EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000008843 (Gene tree)
Gene ID: 100529040
Gene Symbol: tsp1l
Alias: -
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 13047 bases
Position: chr20:7438645-7451691
Accession: 100529040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000013049	RRM_1	PF00076.22	1.2e-28	1	2
ENSIPUP00000013049	RRM_1	PF00076.22	1.2e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000013592	-	5441	-	ENSIPUP00000013049	315 (aa)	-	E3TGL5

Gene Model

Click here to download ENSIPUG00000008843's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000008843's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000008843	tsp1l	53	30.233	ENSIPUG00000024951	hnrnpdl	54	30.233
ENSIPUG00000008843	tsp1l	76	30.526	ENSIPUG00000016702	tia1	77	30.114

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000008843	tsp1l	99	62.461	ENSAPOG00000010086	trnau1apb	99	63.492	Acanthochromis_polyacanthus
ENSIPUG00000008843	tsp1l	99	66.563	ENSACIG00000001863	trnau1apb	99	62.848	Amphilophus_citrinellus
ENSIPUG00000008843	tsp1l	99	66.667	ENSAOCG00000011891	trnau1apb	99	64.223	Amphiprion_ocellaris
ENSIPUG00000008843	tsp1l	99	63.174	ENSAPEG00000008029	trnau1apb	99	65.282	Amphiprion_percula
ENSIPUG00000008843	tsp1l	99	65.976	ENSATEG00000002196	trnau1apb	99	64.223	Anabas_testudineus
ENSIPUG00000008843	tsp1l	99	66.667	ENSACLG00000003016	trnau1apb	99	61.420	Astatotilapia_calliptera
ENSIPUG00000008843	tsp1l	99	90.764	ENSAMXG00000001805	trnau1apb	99	88.535	Astyanax_mexicanus
ENSIPUG00000008843	tsp1l	98	65.861	ENSCSEG00000018215	trnau1apb	97	64.371	Cynoglossus_semilaevis
ENSIPUG00000008843	tsp1l	95	59.878	ENSCVAG00000017866	trnau1apb	99	57.622	Cyprinodon_variegatus
ENSIPUG00000008843	tsp1l	100	83.861	ENSDARG00000056475	trnau1apb	98	83.175	Danio_rerio
ENSIPUG00000008843	tsp1l	99	78.616	ENSELUG00000016683	trnau1apb	98	79.874	Esox_lucius
ENSIPUG00000008843	tsp1l	99	62.500	ENSFHEG00000001267	trnau1apb	99	59.302	Fundulus_heteroclitus
ENSIPUG00000008843	tsp1l	99	62.840	ENSGMOG00000001160	trnau1apb	99	58.284	Gadus_morhua
ENSIPUG00000008843	tsp1l	57	85.475	ENSGAFG00000006770	trnau1apb	99	62.461	Gambusia_affinis
ENSIPUG00000008843	tsp1l	99	66.261	ENSGACG00000014944	trnau1apb	99	63.798	Gasterosteus_aculeatus
ENSIPUG00000008843	tsp1l	69	46.330	ENSGAGG00000022384	-	77	43.578	Gopherus_agassizii
ENSIPUG00000008843	tsp1l	99	66.172	ENSHBUG00000018944	trnau1apb	99	63.529	Haplochromis_burtoni
ENSIPUG00000008843	tsp1l	71	72.727	ENSHCOG00000011350	trnau1apb	81	64.844	Hippocampus_comes
ENSIPUG00000008843	tsp1l	68	75.909	ENSKMAG00000010082	trnau1apb	99	60.234	Kryptolebias_marmoratus
ENSIPUG00000008843	tsp1l	99	67.267	ENSLBEG00000020480	trnau1apb	99	62.798	Labrus_bergylta
ENSIPUG00000008843	tsp1l	99	63.608	ENSLOCG00000013175	trnau1apb	98	64.127	Lepisosteus_oculatus
ENSIPUG00000008843	tsp1l	100	65.579	ENSMAMG00000012192	trnau1apb	99	60.000	Mastacembelus_armatus
ENSIPUG00000008843	tsp1l	99	66.172	ENSMZEG00005014852	trnau1apb	99	63.529	Maylandia_zebra
ENSIPUG00000008843	tsp1l	69	44.749	ENSMGAG00000003234	-	98	44.495	Meleagris_gallopavo
ENSIPUG00000008843	tsp1l	97	57.895	ENSMMOG00000021521	trnau1apb	100	54.493	Mola_mola
ENSIPUG00000008843	tsp1l	99	61.146	ENSMALG00000003772	trnau1apb	99	62.420	Monopterus_albus
ENSIPUG00000008843	tsp1l	98	67.391	ENSNBRG00000000751	trnau1apb	98	63.438	Neolamprologus_brichardi
ENSIPUG00000008843	tsp1l	99	63.950	ENSONIG00000016639	trnau1apb	99	60.692	Oreochromis_niloticus
ENSIPUG00000008843	tsp1l	63	80.000	ENSORLG00000013265	trnau1apb	99	65.507	Oryzias_latipes
ENSIPUG00000008843	tsp1l	99	65.588	ENSORLG00020004464	trnau1apb	99	65.889	Oryzias_latipes_hni
ENSIPUG00000008843	tsp1l	99	65.588	ENSORLG00015021098	trnau1apb	99	65.889	Oryzias_latipes_hsok
ENSIPUG00000008843	tsp1l	63	79.000	ENSOMEG00000016531	trnau1apb	99	66.377	Oryzias_melastigma
ENSIPUG00000008843	tsp1l	99	71.385	ENSPKIG00000007995	trnau1apb	98	71.385	Paramormyrops_kingsleyae
ENSIPUG00000008843	tsp1l	69	47.706	ENSPSIG00000004189	-	77	45.872	Pelodiscus_sinensis
ENSIPUG00000008843	tsp1l	99	58.013	ENSPMGG00000018509	trnau1apb	75	81.720	Periophthalmus_magnuspinnatus
ENSIPUG00000008843	tsp1l	99	65.217	ENSPFOG00000003938	trnau1apb	99	63.467	Poecilia_formosa
ENSIPUG00000008843	tsp1l	99	63.743	ENSPLAG00000015480	trnau1apb	99	59.544	Poecilia_latipinna
ENSIPUG00000008843	tsp1l	99	63.743	ENSPMEG00000012743	trnau1apb	99	59.544	Poecilia_mexicana
ENSIPUG00000008843	tsp1l	99	62.757	ENSPREG00000015035	trnau1apb	99	59.593	Poecilia_reticulata
ENSIPUG00000008843	tsp1l	99	64.220	ENSPNYG00000012127	trnau1apb	99	58.951	Pundamilia_nyererei
ENSIPUG00000008843	tsp1l	99	92.357	ENSPNAG00000019138	trnau1apb	98	92.357	Pygocentrus_nattereri
ENSIPUG00000008843	tsp1l	99	73.171	ENSSFOG00015014158	trnau1apb	98	74.085	Scleropages_formosus
ENSIPUG00000008843	tsp1l	98	66.061	ENSSMAG00000001745	trnau1apb	98	60.843	Scophthalmus_maximus
ENSIPUG00000008843	tsp1l	99	65.976	ENSSDUG00000011109	trnau1apb	99	64.244	Seriola_dumerili
ENSIPUG00000008843	tsp1l	99	65.976	ENSSLDG00000012947	trnau1apb	99	64.244	Seriola_lalandi_dorsalis
ENSIPUG00000008843	tsp1l	69	38.866	ENSSPUG00000016701	-	82	36.437	Sphenodon_punctatus
ENSIPUG00000008843	tsp1l	99	67.456	ENSSPAG00000006917	trnau1apb	99	64.516	Stegastes_partitus
ENSIPUG00000008843	tsp1l	99	62.130	ENSTRUG00000008608	trnau1apb	99	58.176	Takifugu_rubripes
ENSIPUG00000008843	tsp1l	99	59.561	ENSTNIG00000000916	trnau1apb	99	56.550	Tetraodon_nigroviridis
ENSIPUG00000008843	tsp1l	94	58.472	ENSXCOG00000007974	trnau1apb	93	59.603	Xiphophorus_couchianus
ENSIPUG00000008843	tsp1l	99	63.050	ENSXMAG00000029918	trnau1apb	99	59.884	Xiphophorus_maculatus