EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000009469 (Gene tree)
Gene ID: 108279173
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 5835 bases
Position: chr2:14700631-14706465
Accession: 108279173
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000013847	RRM_1	PF00076.22	1.7e-13	1	1
ENSIPUP00000013855	RRM_1	PF00076.22	1.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000014431	-	804	-	ENSIPUP00000013847	267 (aa)	-	-
ENSIPUT00000014439	-	1593	XM_017493202	ENSIPUP00000013855	275 (aa)	XP_017348691	A0A2D0T1N7

Gene Model

Click here to download ENSIPUG00000009469's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG
ipu03040	Spliceosome	KEGG
ipu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000009469's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000009469	alyref	100	55.197	ENSAPOG00000000183	-	100	55.556	Acanthochromis_polyacanthus
ENSIPUG00000009469	alyref	99	72.364	ENSACIG00000006351	alyref	98	71.841	Amphilophus_citrinellus
ENSIPUG00000009469	alyref	100	50.345	ENSACIG00000020351	-	100	52.234	Amphilophus_citrinellus
ENSIPUG00000009469	alyref	100	71.583	ENSAOCG00000014012	alyref	100	74.820	Amphiprion_ocellaris
ENSIPUG00000009469	alyref	100	54.480	ENSAOCG00000019305	-	100	55.556	Amphiprion_ocellaris
ENSIPUG00000009469	alyref	100	71.583	ENSAPEG00000014603	alyref	100	74.820	Amphiprion_percula
ENSIPUG00000009469	alyref	100	55.556	ENSAPEG00000013527	-	100	55.197	Amphiprion_percula
ENSIPUG00000009469	alyref	100	55.674	ENSATEG00000000382	-	100	53.546	Anabas_testudineus
ENSIPUG00000009469	alyref	100	73.050	ENSATEG00000004307	alyref	100	75.532	Anabas_testudineus
ENSIPUG00000009469	alyref	51	77.778	ENSAPLG00000014745	-	98	78.986	Anas_platyrhynchos
ENSIPUG00000009469	alyref	99	56.584	ENSACLG00000010184	-	100	57.746	Astatotilapia_calliptera
ENSIPUG00000009469	alyref	100	70.609	ENSACLG00000008432	alyref	100	72.043	Astatotilapia_calliptera
ENSIPUG00000009469	alyref	100	76.157	ENSAMXG00000007359	alyref	100	77.936	Astyanax_mexicanus
ENSIPUG00000009469	alyref	99	44.286	ENSCING00000013568	-	98	46.290	Ciona_intestinalis
ENSIPUG00000009469	alyref	99	47.253	ENSCSAVG00000003324	-	98	44.765	Ciona_savignyi
ENSIPUG00000009469	alyref	100	72.401	ENSCSEG00000017800	alyref	100	73.118	Cynoglossus_semilaevis
ENSIPUG00000009469	alyref	100	73.091	ENSCVAG00000014869	alyref	100	73.188	Cyprinodon_variegatus
ENSIPUG00000009469	alyref	100	48.014	ENSCVAG00000007789	-	100	46.263	Cyprinodon_variegatus
ENSIPUG00000009469	alyref	100	80.783	ENSDARG00000077732	alyref	100	80.714	Danio_rerio
ENSIPUG00000009469	alyref	96	47.535	FBgn0010774	Ref1	98	42.336	Drosophila_melanogaster
ENSIPUG00000009469	alyref	98	50.575	ENSEBUG00000008253	alyref	95	51.321	Eptatretus_burgeri
ENSIPUG00000009469	alyref	100	40.357	ENSEBUG00000006305	alyref	100	40.000	Eptatretus_burgeri
ENSIPUG00000009469	alyref	100	67.138	ENSELUG00000008849	-	100	65.018	Esox_lucius
ENSIPUG00000009469	alyref	100	76.727	ENSELUG00000017178	alyref	100	76.753	Esox_lucius
ENSIPUG00000009469	alyref	59	80.255	ENSFALG00000011923	-	98	79.747	Ficedula_albicollis
ENSIPUG00000009469	alyref	100	75.636	ENSFHEG00000019426	alyref	100	74.182	Fundulus_heteroclitus
ENSIPUG00000009469	alyref	100	48.014	ENSFHEG00000004698	-	100	47.312	Fundulus_heteroclitus
ENSIPUG00000009469	alyref	99	68.539	ENSGMOG00000009882	alyref	100	67.416	Gadus_morhua
ENSIPUG00000009469	alyref	68	56.853	ENSGMOG00000013122	-	100	58.115	Gadus_morhua
ENSIPUG00000009469	alyref	100	75.000	ENSGAFG00000006014	alyref	100	74.275	Gambusia_affinis
ENSIPUG00000009469	alyref	100	46.931	ENSGAFG00000007573	-	100	45.878	Gambusia_affinis
ENSIPUG00000009469	alyref	100	70.609	ENSHBUG00000020196	alyref	100	72.043	Haplochromis_burtoni
ENSIPUG00000009469	alyref	99	58.304	ENSHBUG00000001454	-	100	58.392	Haplochromis_burtoni
ENSIPUG00000009469	alyref	100	50.179	ENSHCOG00000012825	-	97	48.399	Hippocampus_comes
ENSIPUG00000009469	alyref	71	71.354	ENSSTOG00000016570	-	98	71.503	Ictidomys_tridecemlineatus
ENSIPUG00000009469	alyref	100	73.285	ENSKMAG00000008912	alyref	100	75.451	Kryptolebias_marmoratus
ENSIPUG00000009469	alyref	100	50.719	ENSKMAG00000006462	-	100	50.534	Kryptolebias_marmoratus
ENSIPUG00000009469	alyref	100	48.505	ENSLBEG00000005387	-	100	49.492	Labrus_bergylta
ENSIPUG00000009469	alyref	100	72.662	ENSLBEG00000023118	alyref	90	74.101	Labrus_bergylta
ENSIPUG00000009469	alyref	98	51.460	ENSLBEG00000012930	-	99	50.929	Labrus_bergylta
ENSIPUG00000009469	alyref	77	75.688	ENSLOCG00000013879	alyref	89	76.606	Lepisosteus_oculatus
ENSIPUG00000009469	alyref	100	72.760	ENSMAMG00000003034	alyref	100	72.857	Mastacembelus_armatus
ENSIPUG00000009469	alyref	100	51.429	ENSMAMG00000005464	-	100	52.857	Mastacembelus_armatus
ENSIPUG00000009469	alyref	99	56.584	ENSMZEG00005012096	-	100	57.394	Maylandia_zebra
ENSIPUG00000009469	alyref	100	70.609	ENSMZEG00005008639	alyref	100	72.043	Maylandia_zebra
ENSIPUG00000009469	alyref	99	79.779	ENSMMOG00000012458	alyref	97	77.818	Mola_mola
ENSIPUG00000009469	alyref	99	49.091	ENSMMOG00000007032	-	99	44.406	Mola_mola
ENSIPUG00000009469	alyref	100	52.941	ENSMALG00000006054	-	100	52.265	Monopterus_albus
ENSIPUG00000009469	alyref	99	59.341	ENSMLUG00000006521	-	100	59.124	Myotis_lucifugus
ENSIPUG00000009469	alyref	99	60.517	ENSMLUG00000014372	-	100	58.608	Myotis_lucifugus
ENSIPUG00000009469	alyref	97	56.604	ENSMLUG00000030671	-	98	56.981	Myotis_lucifugus
ENSIPUG00000009469	alyref	97	54.275	ENSMLUG00000028605	-	98	56.506	Myotis_lucifugus
ENSIPUG00000009469	alyref	97	56.322	ENSMLUG00000022178	-	98	57.088	Myotis_lucifugus
ENSIPUG00000009469	alyref	97	56.015	ENSMLUG00000009247	-	77	61.576	Myotis_lucifugus
ENSIPUG00000009469	alyref	97	55.351	ENSMLUG00000022467	-	98	54.015	Myotis_lucifugus
ENSIPUG00000009469	alyref	100	58.451	ENSMLUG00000004098	-	100	58.608	Myotis_lucifugus
ENSIPUG00000009469	alyref	99	69.697	ENSNGAG00000022014	-	100	69.318	Nannospalax_galili
ENSIPUG00000009469	alyref	100	73.477	ENSNBRG00000001747	alyref	100	74.910	Neolamprologus_brichardi
ENSIPUG00000009469	alyref	99	56.989	ENSNBRG00000017460	-	100	58.511	Neolamprologus_brichardi
ENSIPUG00000009469	alyref	100	75.532	ENSONIG00000019434	alyref	100	74.823	Oreochromis_niloticus
ENSIPUG00000009469	alyref	99	58.484	ENSONIG00000003296	-	100	58.657	Oreochromis_niloticus
ENSIPUG00000009469	alyref	99	40.923	ENSORLG00000001620	-	60	47.534	Oryzias_latipes
ENSIPUG00000009469	alyref	99	48.763	ENSORLG00020015673	-	99	46.786	Oryzias_latipes_hni
ENSIPUG00000009469	alyref	100	73.551	ENSORLG00020011942	alyref	100	74.182	Oryzias_latipes_hni
ENSIPUG00000009469	alyref	99	49.123	ENSORLG00015015143	-	98	48.897	Oryzias_latipes_hsok
ENSIPUG00000009469	alyref	100	72.826	ENSORLG00015022664	alyref	100	73.455	Oryzias_latipes_hsok
ENSIPUG00000009469	alyref	99	51.264	ENSOMEG00000007158	-	97	50.000	Oryzias_melastigma
ENSIPUG00000009469	alyref	100	74.909	ENSOMEG00000019176	alyref	100	76.000	Oryzias_melastigma
ENSIPUG00000009469	alyref	67	82.584	ENSPPAG00000036403	-	73	79.167	Pan_paniscus
ENSIPUG00000009469	alyref	99	73.818	ENSPKIG00000006233	-	81	73.897	Paramormyrops_kingsleyae
ENSIPUG00000009469	alyref	100	74.909	ENSPKIG00000007070	alyref	100	77.239	Paramormyrops_kingsleyae
ENSIPUG00000009469	alyref	99	73.818	ENSPMGG00000016600	alyref	91	73.913	Periophthalmus_magnuspinnatus
ENSIPUG00000009469	alyref	73	48.756	ENSPMGG00000012994	-	70	60.656	Periophthalmus_magnuspinnatus
ENSIPUG00000009469	alyref	99	66.288	ENSPEMG00000016628	-	100	65.530	Peromyscus_maniculatus_bairdii
ENSIPUG00000009469	alyref	100	47.292	ENSPFOG00000017094	-	100	45.878	Poecilia_formosa
ENSIPUG00000009469	alyref	100	71.119	ENSPFOG00000022825	alyref	99	72.924	Poecilia_formosa
ENSIPUG00000009469	alyref	100	47.292	ENSPLAG00000014380	-	100	45.878	Poecilia_latipinna
ENSIPUG00000009469	alyref	100	70.652	ENSPLAG00000006948	alyref	100	74.275	Poecilia_latipinna
ENSIPUG00000009469	alyref	100	47.292	ENSPMEG00000023039	-	100	45.878	Poecilia_mexicana
ENSIPUG00000009469	alyref	100	71.119	ENSPMEG00000003547	alyref	100	72.924	Poecilia_mexicana
ENSIPUG00000009469	alyref	100	70.290	ENSPREG00000015795	alyref	100	74.275	Poecilia_reticulata
ENSIPUG00000009469	alyref	100	48.727	ENSPREG00000003649	-	100	48.708	Poecilia_reticulata
ENSIPUG00000009469	alyref	98	54.348	ENSPNYG00000002879	-	98	55.914	Pundamilia_nyererei
ENSIPUG00000009469	alyref	100	70.609	ENSPNYG00000017498	alyref	100	72.043	Pundamilia_nyererei
ENSIPUG00000009469	alyref	100	80.935	ENSPNAG00000002531	alyref	100	85.294	Pygocentrus_nattereri
ENSIPUG00000009469	alyref	72	78.010	ENSSBOG00000030924	-	87	79.144	Saimiri_boliviensis_boliviensis
ENSIPUG00000009469	alyref	98	60.902	ENSSHAG00000000609	-	99	56.089	Sarcophilus_harrisii
ENSIPUG00000009469	alyref	98	59.023	ENSSHAG00000012866	-	77	63.054	Sarcophilus_harrisii
ENSIPUG00000009469	alyref	69	79.474	ENSSFOG00015003678	alyref	83	80.108	Scleropages_formosus
ENSIPUG00000009469	alyref	77	83.962	ENSSFOG00015003923	alyref	73	83.981	Scleropages_formosus
ENSIPUG00000009469	alyref	100	72.202	ENSSMAG00000009283	alyref	100	75.451	Scophthalmus_maximus
ENSIPUG00000009469	alyref	100	50.871	ENSSMAG00000011169	-	100	55.941	Scophthalmus_maximus
ENSIPUG00000009469	alyref	100	71.942	ENSSDUG00000016158	alyref	100	75.180	Seriola_dumerili
ENSIPUG00000009469	alyref	100	70.609	ENSSLDG00000017803	alyref	100	73.835	Seriola_lalandi_dorsalis
ENSIPUG00000009469	alyref	99	56.364	ENSSPAG00000017028	-	96	56.204	Stegastes_partitus
ENSIPUG00000009469	alyref	99	51.429	ENSTRUG00000003051	-	100	51.429	Takifugu_rubripes
ENSIPUG00000009469	alyref	100	67.857	ENSTNIG00000011595	alyref	100	66.071	Tetraodon_nigroviridis
ENSIPUG00000009469	alyref	100	51.079	ENSTNIG00000014136	-	100	46.909	Tetraodon_nigroviridis
ENSIPUG00000009469	alyref	89	65.546	ENSVVUG00000000272	-	82	80.663	Vulpes_vulpes
ENSIPUG00000009469	alyref	99	73.993	ENSXCOG00000018047	alyref	99	72.464	Xiphophorus_couchianus
ENSIPUG00000009469	alyref	100	46.570	ENSXMAG00000018086	-	99	47.015	Xiphophorus_maculatus
ENSIPUG00000009469	alyref	99	73.993	ENSXMAG00000012218	alyref	99	72.464	Xiphophorus_maculatus