EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000008936 (Gene tree)
Gene ID: 108256903
Gene Symbol: lsm12a
Alias: zgc:85812
Full Name: protein LSM12 homolog A-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 8418 bases
Position: chr24:17635764-17644181
Accession: 108256903
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000013113	AD	PF09793.9	1.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000013657	-	5323	XM_017454162	ENSIPUP00000013113	195 (aa)	XP_017309651	A0A2D0PW49

Gene Model

Click here to download ENSIPUG00000008936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000008936's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000008936	lsm12a	99	82.474	ENSIPUG00000014800	lsm12	99	82.474

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000008936	lsm12a	99	75.773	ENSG00000161654	LSM12	99	75.773	Homo_sapiens
ENSIPUG00000008936	lsm12a	99	84.021	ENSAPOG00000007907	lsm12b	99	84.021	Acanthochromis_polyacanthus
ENSIPUG00000008936	lsm12a	99	74.112	ENSAMEG00000018321	LSM12	99	74.112	Ailuropoda_melanoleuca
ENSIPUG00000008936	lsm12a	99	82.990	ENSACIG00000008538	lsm12b	99	82.990	Amphilophus_citrinellus
ENSIPUG00000008936	lsm12a	99	84.021	ENSAOCG00000021847	lsm12b	87	84.021	Amphiprion_ocellaris
ENSIPUG00000008936	lsm12a	99	84.021	ENSAPEG00000002252	lsm12b	99	84.021	Amphiprion_percula
ENSIPUG00000008936	lsm12a	99	84.021	ENSATEG00000005705	lsm12b	99	84.021	Anabas_testudineus
ENSIPUG00000008936	lsm12a	99	73.196	ENSACAG00000004618	LSM12	99	73.196	Anolis_carolinensis
ENSIPUG00000008936	lsm12a	99	75.773	ENSANAG00000029011	LSM12	99	77.778	Aotus_nancymaae
ENSIPUG00000008936	lsm12a	99	83.505	ENSACLG00000026332	lsm12b	99	83.505	Astatotilapia_calliptera
ENSIPUG00000008936	lsm12a	99	82.474	ENSAMXG00000032952	lsm12b	99	82.474	Astyanax_mexicanus
ENSIPUG00000008936	lsm12a	100	82.653	ENSAMXG00000036117	lsm12a	91	82.653	Astyanax_mexicanus
ENSIPUG00000008936	lsm12a	99	75.773	ENSBTAG00000016252	LSM12	99	75.773	Bos_taurus
ENSIPUG00000008936	lsm12a	99	75.773	ENSCJAG00000048480	LSM12	99	77.778	Callithrix_jacchus
ENSIPUG00000008936	lsm12a	99	75.773	ENSCAFG00000014379	LSM12	91	75.773	Canis_familiaris
ENSIPUG00000008936	lsm12a	99	75.773	ENSCAFG00020012173	LSM12	99	75.773	Canis_lupus_dingo
ENSIPUG00000008936	lsm12a	99	75.773	ENSCHIG00000018175	LSM12	99	75.773	Capra_hircus
ENSIPUG00000008936	lsm12a	99	75.773	ENSTSYG00000036361	LSM12	99	75.773	Carlito_syrichta
ENSIPUG00000008936	lsm12a	82	71.875	ENSCAPG00000009647	LSM12	87	71.875	Cavia_aperea
ENSIPUG00000008936	lsm12a	99	75.258	ENSCPOG00000012860	LSM12	99	77.778	Cavia_porcellus
ENSIPUG00000008936	lsm12a	99	75.773	ENSCCAG00000032905	LSM12	99	77.778	Cebus_capucinus
ENSIPUG00000008936	lsm12a	99	75.773	ENSCATG00000030577	-	99	77.778	Cercocebus_atys
ENSIPUG00000008936	lsm12a	99	75.773	ENSCLAG00000015759	LSM12	99	77.778	Chinchilla_lanigera
ENSIPUG00000008936	lsm12a	99	75.773	ENSCSAG00000003486	LSM12	99	75.773	Chlorocebus_sabaeus
ENSIPUG00000008936	lsm12a	54	77.570	ENSCHOG00000001198	LSM12	98	77.570	Choloepus_hoffmanni
ENSIPUG00000008936	lsm12a	99	74.742	ENSCPBG00000027105	LSM12	99	74.742	Chrysemys_picta_bellii
ENSIPUG00000008936	lsm12a	99	75.773	ENSCANG00000043328	LSM12	99	77.778	Colobus_angolensis_palliatus
ENSIPUG00000008936	lsm12a	99	75.773	ENSCGRG00001002094	Lsm12	99	77.778	Cricetulus_griseus_chok1gshd
ENSIPUG00000008936	lsm12a	88	68.023	ENSCGRG00000004316	Lsm12	97	68.023	Cricetulus_griseus_crigri
ENSIPUG00000008936	lsm12a	99	84.536	ENSCSEG00000008434	lsm12b	99	84.536	Cynoglossus_semilaevis
ENSIPUG00000008936	lsm12a	99	83.505	ENSCVAG00000008755	lsm12b	99	83.505	Cyprinodon_variegatus
ENSIPUG00000008936	lsm12a	99	82.474	ENSDARG00000109510	lsm12b	99	82.474	Danio_rerio
ENSIPUG00000008936	lsm12a	99	77.835	ENSDARG00000028848	lsm12a	99	77.835	Danio_rerio
ENSIPUG00000008936	lsm12a	99	75.258	ENSDNOG00000002418	LSM12	90	75.258	Dasypus_novemcinctus
ENSIPUG00000008936	lsm12a	99	75.773	ENSDORG00000016381	Lsm12	99	77.778	Dipodomys_ordii
ENSIPUG00000008936	lsm12a	83	36.145	FBgn0030364	Lsm12	76	36.145	Drosophila_melanogaster
ENSIPUG00000008936	lsm12a	74	33.121	FBgn0036057	CG14164	83	33.121	Drosophila_melanogaster
ENSIPUG00000008936	lsm12a	99	75.258	ENSETEG00000008374	LSM12	99	75.258	Echinops_telfairi
ENSIPUG00000008936	lsm12a	87	65.497	ENSETEG00000011012	-	98	65.497	Echinops_telfairi
ENSIPUG00000008936	lsm12a	86	62.874	ENSEBUG00000016299	lsm12a	92	62.874	Eptatretus_burgeri
ENSIPUG00000008936	lsm12a	99	75.773	ENSEASG00005010155	LSM12	99	75.773	Equus_asinus_asinus
ENSIPUG00000008936	lsm12a	99	75.773	ENSECAG00000009071	LSM12	99	77.778	Equus_caballus
ENSIPUG00000008936	lsm12a	77	74.172	ENSEEUG00000002419	-	99	74.172	Erinaceus_europaeus
ENSIPUG00000008936	lsm12a	99	84.021	ENSELUG00000015538	lsm12b	99	79.381	Esox_lucius
ENSIPUG00000008936	lsm12a	99	80.928	ENSELUG00000000256	-	99	80.928	Esox_lucius
ENSIPUG00000008936	lsm12a	99	75.773	ENSFCAG00000037021	LSM12	99	75.773	Felis_catus
ENSIPUG00000008936	lsm12a	74	73.973	ENSFDAG00000008954	LSM12	85	73.973	Fukomys_damarensis
ENSIPUG00000008936	lsm12a	99	84.021	ENSFHEG00000019913	lsm12b	99	84.021	Fundulus_heteroclitus
ENSIPUG00000008936	lsm12a	79	82.692	ENSGMOG00000015449	lsm12b	99	82.692	Gadus_morhua
ENSIPUG00000008936	lsm12a	77	76.159	ENSGALG00000039803	LSM12	99	76.159	Gallus_gallus
ENSIPUG00000008936	lsm12a	99	84.021	ENSGAFG00000011829	lsm12b	99	84.021	Gambusia_affinis
ENSIPUG00000008936	lsm12a	79	82.051	ENSGACG00000003428	lsm12b	99	82.051	Gasterosteus_aculeatus
ENSIPUG00000008936	lsm12a	99	74.227	ENSGAGG00000021965	LSM12	99	74.227	Gopherus_agassizii
ENSIPUG00000008936	lsm12a	99	75.773	ENSGGOG00000010589	-	99	77.778	Gorilla_gorilla
ENSIPUG00000008936	lsm12a	86	84.431	ENSHBUG00000007667	lsm12b	74	84.431	Haplochromis_burtoni
ENSIPUG00000008936	lsm12a	99	75.773	ENSHGLG00000011411	LSM12	99	77.778	Heterocephalus_glaber_female
ENSIPUG00000008936	lsm12a	77	74.342	ENSHGLG00100000241	LSM12	81	74.342	Heterocephalus_glaber_male
ENSIPUG00000008936	lsm12a	99	81.443	ENSHCOG00000002094	lsm12b	99	81.443	Hippocampus_comes
ENSIPUG00000008936	lsm12a	99	75.773	ENSSTOG00000007403	LSM12	99	77.778	Ictidomys_tridecemlineatus
ENSIPUG00000008936	lsm12a	88	66.474	ENSJJAG00000011793	-	99	66.489	Jaculus_jaculus
ENSIPUG00000008936	lsm12a	76	67.785	ENSJJAG00000014652	-	89	67.785	Jaculus_jaculus
ENSIPUG00000008936	lsm12a	99	75.258	ENSJJAG00000004364	-	99	76.852	Jaculus_jaculus
ENSIPUG00000008936	lsm12a	86	85.629	ENSKMAG00000007704	lsm12b	56	85.629	Kryptolebias_marmoratus
ENSIPUG00000008936	lsm12a	99	83.505	ENSLBEG00000027999	lsm12b	99	83.505	Labrus_bergylta
ENSIPUG00000008936	lsm12a	99	77.320	ENSLACG00000015981	LSM12	99	77.320	Latimeria_chalumnae
ENSIPUG00000008936	lsm12a	99	80.412	ENSLOCG00000013079	lsm12b	98	80.412	Lepisosteus_oculatus
ENSIPUG00000008936	lsm12a	99	75.773	ENSLAFG00000005202	LSM12	99	75.773	Loxodonta_africana
ENSIPUG00000008936	lsm12a	99	75.773	ENSMFAG00000031376	LSM12	99	77.778	Macaca_fascicularis
ENSIPUG00000008936	lsm12a	99	75.773	ENSMMUG00000006804	LSM12	99	77.778	Macaca_mulatta
ENSIPUG00000008936	lsm12a	64	65.882	ENSMMUG00000042106	-	98	65.882	Macaca_mulatta
ENSIPUG00000008936	lsm12a	99	75.773	ENSMNEG00000030594	-	99	77.778	Macaca_nemestrina
ENSIPUG00000008936	lsm12a	99	75.773	ENSMLEG00000039934	LSM12	99	77.778	Mandrillus_leucophaeus
ENSIPUG00000008936	lsm12a	99	83.505	ENSMAMG00000004279	lsm12b	99	83.505	Mastacembelus_armatus
ENSIPUG00000008936	lsm12a	99	83.505	ENSMZEG00005005754	lsm12b	99	83.505	Maylandia_zebra
ENSIPUG00000008936	lsm12a	99	75.773	ENSMICG00000037219	LSM12	99	77.778	Microcebus_murinus
ENSIPUG00000008936	lsm12a	99	62.887	ENSMOCG00000017015	-	85	62.887	Microtus_ochrogaster
ENSIPUG00000008936	lsm12a	99	75.773	ENSMOCG00000019878	-	99	77.778	Microtus_ochrogaster
ENSIPUG00000008936	lsm12a	99	83.505	ENSMMOG00000020848	lsm12b	99	83.505	Mola_mola
ENSIPUG00000008936	lsm12a	99	83.505	ENSMALG00000007578	lsm12b	99	83.505	Monopterus_albus
ENSIPUG00000008936	lsm12a	99	75.258	MGP_CAROLIEiJ_G0017241	Lsm12	99	76.852	Mus_caroli
ENSIPUG00000008936	lsm12a	99	75.773	ENSMUSG00000020922	Lsm12	99	77.778	Mus_musculus
ENSIPUG00000008936	lsm12a	99	69.668	MGP_PahariEiJ_G0018371	Lsm12	99	77.778	Mus_pahari
ENSIPUG00000008936	lsm12a	99	75.258	MGP_SPRETEiJ_G0018084	Lsm12	98	78.302	Mus_spretus
ENSIPUG00000008936	lsm12a	99	75.258	ENSMLUG00000006391	LSM12	99	75.258	Myotis_lucifugus
ENSIPUG00000008936	lsm12a	99	54.500	ENSNGAG00000015429	-	99	54.500	Nannospalax_galili
ENSIPUG00000008936	lsm12a	99	75.773	ENSNGAG00000001870	Lsm12	99	77.778	Nannospalax_galili
ENSIPUG00000008936	lsm12a	99	83.505	ENSNBRG00000006266	lsm12b	99	83.505	Neolamprologus_brichardi
ENSIPUG00000008936	lsm12a	99	75.773	ENSNLEG00000005580	-	99	77.778	Nomascus_leucogenys
ENSIPUG00000008936	lsm12a	85	75.904	ENSMEUG00000007501	-	100	75.904	Notamacropus_eugenii
ENSIPUG00000008936	lsm12a	99	75.773	ENSOPRG00000008552	LSM12	99	75.773	Ochotona_princeps
ENSIPUG00000008936	lsm12a	100	68.367	ENSODEG00000007886	-	74	68.367	Octodon_degus
ENSIPUG00000008936	lsm12a	98	75.000	ENSODEG00000017998	-	98	77.778	Octodon_degus
ENSIPUG00000008936	lsm12a	99	83.505	ENSONIG00000007933	lsm12b	99	83.505	Oreochromis_niloticus
ENSIPUG00000008936	lsm12a	99	71.649	ENSOCUG00000021254	-	99	71.649	Oryctolagus_cuniculus
ENSIPUG00000008936	lsm12a	99	71.649	ENSOCUG00000027889	-	99	71.649	Oryctolagus_cuniculus
ENSIPUG00000008936	lsm12a	99	70.619	ENSOCUG00000024823	-	99	70.619	Oryctolagus_cuniculus
ENSIPUG00000008936	lsm12a	99	74.112	ENSOCUG00000008566	-	99	74.112	Oryctolagus_cuniculus
ENSIPUG00000008936	lsm12a	99	83.505	ENSORLG00000011310	lsm12b	99	83.505	Oryzias_latipes
ENSIPUG00000008936	lsm12a	99	83.505	ENSORLG00020002060	lsm12b	91	83.505	Oryzias_latipes_hni
ENSIPUG00000008936	lsm12a	99	83.505	ENSORLG00015001647	lsm12b	91	83.505	Oryzias_latipes_hsok
ENSIPUG00000008936	lsm12a	99	84.021	ENSOMEG00000006184	lsm12b	91	84.021	Oryzias_melastigma
ENSIPUG00000008936	lsm12a	99	75.773	ENSOGAG00000010489	LSM12	99	75.773	Otolemur_garnettii
ENSIPUG00000008936	lsm12a	99	73.000	ENSOARG00000006589	LSM12	99	73.000	Ovis_aries
ENSIPUG00000008936	lsm12a	99	66.495	ENSPPAG00000034974	-	99	66.495	Pan_paniscus
ENSIPUG00000008936	lsm12a	99	75.773	ENSPPRG00000023420	LSM12	99	75.773	Panthera_pardus
ENSIPUG00000008936	lsm12a	71	75.926	ENSPTIG00000014850	-	99	75.926	Panthera_tigris_altaica
ENSIPUG00000008936	lsm12a	77	74.834	ENSPTIG00000012704	-	81	74.834	Panthera_tigris_altaica
ENSIPUG00000008936	lsm12a	99	75.773	ENSPTRG00000009261	LSM12	99	77.778	Pan_troglodytes
ENSIPUG00000008936	lsm12a	99	75.773	ENSPANG00000021315	-	99	77.778	Papio_anubis
ENSIPUG00000008936	lsm12a	99	75.258	ENSPKIG00000017932	-	99	75.258	Paramormyrops_kingsleyae
ENSIPUG00000008936	lsm12a	99	81.959	ENSPKIG00000021058	lsm12b	99	81.959	Paramormyrops_kingsleyae
ENSIPUG00000008936	lsm12a	99	84.536	ENSPMGG00000021344	lsm12b	99	84.536	Periophthalmus_magnuspinnatus
ENSIPUG00000008936	lsm12a	99	75.773	ENSPEMG00000012199	Lsm12	99	77.778	Peromyscus_maniculatus_bairdii
ENSIPUG00000008936	lsm12a	90	65.341	ENSPMAG00000005461	lsm12a	100	65.341	Petromyzon_marinus
ENSIPUG00000008936	lsm12a	99	74.742	ENSPCIG00000020244	LSM12	99	74.742	Phascolarctos_cinereus
ENSIPUG00000008936	lsm12a	99	82.990	ENSPFOG00000015930	lsm12b	99	82.990	Poecilia_formosa
ENSIPUG00000008936	lsm12a	99	82.990	ENSPLAG00000021089	lsm12b	99	82.990	Poecilia_latipinna
ENSIPUG00000008936	lsm12a	99	82.990	ENSPMEG00000012961	lsm12b	99	82.990	Poecilia_mexicana
ENSIPUG00000008936	lsm12a	86	83.432	ENSPREG00000010236	lsm12b	94	83.432	Poecilia_reticulata
ENSIPUG00000008936	lsm12a	99	75.773	ENSPPYG00000008344	LSM12	99	75.773	Pongo_abelii
ENSIPUG00000008936	lsm12a	82	76.730	ENSPCAG00000008790	LSM12	100	76.730	Procavia_capensis
ENSIPUG00000008936	lsm12a	99	75.773	ENSPCOG00000027951	LSM12	99	77.778	Propithecus_coquereli
ENSIPUG00000008936	lsm12a	99	75.773	ENSPVAG00000013706	LSM12	99	75.773	Pteropus_vampyrus
ENSIPUG00000008936	lsm12a	99	83.505	ENSPNYG00000003386	lsm12b	99	83.505	Pundamilia_nyererei
ENSIPUG00000008936	lsm12a	99	81.959	ENSPNAG00000004186	lsm12b	99	81.959	Pygocentrus_nattereri
ENSIPUG00000008936	lsm12a	100	82.143	ENSPNAG00000018435	lsm12a	100	82.143	Pygocentrus_nattereri
ENSIPUG00000008936	lsm12a	99	75.773	ENSRNOG00000020894	Lsm12	99	75.773	Rattus_norvegicus
ENSIPUG00000008936	lsm12a	99	75.773	ENSRBIG00000027910	LSM12	99	77.778	Rhinopithecus_bieti
ENSIPUG00000008936	lsm12a	96	47.619	ENSRROG00000000537	-	95	47.619	Rhinopithecus_roxellana
ENSIPUG00000008936	lsm12a	99	75.773	ENSRROG00000045530	-	99	77.778	Rhinopithecus_roxellana
ENSIPUG00000008936	lsm12a	99	75.773	ENSSBOG00000025310	LSM12	99	77.778	Saimiri_boliviensis_boliviensis
ENSIPUG00000008936	lsm12a	79	72.436	ENSSHAG00000014914	LSM12	99	72.436	Sarcophilus_harrisii
ENSIPUG00000008936	lsm12a	99	83.505	ENSSFOG00015009612	lsm12	99	83.505	Scleropages_formosus
ENSIPUG00000008936	lsm12a	99	82.990	ENSSFOG00015020392	lsm12a	99	82.990	Scleropages_formosus
ENSIPUG00000008936	lsm12a	99	83.505	ENSSMAG00000008089	lsm12b	99	83.505	Scophthalmus_maximus
ENSIPUG00000008936	lsm12a	99	84.021	ENSSDUG00000012711	lsm12b	99	84.021	Seriola_dumerili
ENSIPUG00000008936	lsm12a	99	84.021	ENSSLDG00000007404	lsm12b	99	84.021	Seriola_lalandi_dorsalis
ENSIPUG00000008936	lsm12a	77	74.834	ENSSARG00000005537	LSM12	99	74.834	Sorex_araneus
ENSIPUG00000008936	lsm12a	99	74.742	ENSSPUG00000011984	LSM12	99	74.742	Sphenodon_punctatus
ENSIPUG00000008936	lsm12a	99	84.021	ENSSPAG00000017058	lsm12b	99	84.021	Stegastes_partitus
ENSIPUG00000008936	lsm12a	99	75.773	ENSSSCG00000032394	LSM12	99	75.773	Sus_scrofa
ENSIPUG00000008936	lsm12a	99	84.021	ENSTRUG00000007121	lsm12b	99	84.021	Takifugu_rubripes
ENSIPUG00000008936	lsm12a	99	83.505	ENSTNIG00000014436	lsm12b	99	83.505	Tetraodon_nigroviridis
ENSIPUG00000008936	lsm12a	99	72.680	ENSTBEG00000012392	-	99	72.680	Tupaia_belangeri
ENSIPUG00000008936	lsm12a	99	75.258	ENSTBEG00000012523	-	99	75.258	Tupaia_belangeri
ENSIPUG00000008936	lsm12a	99	75.773	ENSTTRG00000010433	LSM12	99	75.773	Tursiops_truncatus
ENSIPUG00000008936	lsm12a	99	75.773	ENSUAMG00000006313	LSM12	99	75.773	Ursus_americanus
ENSIPUG00000008936	lsm12a	79	72.436	ENSUMAG00000012987	LSM12	89	72.436	Ursus_maritimus
ENSIPUG00000008936	lsm12a	99	70.619	ENSVPAG00000011145	LSM12	99	70.619	Vicugna_pacos
ENSIPUG00000008936	lsm12a	99	75.773	ENSVVUG00000017581	LSM12	99	75.773	Vulpes_vulpes
ENSIPUG00000008936	lsm12a	79	57.051	ENSXETG00000003371	lsm12	75	57.051	Xenopus_tropicalis
ENSIPUG00000008936	lsm12a	99	84.021	ENSXCOG00000003994	lsm12b	99	84.021	Xiphophorus_couchianus
ENSIPUG00000008936	lsm12a	99	84.021	ENSXMAG00000020950	lsm12b	99	84.021	Xiphophorus_maculatus