EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000009207 (Gene tree)
Gene ID
108255226
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Minus strand
Length
13221 bases
Position
chr21:15856556-15869776
Accession
108255226
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000013467LSMPF01423.223.9e-2011
ENSIPUP00000013500LSMPF01423.224e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000014065-309-ENSIPUP00000013500102 (aa)--
ENSIPUT00000014032-2985XM_017451029ENSIPUP00000013467102 (aa)XP_017306518A0A2D0PKJ7
Gene Model
Click here to download ENSIPUG00000009207's gene model file
Pathways
Pathway IDPathway NameSource
ipu03018RNA degradationKEGG
ipu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000009207's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000009207lsm37732.927ENSIPUG00000001053snrpd26932.927
ENSIPUG00000009207lsm38433.333ENSIPUG00000021095LSM59633.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000009207lsm310097.059ENSG00000170860LSM310097.059Homo_sapiens
ENSIPUG00000009207lsm310098.039ENSAPOG00000018947lsm310098.039Acanthochromis_polyacanthus
ENSIPUG00000009207lsm310097.059ENSAMEG00000009405LSM310097.059Ailuropoda_melanoleuca
ENSIPUG00000009207lsm310097.059ENSACIG00000004574lsm37197.059Amphilophus_citrinellus
ENSIPUG00000009207lsm310098.039ENSAOCG00000007658lsm310098.039Amphiprion_ocellaris
ENSIPUG00000009207lsm310098.039ENSAPEG00000018621lsm310098.039Amphiprion_percula
ENSIPUG00000009207lsm310098.039ENSATEG00000005153lsm310098.039Anabas_testudineus
ENSIPUG00000009207lsm39397.895ENSAPLG00000014499LSM310097.895Anas_platyrhynchos
ENSIPUG00000009207lsm310096.078ENSACAG00000013503LSM310096.078Anolis_carolinensis
ENSIPUG00000009207lsm310093.137ENSANAG00000002903-10093.137Aotus_nancymaae
ENSIPUG00000009207lsm310097.059ENSANAG00000034627LSM310097.059Aotus_nancymaae
ENSIPUG00000009207lsm39598.969ENSACLG00000001726-9498.969Astatotilapia_calliptera
ENSIPUG00000009207lsm310098.039ENSAMXG00000041214lsm310098.039Astyanax_mexicanus
ENSIPUG00000009207lsm39497.917ENSBTAG00000007363LSM310097.917Bos_taurus
ENSIPUG00000009207lsm310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSIPUG00000009207lsm310095.098ENSCAFG00000001760LSM310095.098Canis_familiaris
ENSIPUG00000009207lsm310095.098ENSCAFG00020021584-10095.098Canis_lupus_dingo
ENSIPUG00000009207lsm310085.981ENSCAFG00020020950-10085.981Canis_lupus_dingo
ENSIPUG00000009207lsm310088.235ENSCAFG00020016680-10088.235Canis_lupus_dingo
ENSIPUG00000009207lsm310094.118ENSCAFG00020026452-10094.118Canis_lupus_dingo
ENSIPUG00000009207lsm310095.098ENSCAFG00020017266-10095.098Canis_lupus_dingo
ENSIPUG00000009207lsm310097.059ENSCHIG00000024650LSM310097.059Capra_hircus
ENSIPUG00000009207lsm310098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSIPUG00000009207lsm39979.208ENSTSYG00000028528-9979.208Carlito_syrichta
ENSIPUG00000009207lsm39497.917ENSCAPG00000015760LSM310097.917Cavia_aperea
ENSIPUG00000009207lsm310097.059ENSCPOG00000034071LSM310097.059Cavia_porcellus
ENSIPUG00000009207lsm310097.059ENSCCAG00000036499-10097.059Cebus_capucinus
ENSIPUG00000009207lsm310077.451ENSCCAG00000032763-10077.451Cebus_capucinus
ENSIPUG00000009207lsm310097.059ENSCCAG00000019503-10097.059Cebus_capucinus
ENSIPUG00000009207lsm310097.059ENSCATG00000039421LSM310097.059Cercocebus_atys
ENSIPUG00000009207lsm39977.228ENSCATG00000031630-9977.228Cercocebus_atys
ENSIPUG00000009207lsm310097.059ENSCLAG00000015997LSM310097.059Chinchilla_lanigera
ENSIPUG00000009207lsm310092.157ENSCSAG00000019525-10092.157Chlorocebus_sabaeus
ENSIPUG00000009207lsm310096.078ENSCPBG00000014531LSM310096.078Chrysemys_picta_bellii
ENSIPUG00000009207lsm39882.000ENSCSAVG00000009542-10079.808Ciona_savignyi
ENSIPUG00000009207lsm310094.118ENSCANG00000038037-10094.118Colobus_angolensis_palliatus
ENSIPUG00000009207lsm310092.157ENSCANG00000018782-10092.157Colobus_angolensis_palliatus
ENSIPUG00000009207lsm310097.059ENSCANG00000033944-10097.059Colobus_angolensis_palliatus
ENSIPUG00000009207lsm310097.059ENSCGRG00001017598Lsm310097.059Cricetulus_griseus_chok1gshd
ENSIPUG00000009207lsm310073.786ENSCGRG00001008639-10073.786Cricetulus_griseus_chok1gshd
ENSIPUG00000009207lsm39882.000ENSCGRG00001011396-10082.000Cricetulus_griseus_chok1gshd
ENSIPUG00000009207lsm39383.158ENSCGRG00000012129-10083.158Cricetulus_griseus_crigri
ENSIPUG00000009207lsm310097.059ENSCGRG00000016159Lsm310097.059Cricetulus_griseus_crigri
ENSIPUG00000009207lsm310098.039ENSCSEG00000015071lsm37798.039Cynoglossus_semilaevis
ENSIPUG00000009207lsm310097.059ENSCVAG00000006933lsm310097.059Cyprinodon_variegatus
ENSIPUG00000009207lsm310098.039ENSDARG00000089663lsm310098.039Danio_rerio
ENSIPUG00000009207lsm310097.059ENSDNOG00000030808LSM310097.059Dasypus_novemcinctus
ENSIPUG00000009207lsm310077.451ENSDORG00000024490-10077.451Dipodomys_ordii
ENSIPUG00000009207lsm310097.059ENSDORG00000006894-10097.059Dipodomys_ordii
ENSIPUG00000009207lsm310077.670FBgn0051184LSm310077.670Drosophila_melanogaster
ENSIPUG00000009207lsm310097.059ENSETEG00000016207LSM310097.059Echinops_telfairi
ENSIPUG00000009207lsm310090.196ENSEBUG00000004943lsm310090.196Eptatretus_burgeri
ENSIPUG00000009207lsm310097.059ENSEASG00005015443LSM310097.059Equus_asinus_asinus
ENSIPUG00000009207lsm310097.059ENSECAG00000007803LSM310097.059Equus_caballus
ENSIPUG00000009207lsm310098.039ENSELUG00000018922lsm310098.039Esox_lucius
ENSIPUG00000009207lsm310097.059ENSFCAG00000038453LSM310097.059Felis_catus
ENSIPUG00000009207lsm310074.510ENSFCAG00000044344-10074.510Felis_catus
ENSIPUG00000009207lsm310096.078ENSFALG00000012644LSM310096.078Ficedula_albicollis
ENSIPUG00000009207lsm310097.059ENSFDAG00000011470LSM310097.059Fukomys_damarensis
ENSIPUG00000009207lsm310098.039ENSFHEG00000000876lsm310098.039Fundulus_heteroclitus
ENSIPUG00000009207lsm39396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSIPUG00000009207lsm310098.039ENSGAFG00000013965lsm310098.039Gambusia_affinis
ENSIPUG00000009207lsm310098.039ENSGACG00000003488lsm310098.039Gasterosteus_aculeatus
ENSIPUG00000009207lsm310096.078ENSGAGG00000025707LSM310096.078Gopherus_agassizii
ENSIPUG00000009207lsm310097.059ENSGGOG00000010006LSM310097.059Gorilla_gorilla
ENSIPUG00000009207lsm310098.039ENSHBUG00000022399lsm310098.039Haplochromis_burtoni
ENSIPUG00000009207lsm310097.059ENSHGLG00000000651LSM310097.059Heterocephalus_glaber_female
ENSIPUG00000009207lsm310077.451ENSHGLG00000015564-10077.451Heterocephalus_glaber_female
ENSIPUG00000009207lsm310077.451ENSHGLG00100010658-10077.451Heterocephalus_glaber_male
ENSIPUG00000009207lsm310097.059ENSHGLG00100011343LSM310097.059Heterocephalus_glaber_male
ENSIPUG00000009207lsm310097.059ENSHCOG00000013481lsm310097.059Hippocampus_comes
ENSIPUG00000009207lsm310097.059ENSSTOG00000006842LSM310097.059Ictidomys_tridecemlineatus
ENSIPUG00000009207lsm310097.059ENSJJAG00000017351Lsm310097.059Jaculus_jaculus
ENSIPUG00000009207lsm310088.235ENSJJAG00000012797-10088.235Jaculus_jaculus
ENSIPUG00000009207lsm39974.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSIPUG00000009207lsm310097.059ENSKMAG00000015182lsm310097.059Kryptolebias_marmoratus
ENSIPUG00000009207lsm39696.939ENSLBEG00000021292lsm310096.939Labrus_bergylta
ENSIPUG00000009207lsm310096.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSIPUG00000009207lsm310096.117ENSLAFG00000023308LSM310096.117Loxodonta_africana
ENSIPUG00000009207lsm310097.059ENSMFAG00000003185LSM310097.059Macaca_fascicularis
ENSIPUG00000009207lsm39577.320ENSMMUG00000002294-9477.320Macaca_mulatta
ENSIPUG00000009207lsm310074.510ENSMMUG00000043596-10074.510Macaca_mulatta
ENSIPUG00000009207lsm310097.059ENSMMUG00000023126LSM310097.059Macaca_mulatta
ENSIPUG00000009207lsm310097.059ENSMNEG00000043632LSM310097.059Macaca_nemestrina
ENSIPUG00000009207lsm39979.208ENSMNEG00000037686-9979.208Macaca_nemestrina
ENSIPUG00000009207lsm310097.059ENSMLEG00000036162LSM310097.059Mandrillus_leucophaeus
ENSIPUG00000009207lsm310098.039ENSMAMG00000012807lsm310098.039Mastacembelus_armatus
ENSIPUG00000009207lsm310098.039ENSMZEG00005016682lsm37398.039Maylandia_zebra
ENSIPUG00000009207lsm39497.917ENSMGAG00000007776LSM310097.917Meleagris_gallopavo
ENSIPUG00000009207lsm310096.078ENSMICG00000032361-10096.078Microcebus_murinus
ENSIPUG00000009207lsm310082.353ENSMICG00000027821-10082.353Microcebus_murinus
ENSIPUG00000009207lsm310097.059ENSMOCG00000014269Lsm310097.059Microtus_ochrogaster
ENSIPUG00000009207lsm310097.059ENSMMOG00000020715lsm310097.059Mola_mola
ENSIPUG00000009207lsm310096.078ENSMODG00000007275LSM310096.078Monodelphis_domestica
ENSIPUG00000009207lsm310098.039ENSMALG00000006485lsm310098.039Monopterus_albus
ENSIPUG00000009207lsm310097.059ENSMUSG00000034192Lsm310097.059Mus_musculus
ENSIPUG00000009207lsm310097.059MGP_PahariEiJ_G0022402Lsm310097.059Mus_pahari
ENSIPUG00000009207lsm310097.059MGP_SPRETEiJ_G0029681Lsm310097.059Mus_spretus
ENSIPUG00000009207lsm39785.859ENSMPUG00000019120-9785.859Mustela_putorius_furo
ENSIPUG00000009207lsm38389.412ENSMPUG00000017256-10089.412Mustela_putorius_furo
ENSIPUG00000009207lsm310097.059ENSMLUG00000010677LSM310097.059Myotis_lucifugus
ENSIPUG00000009207lsm310092.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSIPUG00000009207lsm310071.569ENSNGAG00000013716-10071.569Nannospalax_galili
ENSIPUG00000009207lsm39978.218ENSNGAG00000010207-9978.218Nannospalax_galili
ENSIPUG00000009207lsm310097.059ENSNGAG00000022450Lsm310097.059Nannospalax_galili
ENSIPUG00000009207lsm310098.039ENSNBRG00000014318lsm310098.039Neolamprologus_brichardi
ENSIPUG00000009207lsm310088.235ENSNLEG00000030229-10088.235Nomascus_leucogenys
ENSIPUG00000009207lsm310097.059ENSNLEG00000005079LSM310097.059Nomascus_leucogenys
ENSIPUG00000009207lsm310096.078ENSODEG00000019740-10096.078Octodon_degus
ENSIPUG00000009207lsm310090.196ENSODEG00000019403-10090.196Octodon_degus
ENSIPUG00000009207lsm310095.098ENSODEG00000019158-10095.098Octodon_degus
ENSIPUG00000009207lsm310097.059ENSODEG00000001726LSM310097.059Octodon_degus
ENSIPUG00000009207lsm310098.039ENSONIG00000021369-10098.039Oreochromis_niloticus
ENSIPUG00000009207lsm310098.039ENSONIG00000000370lsm310098.039Oreochromis_niloticus
ENSIPUG00000009207lsm310096.078ENSOANG00000012273LSM310096.078Ornithorhynchus_anatinus
ENSIPUG00000009207lsm310097.059ENSOCUG00000027653-10097.059Oryctolagus_cuniculus
ENSIPUG00000009207lsm310093.137ENSOCUG00000011088-10093.137Oryctolagus_cuniculus
ENSIPUG00000009207lsm310096.078ENSORLG00000025900lsm310096.078Oryzias_latipes
ENSIPUG00000009207lsm310096.078ENSORLG00020007125lsm310096.078Oryzias_latipes_hni
ENSIPUG00000009207lsm310096.078ENSORLG00015002944lsm310096.078Oryzias_latipes_hsok
ENSIPUG00000009207lsm310096.078ENSOMEG00000001915lsm310096.078Oryzias_melastigma
ENSIPUG00000009207lsm310097.059ENSOGAG00000007659-10097.059Otolemur_garnettii
ENSIPUG00000009207lsm39694.898ENSOGAG00000028858-10094.898Otolemur_garnettii
ENSIPUG00000009207lsm310087.255ENSOGAG00000033051-10087.255Otolemur_garnettii
ENSIPUG00000009207lsm310096.117ENSOARG00000000600LSM310096.117Ovis_aries
ENSIPUG00000009207lsm310097.059ENSPPAG00000034074LSM310097.059Pan_paniscus
ENSIPUG00000009207lsm39989.109ENSPPRG00000010610-8989.109Panthera_pardus
ENSIPUG00000009207lsm310097.059ENSPPRG00000012912-10097.059Panthera_pardus
ENSIPUG00000009207lsm310096.078ENSPPRG00000020953-10096.078Panthera_pardus
ENSIPUG00000009207lsm310097.059ENSPTIG00000013072-10097.059Panthera_tigris_altaica
ENSIPUG00000009207lsm310097.059ENSPTIG00000003463-10097.059Panthera_tigris_altaica
ENSIPUG00000009207lsm310097.059ENSPTRG00000014650LSM310097.059Pan_troglodytes
ENSIPUG00000009207lsm310075.490ENSPANG00000032192-10075.490Papio_anubis
ENSIPUG00000009207lsm310097.059ENSPANG00000009378LSM310097.059Papio_anubis
ENSIPUG00000009207lsm310097.059ENSPKIG00000008037lsm39197.059Paramormyrops_kingsleyae
ENSIPUG00000009207lsm310096.078ENSPSIG00000015720LSM310096.078Pelodiscus_sinensis
ENSIPUG00000009207lsm39594.845ENSPMGG00000012103lsm39894.845Periophthalmus_magnuspinnatus
ENSIPUG00000009207lsm310097.059ENSPEMG00000015797Lsm310097.059Peromyscus_maniculatus_bairdii
ENSIPUG00000009207lsm310080.392ENSPEMG00000020213-10080.392Peromyscus_maniculatus_bairdii
ENSIPUG00000009207lsm310098.039ENSPFOG00000008372lsm310098.039Poecilia_formosa
ENSIPUG00000009207lsm310098.039ENSPLAG00000000563lsm310098.039Poecilia_latipinna
ENSIPUG00000009207lsm310098.039ENSPMEG00000022052lsm310098.039Poecilia_mexicana
ENSIPUG00000009207lsm310098.039ENSPREG00000022485lsm310098.039Poecilia_reticulata
ENSIPUG00000009207lsm310097.059ENSPPYG00000013402LSM310097.059Pongo_abelii
ENSIPUG00000009207lsm310097.059ENSPCAG00000017077LSM310097.059Procavia_capensis
ENSIPUG00000009207lsm310096.078ENSPCOG00000016217-10096.078Propithecus_coquereli
ENSIPUG00000009207lsm39475.000ENSPCOG00000014435-9875.000Propithecus_coquereli
ENSIPUG00000009207lsm310097.059ENSPVAG00000016795LSM310097.059Pteropus_vampyrus
ENSIPUG00000009207lsm310098.039ENSPNYG00000009552lsm37398.039Pundamilia_nyererei
ENSIPUG00000009207lsm310098.039ENSPNAG00000023467lsm310098.039Pygocentrus_nattereri
ENSIPUG00000009207lsm310097.059ENSRNOG00000008733Lsm310097.059Rattus_norvegicus
ENSIPUG00000009207lsm310097.059ENSRBIG00000034399LSM310097.059Rhinopithecus_bieti
ENSIPUG00000009207lsm310081.373ENSRBIG00000043783-10081.373Rhinopithecus_bieti
ENSIPUG00000009207lsm310078.431ENSRROG00000044056-10078.431Rhinopithecus_roxellana
ENSIPUG00000009207lsm310082.353ENSRROG00000039868-10082.353Rhinopithecus_roxellana
ENSIPUG00000009207lsm310086.275ENSRROG00000044047-10086.275Rhinopithecus_roxellana
ENSIPUG00000009207lsm310097.059ENSRROG00000033276-10097.059Rhinopithecus_roxellana
ENSIPUG00000009207lsm310097.059ENSSBOG00000024310LSM310097.059Saimiri_boliviensis_boliviensis
ENSIPUG00000009207lsm310098.039ENSSFOG00015007071lsm310098.039Scleropages_formosus
ENSIPUG00000009207lsm310098.039ENSSMAG00000001818lsm310098.039Scophthalmus_maximus
ENSIPUG00000009207lsm310098.039ENSSDUG00000006040lsm310098.039Seriola_dumerili
ENSIPUG00000009207lsm310098.039ENSSLDG00000006399lsm310098.039Seriola_lalandi_dorsalis
ENSIPUG00000009207lsm35798.276ENSSARG00000005275-10098.276Sorex_araneus
ENSIPUG00000009207lsm39397.895ENSSPUG00000017047-9997.895Sphenodon_punctatus
ENSIPUG00000009207lsm310086.275ENSSPUG00000005394LSM310086.275Sphenodon_punctatus
ENSIPUG00000009207lsm310086.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSIPUG00000009207lsm39574.227ENSSSCG00000023718-9974.227Sus_scrofa
ENSIPUG00000009207lsm310097.059ENSSSCG00000011601LSM310097.059Sus_scrofa
ENSIPUG00000009207lsm310096.078ENSTGUG00000008327LSM310096.078Taeniopygia_guttata
ENSIPUG00000009207lsm310097.059ENSTRUG00000023175lsm310097.059Takifugu_rubripes
ENSIPUG00000009207lsm310097.059ENSTNIG00000005589lsm310097.059Tetraodon_nigroviridis
ENSIPUG00000009207lsm310087.255ENSTBEG00000001050-9987.255Tupaia_belangeri
ENSIPUG00000009207lsm310097.059ENSTTRG00000011197LSM310097.059Tursiops_truncatus
ENSIPUG00000009207lsm310097.059ENSUAMG00000017250-10097.059Ursus_americanus
ENSIPUG00000009207lsm310097.059ENSUMAG00000015905LSM310097.059Ursus_maritimus
ENSIPUG00000009207lsm39397.895ENSVPAG00000010709LSM310097.895Vicugna_pacos
ENSIPUG00000009207lsm310092.157ENSVVUG00000029294-10092.157Vulpes_vulpes
ENSIPUG00000009207lsm310093.137ENSVVUG00000007332-9193.137Vulpes_vulpes
ENSIPUG00000009207lsm310092.157ENSVVUG00000006481-10092.157Vulpes_vulpes
ENSIPUG00000009207lsm310091.176ENSVVUG00000005684-10091.176Vulpes_vulpes
ENSIPUG00000009207lsm310088.235ENSVVUG00000024228-10088.235Vulpes_vulpes
ENSIPUG00000009207lsm310097.059ENSXETG00000011534lsm310097.059Xenopus_tropicalis
ENSIPUG00000009207lsm310098.039ENSXCOG00000017432LSM310098.039Xiphophorus_couchianus
ENSIPUG00000009207lsm310098.039ENSXMAG00000009151lsm310098.039Xiphophorus_maculatus

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