EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000009046 (Gene tree)
Gene ID: 108272956
Gene Symbol: cnot3b
Alias: cnot3|wu:fi20g07|zgc:55934
Full Name: CCR4-NOT transcription complex subunit 3-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 18287 bases
Position: chr12:14991116-15009402
Accession: 108272956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000013281	Not3	PF04065.15	8.4e-96	1	1
ENSIPUP00000013281	NOT2_3_5	PF04153.18	1.8e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000013836	-	2601	XM_017481850	ENSIPUP00000013281	866 (aa)	XP_017337339	-

Gene Model

Click here to download ENSIPUG00000009046's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000009046's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000009046	cnot3b	100	59.166	ENSIPUG00000000167	cnot3	100	60.730

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000009046	cnot3b	67	91.398	ENSG00000088038	CNOT3	100	94.845	Homo_sapiens
ENSIPUG00000009046	cnot3b	58	94.915	ENSAPOG00000015499	CNOT3	92	83.274	Acanthochromis_polyacanthus
ENSIPUG00000009046	cnot3b	68	91.756	ENSAMEG00000004528	CNOT3	94	91.756	Ailuropoda_melanoleuca
ENSIPUG00000009046	cnot3b	71	92.411	ENSACIG00000003652	cnot3b	99	92.411	Amphilophus_citrinellus
ENSIPUG00000009046	cnot3b	72	95.726	ENSACIG00000006635	cnot3a	99	95.726	Amphilophus_citrinellus
ENSIPUG00000009046	cnot3b	97	61.676	ENSAOCG00000018385	-	99	77.990	Amphiprion_ocellaris
ENSIPUG00000009046	cnot3b	97	65.463	ENSAPEG00000002640	cnot3b	98	94.286	Amphiprion_percula
ENSIPUG00000009046	cnot3b	100	65.856	ENSATEG00000022737	cnot3a	100	67.670	Anabas_testudineus
ENSIPUG00000009046	cnot3b	100	66.631	ENSATEG00000015777	cnot3b	100	67.588	Anabas_testudineus
ENSIPUG00000009046	cnot3b	68	91.398	ENSACAG00000016085	CNOT3	95	91.398	Anolis_carolinensis
ENSIPUG00000009046	cnot3b	67	91.398	ENSANAG00000025756	CNOT3	95	91.398	Aotus_nancymaae
ENSIPUG00000009046	cnot3b	100	66.989	ENSACLG00000016702	cnot3b	100	68.858	Astatotilapia_calliptera
ENSIPUG00000009046	cnot3b	100	75.952	ENSAMXG00000009447	cnot3b	99	84.390	Astyanax_mexicanus
ENSIPUG00000009046	cnot3b	100	64.680	ENSAMXG00000012359	cnot3a	100	66.448	Astyanax_mexicanus
ENSIPUG00000009046	cnot3b	68	91.398	ENSBTAG00000014900	CNOT3	95	91.398	Bos_taurus
ENSIPUG00000009046	cnot3b	67	91.398	ENSCJAG00000001094	CNOT3	95	91.398	Callithrix_jacchus
ENSIPUG00000009046	cnot3b	73	78.198	ENSCAFG00000002699	CNOT3	93	91.398	Canis_familiaris
ENSIPUG00000009046	cnot3b	73	78.198	ENSCAFG00020018359	CNOT3	93	91.398	Canis_lupus_dingo
ENSIPUG00000009046	cnot3b	68	89.209	ENSCHIG00000015302	CNOT3	98	89.209	Capra_hircus
ENSIPUG00000009046	cnot3b	68	91.398	ENSTSYG00000008058	CNOT3	95	91.398	Carlito_syrichta
ENSIPUG00000009046	cnot3b	67	91.398	ENSCAPG00000009533	CNOT3	95	91.398	Cavia_aperea
ENSIPUG00000009046	cnot3b	76	91.398	ENSCPOG00000020741	CNOT3	95	91.398	Cavia_porcellus
ENSIPUG00000009046	cnot3b	67	91.398	ENSCCAG00000036290	CNOT3	95	91.398	Cebus_capucinus
ENSIPUG00000009046	cnot3b	70	91.398	ENSCATG00000030324	CNOT3	95	91.398	Cercocebus_atys
ENSIPUG00000009046	cnot3b	81	91.398	ENSCLAG00000003302	CNOT3	99	91.398	Chinchilla_lanigera
ENSIPUG00000009046	cnot3b	67	91.398	ENSCSAG00000001900	CNOT3	95	91.398	Chlorocebus_sabaeus
ENSIPUG00000009046	cnot3b	68	92.473	ENSCPBG00000011655	CNOT3	98	92.473	Chrysemys_picta_bellii
ENSIPUG00000009046	cnot3b	71	84.091	ENSCANG00000013408	CNOT3	95	91.398	Colobus_angolensis_palliatus
ENSIPUG00000009046	cnot3b	78	91.039	ENSCGRG00001000855	Cnot3	95	91.039	Cricetulus_griseus_chok1gshd
ENSIPUG00000009046	cnot3b	86	79.703	ENSCSEG00000016892	cnot3b	100	62.361	Cynoglossus_semilaevis
ENSIPUG00000009046	cnot3b	100	64.995	ENSCVAG00000022122	cnot3b	100	65.795	Cyprinodon_variegatus
ENSIPUG00000009046	cnot3b	100	63.943	ENSDARG00000007135	cnot3a	100	65.326	Danio_rerio
ENSIPUG00000009046	cnot3b	100	71.823	ENSDARG00000019842	cnot3b	100	72.486	Danio_rerio
ENSIPUG00000009046	cnot3b	67	91.039	ENSDNOG00000045972	CNOT3	93	91.039	Dasypus_novemcinctus
ENSIPUG00000009046	cnot3b	76	91.398	ENSDORG00000008021	Cnot3	95	91.398	Dipodomys_ordii
ENSIPUG00000009046	cnot3b	51	100.000	ENSETEG00000006305	CNOT3	69	100.000	Echinops_telfairi
ENSIPUG00000009046	cnot3b	67	91.398	ENSEASG00005021591	CNOT3	94	91.398	Equus_asinus_asinus
ENSIPUG00000009046	cnot3b	67	91.398	ENSECAG00000023181	CNOT3	94	91.398	Equus_caballus
ENSIPUG00000009046	cnot3b	100	62.136	ENSELUG00000014743	cnot3a	100	63.147	Esox_lucius
ENSIPUG00000009046	cnot3b	100	67.131	ENSELUG00000000953	cnot3b	100	67.306	Esox_lucius
ENSIPUG00000009046	cnot3b	76	91.398	ENSFCAG00000014042	CNOT3	93	91.398	Felis_catus
ENSIPUG00000009046	cnot3b	73	94.492	ENSFHEG00000023166	cnot3a	100	94.492	Fundulus_heteroclitus
ENSIPUG00000009046	cnot3b	100	62.076	ENSFHEG00000001696	cnot3b	100	64.516	Fundulus_heteroclitus
ENSIPUG00000009046	cnot3b	94	57.679	ENSGMOG00000005365	cnot3a	98	59.306	Gadus_morhua
ENSIPUG00000009046	cnot3b	57	57.654	ENSGAFG00000013094	cnot3a	100	64.686	Gambusia_affinis
ENSIPUG00000009046	cnot3b	100	64.853	ENSGAFG00000003459	cnot3b	100	66.630	Gambusia_affinis
ENSIPUG00000009046	cnot3b	70	84.962	ENSGACG00000009395	cnot3b	80	84.962	Gasterosteus_aculeatus
ENSIPUG00000009046	cnot3b	69	85.246	ENSGAGG00000012677	CNOT3	98	90.104	Gopherus_agassizii
ENSIPUG00000009046	cnot3b	67	91.398	ENSGGOG00000012996	CNOT3	95	91.398	Gorilla_gorilla
ENSIPUG00000009046	cnot3b	99	62.690	ENSHBUG00000019699	cnot3b	99	63.874	Haplochromis_burtoni
ENSIPUG00000009046	cnot3b	73	78.488	ENSHGLG00000008821	CNOT3	95	91.398	Heterocephalus_glaber_female
ENSIPUG00000009046	cnot3b	100	62.678	ENSHCOG00000020968	cnot3a	100	64.817	Hippocampus_comes
ENSIPUG00000009046	cnot3b	68	91.398	ENSSTOG00000028248	CNOT3	93	91.398	Ictidomys_tridecemlineatus
ENSIPUG00000009046	cnot3b	78	91.039	ENSJJAG00000014594	Cnot3	93	91.039	Jaculus_jaculus
ENSIPUG00000009046	cnot3b	74	88.690	ENSKMAG00000004863	cnot3a	100	88.690	Kryptolebias_marmoratus
ENSIPUG00000009046	cnot3b	100	65.767	ENSKMAG00000018723	cnot3b	100	67.714	Kryptolebias_marmoratus
ENSIPUG00000009046	cnot3b	96	64.922	ENSLBEG00000018278	cnot3b	99	66.480	Labrus_bergylta
ENSIPUG00000009046	cnot3b	75	81.281	ENSLBEG00000017296	cnot3a	94	81.281	Labrus_bergylta
ENSIPUG00000009046	cnot3b	68	90.681	ENSLACG00000009742	CNOT3	100	90.681	Latimeria_chalumnae
ENSIPUG00000009046	cnot3b	54	91.713	ENSLOCG00000000005	cnot3b	92	91.713	Lepisosteus_oculatus
ENSIPUG00000009046	cnot3b	67	90.357	ENSLAFG00000022133	CNOT3	94	90.357	Loxodonta_africana
ENSIPUG00000009046	cnot3b	76	91.398	ENSMFAG00000040073	CNOT3	95	91.398	Macaca_fascicularis
ENSIPUG00000009046	cnot3b	65	92.857	ENSMMUG00000009698	CNOT3	100	96.078	Macaca_mulatta
ENSIPUG00000009046	cnot3b	70	91.398	ENSMNEG00000036750	CNOT3	95	91.398	Macaca_nemestrina
ENSIPUG00000009046	cnot3b	70	91.398	ENSMLEG00000036579	CNOT3	94	91.398	Mandrillus_leucophaeus
ENSIPUG00000009046	cnot3b	100	67.022	ENSMAMG00000019357	cnot3b	100	67.511	Mastacembelus_armatus
ENSIPUG00000009046	cnot3b	100	67.206	ENSMZEG00005002466	cnot3b	100	69.081	Maylandia_zebra
ENSIPUG00000009046	cnot3b	78	91.039	ENSMAUG00000014996	Cnot3	95	91.039	Mesocricetus_auratus
ENSIPUG00000009046	cnot3b	67	91.398	ENSMICG00000002370	CNOT3	100	91.398	Microcebus_murinus
ENSIPUG00000009046	cnot3b	70	90.598	ENSMMOG00000013086	cnot3b	99	90.598	Mola_mola
ENSIPUG00000009046	cnot3b	100	62.198	ENSMMOG00000016446	cnot3a	100	63.198	Mola_mola
ENSIPUG00000009046	cnot3b	61	87.879	ENSMODG00000004066	CNOT3	94	92.473	Monodelphis_domestica
ENSIPUG00000009046	cnot3b	71	87.192	ENSMALG00000004936	cnot3b	92	88.645	Monopterus_albus
ENSIPUG00000009046	cnot3b	100	64.066	ENSMALG00000009204	cnot3a	100	65.093	Monopterus_albus
ENSIPUG00000009046	cnot3b	68	91.039	MGP_CAROLIEiJ_G0029095	Cnot3	100	96.000	Mus_caroli
ENSIPUG00000009046	cnot3b	68	91.039	ENSMUSG00000035632	Cnot3	100	96.000	Mus_musculus
ENSIPUG00000009046	cnot3b	82	77.907	MGP_PahariEiJ_G0020964	Cnot3	100	96.000	Mus_pahari
ENSIPUG00000009046	cnot3b	68	91.039	MGP_SPRETEiJ_G0030148	Cnot3	100	96.000	Mus_spretus
ENSIPUG00000009046	cnot3b	67	91.398	ENSMPUG00000010352	CNOT3	100	91.398	Mustela_putorius_furo
ENSIPUG00000009046	cnot3b	67	91.398	ENSNGAG00000013266	Cnot3	93	91.398	Nannospalax_galili
ENSIPUG00000009046	cnot3b	86	83.219	ENSNBRG00000003336	cnot3b	98	89.381	Neolamprologus_brichardi
ENSIPUG00000009046	cnot3b	67	91.398	ENSNLEG00000006272	CNOT3	95	91.398	Nomascus_leucogenys
ENSIPUG00000009046	cnot3b	50	100.000	ENSOPRG00000001605	-	60	100.000	Ochotona_princeps
ENSIPUG00000009046	cnot3b	78	91.398	ENSODEG00000000705	CNOT3	100	89.873	Octodon_degus
ENSIPUG00000009046	cnot3b	100	64.108	ENSONIG00000006568	cnot3a	100	65.601	Oreochromis_niloticus
ENSIPUG00000009046	cnot3b	100	67.961	ENSONIG00000007047	cnot3b	100	69.405	Oreochromis_niloticus
ENSIPUG00000009046	cnot3b	78	91.398	ENSOCUG00000007691	CNOT3	95	91.398	Oryctolagus_cuniculus
ENSIPUG00000009046	cnot3b	100	65.838	ENSOMEG00000015557	cnot3b	100	66.667	Oryzias_melastigma
ENSIPUG00000009046	cnot3b	88	85.864	ENSOMEG00000010309	cnot3a	94	91.367	Oryzias_melastigma
ENSIPUG00000009046	cnot3b	67	91.398	ENSOGAG00000006945	CNOT3	100	91.398	Otolemur_garnettii
ENSIPUG00000009046	cnot3b	67	91.398	ENSPPAG00000002748	CNOT3	95	91.398	Pan_paniscus
ENSIPUG00000009046	cnot3b	76	91.398	ENSPPRG00000011705	CNOT3	93	91.398	Panthera_pardus
ENSIPUG00000009046	cnot3b	82	66.667	ENSPTIG00000008781	CNOT3	100	91.398	Panthera_tigris_altaica
ENSIPUG00000009046	cnot3b	67	91.398	ENSPTRG00000011444	CNOT3	95	91.398	Pan_troglodytes
ENSIPUG00000009046	cnot3b	67	91.398	ENSPTRG00000046717	-	95	91.398	Pan_troglodytes
ENSIPUG00000009046	cnot3b	70	91.398	ENSPANG00000009375	CNOT3	95	91.398	Papio_anubis
ENSIPUG00000009046	cnot3b	97	86.387	ENSPKIG00000011733	CNOT3	100	66.704	Paramormyrops_kingsleyae
ENSIPUG00000009046	cnot3b	70	97.009	ENSPKIG00000015967	-	99	97.009	Paramormyrops_kingsleyae
ENSIPUG00000009046	cnot3b	98	60.845	ENSPMGG00000022539	cnot3b	99	63.749	Periophthalmus_magnuspinnatus
ENSIPUG00000009046	cnot3b	78	91.039	ENSPEMG00000024185	Cnot3	95	91.039	Peromyscus_maniculatus_bairdii
ENSIPUG00000009046	cnot3b	68	92.115	ENSPCIG00000023018	CNOT3	98	92.115	Phascolarctos_cinereus
ENSIPUG00000009046	cnot3b	100	65.686	ENSPFOG00000007168	cnot3b	100	65.521	Poecilia_formosa
ENSIPUG00000009046	cnot3b	73	91.732	ENSPFOG00000008693	cnot3a	96	92.029	Poecilia_formosa
ENSIPUG00000009046	cnot3b	100	65.686	ENSPLAG00000013457	cnot3b	100	65.521	Poecilia_latipinna
ENSIPUG00000009046	cnot3b	100	65.686	ENSPMEG00000010184	cnot3b	100	65.628	Poecilia_mexicana
ENSIPUG00000009046	cnot3b	70	96.154	ENSPREG00000007592	cnot3a	99	96.154	Poecilia_reticulata
ENSIPUG00000009046	cnot3b	98	61.361	ENSPREG00000000662	cnot3b	97	61.394	Poecilia_reticulata
ENSIPUG00000009046	cnot3b	67	91.039	ENSPPYG00000010372	CNOT3	95	91.039	Pongo_abelii
ENSIPUG00000009046	cnot3b	67	91.398	ENSPCOG00000017673	CNOT3	100	91.398	Propithecus_coquereli
ENSIPUG00000009046	cnot3b	68	91.039	ENSPVAG00000015564	CNOT3	85	91.039	Pteropus_vampyrus
ENSIPUG00000009046	cnot3b	99	64.403	ENSPNYG00000003358	cnot3b	99	65.385	Pundamilia_nyererei
ENSIPUG00000009046	cnot3b	100	78.477	ENSPNAG00000027459	cnot3b	100	78.477	Pygocentrus_nattereri
ENSIPUG00000009046	cnot3b	100	64.527	ENSPNAG00000017679	cnot3a	90	93.333	Pygocentrus_nattereri
ENSIPUG00000009046	cnot3b	82	77.907	ENSRNOG00000053234	Cnot3	93	91.039	Rattus_norvegicus
ENSIPUG00000009046	cnot3b	67	91.398	ENSRBIG00000031025	CNOT3	95	91.398	Rhinopithecus_bieti
ENSIPUG00000009046	cnot3b	67	91.398	ENSRROG00000003872	CNOT3	95	91.398	Rhinopithecus_roxellana
ENSIPUG00000009046	cnot3b	67	91.398	ENSSBOG00000030268	CNOT3	95	91.398	Saimiri_boliviensis_boliviensis
ENSIPUG00000009046	cnot3b	100	66.630	ENSSFOG00015000248	cnot3	100	66.957	Scleropages_formosus
ENSIPUG00000009046	cnot3b	100	66.667	ENSSFOG00015019203	-	100	67.394	Scleropages_formosus
ENSIPUG00000009046	cnot3b	100	64.974	ENSSMAG00000016031	cnot3b	100	66.631	Scophthalmus_maximus
ENSIPUG00000009046	cnot3b	100	68.399	ENSSDUG00000003428	cnot3b	100	68.124	Seriola_dumerili
ENSIPUG00000009046	cnot3b	72	95.299	ENSSDUG00000008181	cnot3a	99	95.299	Seriola_dumerili
ENSIPUG00000009046	cnot3b	100	68.124	ENSSLDG00000014376	cnot3b	100	68.017	Seriola_lalandi_dorsalis
ENSIPUG00000009046	cnot3b	80	77.095	ENSSPUG00000008510	CNOT3	95	92.115	Sphenodon_punctatus
ENSIPUG00000009046	cnot3b	100	67.987	ENSSPAG00000001429	cnot3b	100	69.272	Stegastes_partitus
ENSIPUG00000009046	cnot3b	100	63.492	ENSSPAG00000003858	cnot3a	100	64.181	Stegastes_partitus
ENSIPUG00000009046	cnot3b	67	91.398	ENSSSCG00000003264	CNOT3	94	91.398	Sus_scrofa
ENSIPUG00000009046	cnot3b	96	90.323	ENSTRUG00000007248	cnot3b	100	59.158	Takifugu_rubripes
ENSIPUG00000009046	cnot3b	94	60.235	ENSTNIG00000008082	cnot3a	100	61.395	Tetraodon_nigroviridis
ENSIPUG00000009046	cnot3b	94	61.731	ENSTNIG00000005663	cnot3b	100	61.600	Tetraodon_nigroviridis
ENSIPUG00000009046	cnot3b	68	91.756	ENSUAMG00000005234	CNOT3	93	91.756	Ursus_americanus
ENSIPUG00000009046	cnot3b	62	89.606	ENSUMAG00000010934	CNOT3	100	90.323	Ursus_maritimus
ENSIPUG00000009046	cnot3b	64	91.398	ENSVVUG00000008239	CNOT3	93	91.398	Vulpes_vulpes
ENSIPUG00000009046	cnot3b	69	88.070	ENSXETG00000003166	cnot3	99	89.161	Xenopus_tropicalis
ENSIPUG00000009046	cnot3b	100	61.008	ENSXCOG00000019460	cnot3a	98	94.915	Xiphophorus_couchianus
ENSIPUG00000009046	cnot3b	96	66.394	ENSXCOG00000018976	cnot3b	99	67.366	Xiphophorus_couchianus
ENSIPUG00000009046	cnot3b	100	62.024	ENSXMAG00000012273	cnot3a	100	64.615	Xiphophorus_maculatus
ENSIPUG00000009046	cnot3b	100	65.832	ENSXMAG00000014176	cnot3b	100	66.630	Xiphophorus_maculatus