_griseus_chok1gshd
ENSIPUG00000008666	zgc:55733	94	76.852	ENSCSEG00000021349	-	82	76.172	Cynoglossus_semilaevis
ENSIPUG00000008666	zgc:55733	95	72.350	ENSCSEG00000019769	-	75	76.471	Cynoglossus_semilaevis
ENSIPUG00000008666	zgc:55733	93	68.224	ENSCVAG00000002797	-	82	64.876	Cyprinodon_variegatus
ENSIPUG00000008666	zgc:55733	99	76.724	ENSCVAG00000016981	-	98	69.375	Cyprinodon_variegatus
ENSIPUG00000008666	zgc:55733	99	78.855	ENSDARG00000053810	hnrnpc	82	80.233	Danio_rerio
ENSIPUG00000008666	zgc:55733	100	88.660	ENSDARG00000103845	zgc:55733	100	89.691	Danio_rerio
ENSIPUG00000008666	zgc:55733	92	57.399	ENSDORG00000003721	Ralyl	82	53.909	Dipodomys_ordii
ENSIPUG00000008666	zgc:55733	72	57.225	ENSETEG00000014028	RALYL	94	57.297	Echinops_telfairi
ENSIPUG00000008666	zgc:55733	93	46.835	ENSEBUG00000012363	hnrnpc	67	50.000	Eptatretus_burgeri
ENSIPUG00000008666	zgc:55733	91	50.235	ENSEBUG00000006049	RALYL	78	48.444	Eptatretus_burgeri
ENSIPUG00000008666	zgc:55733	93	54.185	ENSEEUG00000007202	RALYL	83	53.909	Erinaceus_europaeus
ENSIPUG00000008666	zgc:55733	96	79.909	ENSELUG00000007714	-	92	76.580	Esox_lucius
ENSIPUG00000008666	zgc:55733	94	83.333	ENSELUG00000004132	-	91	78.358	Esox_lucius
ENSIPUG00000008666	zgc:55733	92	58.962	ENSFALG00000008647	RALYL	99	58.447	Ficedula_albicollis
ENSIPUG00000008666	zgc:55733	93	80.465	ENSFHEG00000003605	-	86	75.000	Fundulus_heteroclitus
ENSIPUG00000008666	zgc:55733	95	75.107	ENSFHEG00000007278	-	82	73.606	Fundulus_heteroclitus
ENSIPUG00000008666	zgc:55733	52	87.500	ENSGMOG00000010344	-	57	87.654	Gadus_morhua
ENSIPUG00000008666	zgc:55733	52	88.750	ENSGMOG00000013154	-	56	88.750	Gadus_morhua
ENSIPUG00000008666	zgc:55733	96	57.456	ENSGALG00000036938	RALYL	80	56.067	Gallus_gallus
ENSIPUG00000008666	zgc:55733	100	74.249	ENSGAFG00000020992	-	78	84.722	Gambusia_affinis
ENSIPUG00000008666	zgc:55733	95	80.000	ENSGAFG00000020486	-	100	69.888	Gambusia_affinis
ENSIPUG00000008666	zgc:55733	98	70.404	ENSGACG00000018932	-	89	72.398	Gasterosteus_aculeatus
ENSIPUG00000008666	zgc:55733	95	79.186	ENSGACG00000017772	-	97	77.075	Gasterosteus_aculeatus
ENSIPUG00000008666	zgc:55733	92	60.476	ENSGGOG00000000841	RALYL	81	56.277	Gorilla_gorilla
ENSIPUG00000008666	zgc:55733	94	79.724	ENSHBUG00000010527	-	83	80.451	Haplochromis_burtoni
ENSIPUG00000008666	zgc:55733	91	85.024	ENSHBUG00000018342	-	86	79.167	Haplochromis_burtoni
ENSIPUG00000008666	zgc:55733	93	53.982	ENSHGLG00000004866	RALYL	82	52.893	Heterocephalus_glaber_female
ENSIPUG00000008666	zgc:55733	93	53.982	ENSHGLG00100017480	RALYL	82	52.893	Heterocephalus_glaber_male
ENSIPUG00000008666	zgc:55733	93	77.093	ENSHCOG00000012333	hnrnpc	90	75.000	Hippocampus_comes
ENSIPUG00000008666	zgc:55733	92	56.951	ENSSTOG00000012583	RALYL	83	53.498	Ictidomys_tridecemlineatus
ENSIPUG00000008666	zgc:55733	92	81.731	ENSKMAG00000011170	-	85	79.310	Kryptolebias_marmoratus
ENSIPUG00000008666	zgc:55733	94	79.167	ENSKMAG00000018265	-	83	79.623	Kryptolebias_marmoratus
ENSIPUG00000008666	zgc:55733	93	83.568	ENSLBEG00000006979	-	75	83.105	Labrus_bergylta
ENSIPUG00000008666	zgc:55733	94	81.395	ENSLBEG00000006193	-	83	79.924	Labrus_bergylta
ENSIPUG00000008666	zgc:55733	94	77.679	ENSLBEG00000024418	-	86	71.429	Labrus_bergylta
ENSIPUG00000008666	zgc:55733	92	72.477	ENSLOCG00000002560	hnrnpc	91	71.483	Lepisosteus_oculatus
ENSIPUG00000008666	zgc:55733	92	60.476	ENSMNEG00000033288	RALYL	81	56.277	Macaca_nemestrina
ENSIPUG00000008666	zgc:55733	92	60.476	ENSMLEG00000038284	RALYL	81	56.277	Mandrillus_leucophaeus
ENSIPUG00000008666	zgc:55733	93	79.907	ENSMAMG00000008033	-	89	81.203	Mastacembelus_armatus
ENSIPUG00000008666	zgc:55733	93	86.730	ENSMAMG00000012236	-	84	82.239	Mastacembelus_armatus
ENSIPUG00000008666	zgc:55733	94	80.093	ENSMZEG00005024249	-	83	80.451	Maylandia_zebra
ENSIPUG00000008666	zgc:55733	95	82.727	ENSMZEG00005020460	-	86	78.788	Maylandia_zebra
ENSIPUG00000008666	zgc:55733	92	56.951	ENSMAUG00000015149	Ralyl	82	53.086	Mesocricetus_auratus
ENSIPUG00000008666	zgc:55733	93	56.744	ENSMICG00000005558	RALYL	85	72.619	Microcebus_murinus
ENSIPUG00000008666	zgc:55733	92	56.951	ENSMOCG00000017371	Ralyl	81	53.112	Microtus_ochrogaster
ENSIPUG00000008666	zgc:55733	94	85.446	ENSMMOG00000021465	-	91	79.615	Mola_mola
ENSIPUG00000008666	zgc:55733	93	79.621	ENSMMOG00000019520	-	99	74.708	Mola_mola
ENSIPUG00000008666	zgc:55733	94	83.645	ENSMALG00000014623	-	83	79.389	Monopterus_albus
ENSIPUG00000008666	zgc:55733	92	78.199	ENSMALG00000007520	-	84	75.620	Monopterus_albus
ENSIPUG00000008666	zgc:55733	92	56.502	ENSMUSG00000039717	Ralyl	99	71.429	Mus_musculus
ENSIPUG00000008666	zgc:55733	93	56.828	ENSMPUG00000010724	RALYL	82	52.263	Mustela_putorius_furo
ENSIPUG00000008666	zgc:55733	92	56.951	ENSNGAG00000013375	Ralyl	82	53.498	Nannospalax_galili
ENSIPUG00000008666	zgc:55733	93	84.259	ENSNBRG00000004912	-	95	79.825	Neolamprologus_brichardi
ENSIPUG00000008666	zgc:55733	100	77.293	ENSNBRG00000015676	-	81	82.609	Neolamprologus_brichardi
ENSIPUG00000008666	zgc:55733	92	60.476	ENSNLEG00000002702	RALYL	77	56.277	Nomascus_leucogenys
ENSIPUG00000008666	zgc:55733	78	51.832	ENSOPRG00000013650	-	98	48.990	Ochotona_princeps
ENSIPUG00000008666	zgc:55733	92	56.306	ENSODEG00000001012	RALYL	81	53.750	Octodon_degus
ENSIPUG00000008666	zgc:55733	91	85.990	ENSONIG00000007859	-	93	77.037	Oreochromis_niloticus
ENSIPUG00000008666	zgc:55733	94	79.724	ENSONIG00000018350	-	83	80.827	Oreochromis_niloticus
ENSIPUG00000008666	zgc:55733	92	75.234	ENSORLG00000009999	-	85	70.881	Oryzias_latipes
ENSIPUG00000008666	zgc:55733	94	76.233	ENSORLG00000003144	-	82	76.471	Oryzias_latipes
ENSIPUG00000008666	zgc:55733	92	74.766	ENSORLG00020018228	hnrnpc	85	70.498	Oryzias_latipes_hni
ENSIPUG00000008666	zgc:55733	92	75.234	ENSORLG00015019755	-	85	70.881	Oryzias_latipes_hsok
ENSIPUG00000008666	zgc:55733	94	76.233	ENSORLG00015009460	-	99	69.486	Oryzias_latipes_hsok
ENSIPUG00000008666	zgc:55733	92	76.636	ENSOMEG00000020488	-	85	72.031	Oryzias_melastigma
ENSIPUG00000008666	zgc:55733	94	80.093	ENSOMEG00000022665	-	83	80.377	Oryzias_melastigma
ENSIPUG00000008666	zgc:55733	92	60.476	ENSPPAG00000038705	RALYL	81	56.277	Pan_paniscus
ENSIPUG00000008666	zgc:55733	93	60.369	ENSPPRG00000018612	RALYL	81	55.365	Panthera_pardus
ENSIPUG00000008666	zgc:55733	93	60.369	ENSPTIG00000020331	RALYL	81	55.365	Panthera_tigris_altaica
ENSIPUG00000008666	zgc:55733	92	60.476	ENSPTRG00000020381	RALYL	81	56.277	Pan_troglodytes
ENSIPUG00000008666	zgc:55733	92	60.476	ENSPANG00000029305	RALYL	81	56.277	Papio_anubis
ENSIPUG00000008666	zgc:55733	94	83.945	ENSPKIG00000022837	-	89	79.078	Paramormyrops_kingsleyae
ENSIPUG00000008666	zgc:55733	100	77.966	ENSPKIG00000008592	-	91	77.778	Paramormyrops_kingsleyae
ENSIPUG00000008666	zgc:55733	95	54.661	ENSPSIG00000011135	RALYL	81	52.066	Pelodiscus_sinensis
ENSIPUG00000008666	zgc:55733	97	73.214	ENSPMGG00000017774	-	97	64.655	Periophthalmus_magnuspinnatus
ENSIPUG00000008666	zgc:55733	95	83.333	ENSPMGG00000013144	-	83	83.871	Periophthalmus_magnuspinnatus
ENSIPUG00000008666	zgc:55733	92	56.951	ENSPEMG00000016447	Ralyl	82	53.086	Peromyscus_maniculatus_bairdii
ENSIPUG00000008666	zgc:55733	92	55.357	ENSPMAG00000002407	RALYL	99	55.217	Petromyzon_marinus
ENSIPUG00000008666	zgc:55733	91	78.947	ENSPFOG00000001583	-	85	74.713	Poecilia_formosa
ENSIPUG00000008666	zgc:55733	99	74.783	ENSPFOG00000002643	-	91	73.630	Poecilia_formosa
ENSIPUG00000008666	zgc:55733	99	74.783	ENSPLAG00000000061	-	90	73.630	Poecilia_latipinna
ENSIPUG00000008666	zgc:55733	91	78.846	ENSPLAG00000015305	-	85	74.231	Poecilia_latipinna
ENSIPUG00000008666	zgc:55733	99	74.783	ENSPMEG00000016524	-	91	72.945	Poecilia_mexicana
ENSIPUG00000008666	zgc:55733	91	80.288	ENSPMEG00000004802	-	85	75.000	Poecilia_mexicana
ENSIPUG00000008666	zgc:55733	99	73.913	ENSPREG00000001852	-	88	77.273	Poecilia_reticulata
ENSIPUG00000008666	zgc:55733	91	78.846	ENSPREG00000007928	-	81	76.210	Poecilia_reticulata
ENSIPUG00000008666	zgc:55733	92	48.309	ENSPPYG00000018710	-	77	45.536	Pongo_abelii
ENSIPUG00000008666	zgc:55733	99	51.020	ENSPVAG00000010821	RALYL	87	50.192	Pteropus_vampyrus
ENSIPUG00000008666	zgc:55733	92	84.211	ENSPNYG00000020293	-	87	79.528	Pundamilia_nyererei
ENSIPUG00000008666	zgc:55733	99	77.974	ENSPNYG00000003747	-	89	80.451	Pundamilia_nyererei
ENSIPUG00000008666	zgc:55733	99	75.758	ENSPNAG00000015686	hnrnpc	89	80.233	Pygocentrus_nattereri
ENSIPUG00000008666	zgc:55733	94	88.182	ENSPNAG00000019200	zgc:55733	91	86.545	Pygocentrus_nattereri
ENSIPUG00000008666	zgc:55733	92	60.476	ENSRROG00000023925	RALYL	87	70.930	Rhinopithecus_roxellana
ENSIPUG00000008666	zgc:55733	100	78.879	ENSSFOG00015012924	-	81	95.000	Scleropages_formosus
ENSIPUG00000008666	zgc:55733	100	79.565	ENSSFOG00015012015	-	82	86.047	Scleropages_formosus
ENSIPUG00000008666	zgc:55733	99	77.130	ENSSMAG00000013592	-	84	78.077	Scophthalmus_maximus
ENSIPUG00000008666	zgc:55733	95	80.645	ENSSMAG00000011147	-	80	86.239	Scophthalmus_maximus
ENSIPUG00000008666	zgc:55733	95	80.556	ENSSDUG00000006730	-	84	81.749	Seriola_dumerili
ENSIPUG00000008666	zgc:55733	93	84.834	ENSSDUG00000001723	-	86	80.608	Seriola_dumerili
ENSIPUG00000008666	zgc:55733	95	80.093	ENSSLDG00000007474	-	91	81.369	Seriola_lalandi_dorsalis
ENSIPUG00000008666	zgc:55733	93	84.360	ENSSLDG00000007454	-	87	80.228	Seriola_lalandi_dorsalis
ENSIPUG00000008666	zgc:55733	65	73.469	ENSSARG00000002374	RALYL	83	43.882	Sorex_araneus
ENSIPUG00000008666	zgc:55733	93	83.333	ENSSPAG00000023204	-	86	80.608	Stegastes_partitus
ENSIPUG00000008666	zgc:55733	95	78.802	ENSSPAG00000013996	-	83	80.682	Stegastes_partitus
ENSIPUG00000008666	zgc:55733	96	54.852	ENSTGUG00000011689	RALYL	81	56.540	Taeniopygia_guttata
ENSIPUG00000008666	zgc:55733	95	79.724	ENSTRUG00000020158	-	83	75.794	Takifugu_rubripes
ENSIPUG00000008666	zgc:55733	91	78.199	ENSTNIG00000007427	-	84	72.868	Tetraodon_nigroviridis
ENSIPUG00000008666	zgc:55733	93	74.528	ENSTNIG00000000334	-	94	73.705	Tetraodon_nigroviridis
ENSIPUG00000008666	zgc:55733	92	49.333	ENSTBEG00000005551	RALYL	91	48.117	Tupaia_belangeri
ENSIPUG00000008666	zgc:55733	92	53.670	ENSTTRG00000015762	RALYL	81	51.261	Tursiops_truncatus
ENSIPUG00000008666	zgc:55733	92	55.450	ENSVPAG00000008501	RALYL	81	51.293	Vicugna_pacos
ENSIPUG00000008666	zgc:55733	92	72.642	ENSXCOG00000006552	-	81	70.518	Xiphophorus_couchianus
ENSIPUG00000008666	zgc:55733	67	85.000	ENSXCOG00000019434	-	98	71.915	Xiphophorus_couchianus
ENSIPUG00000008666	zgc:55733	99	73.913	ENSXMAG00000022849	-	86	77.273	Xiphophorus_maculatus
ENSIPUG00000008666	zgc:55733	92	79.439	ENSXMAG00000009333	-	85	74.615	Xiphophorus_maculatus