EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000009661 (Gene tree)
Gene ID: 108263753
Gene Symbol: srbd1
Alias: FLJ10379
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 71405 bases
Position: chr3:23703669-23775073
Accession: 108263753
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000014270	S1	PF00575.23	1.5e-10	1	1
ENSIPUP00000014204	S1	PF00575.23	1.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000014802	-	4227	XM_017464862	ENSIPUP00000014204	979 (aa)	XP_017320351	A0A2D0QPL7
ENSIPUT00000014867	-	2883	-	ENSIPUP00000014270	960 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000009661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000009661's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000009661	srbd1	95	56.128	ENSG00000068784	SRBD1	85	60.915	Homo_sapiens
ENSIPUG00000009661	srbd1	100	64.082	ENSAPOG00000005103	si:ch211-117n7.8	100	63.717	Acanthochromis_polyacanthus
ENSIPUG00000009661	srbd1	93	57.516	ENSAMEG00000005993	SRBD1	85	61.602	Ailuropoda_melanoleuca
ENSIPUG00000009661	srbd1	97	64.516	ENSACIG00000009875	si:ch211-117n7.8	97	65.109	Amphilophus_citrinellus
ENSIPUG00000009661	srbd1	100	63.475	ENSAOCG00000024718	si:ch211-117n7.8	100	63.007	Amphiprion_ocellaris
ENSIPUG00000009661	srbd1	95	66.807	ENSAPEG00000002645	si:ch211-117n7.8	99	65.933	Amphiprion_percula
ENSIPUG00000009661	srbd1	100	63.781	ENSATEG00000010844	si:ch211-117n7.8	94	65.328	Anabas_testudineus
ENSIPUG00000009661	srbd1	94	57.188	ENSAPLG00000006313	SRBD1	85	61.972	Anas_platyrhynchos
ENSIPUG00000009661	srbd1	97	55.771	ENSANAG00000025573	SRBD1	85	60.563	Aotus_nancymaae
ENSIPUG00000009661	srbd1	100	63.965	ENSACLG00000024219	si:ch211-117n7.8	100	63.796	Astatotilapia_calliptera
ENSIPUG00000009661	srbd1	99	79.577	ENSAMXG00000004294	SRBD1	99	79.276	Astyanax_mexicanus
ENSIPUG00000009661	srbd1	85	60.443	ENSBTAG00000007508	SRBD1	83	60.443	Bos_taurus
ENSIPUG00000009661	srbd1	97	55.771	ENSCJAG00000000727	SRBD1	85	60.563	Callithrix_jacchus
ENSIPUG00000009661	srbd1	94	56.936	ENSCAFG00000002554	SRBD1	85	61.385	Canis_familiaris
ENSIPUG00000009661	srbd1	85	62.156	ENSCAFG00020026284	SRBD1	98	62.156	Canis_lupus_dingo
ENSIPUG00000009661	srbd1	85	60.210	ENSCHIG00000016535	SRBD1	84	60.210	Capra_hircus
ENSIPUG00000009661	srbd1	95	56.360	ENSTSYG00000012797	SRBD1	96	56.179	Carlito_syrichta
ENSIPUG00000009661	srbd1	99	55.355	ENSCPOG00000004773	SRBD1	87	60.698	Cavia_porcellus
ENSIPUG00000009661	srbd1	97	55.873	ENSCCAG00000025589	SRBD1	85	60.798	Cebus_capucinus
ENSIPUG00000009661	srbd1	95	56.276	ENSCATG00000039530	SRBD1	96	56.198	Cercocebus_atys
ENSIPUG00000009661	srbd1	95	57.884	ENSCLAG00000008623	SRBD1	87	61.556	Chinchilla_lanigera
ENSIPUG00000009661	srbd1	95	56.276	ENSCSAG00000013350	SRBD1	85	61.150	Chlorocebus_sabaeus
ENSIPUG00000009661	srbd1	83	70.000	ENSCHOG00000003805	SRBD1	71	70.000	Choloepus_hoffmanni
ENSIPUG00000009661	srbd1	85	61.013	ENSCPBG00000005677	SRBD1	86	61.720	Chrysemys_picta_bellii
ENSIPUG00000009661	srbd1	79	39.747	ENSCING00000005950	-	99	39.747	Ciona_intestinalis
ENSIPUG00000009661	srbd1	79	43.295	ENSCSAVG00000000861	-	99	43.295	Ciona_savignyi
ENSIPUG00000009661	srbd1	95	56.256	ENSCANG00000016307	SRBD1	85	60.915	Colobus_angolensis_palliatus
ENSIPUG00000009661	srbd1	85	61.045	ENSCGRG00001000513	Srbd1	85	61.045	Cricetulus_griseus_chok1gshd
ENSIPUG00000009661	srbd1	85	61.045	ENSCGRG00000002283	Srbd1	85	61.045	Cricetulus_griseus_crigri
ENSIPUG00000009661	srbd1	99	61.416	ENSCSEG00000000856	si:ch211-117n7.8	94	63.407	Cynoglossus_semilaevis
ENSIPUG00000009661	srbd1	85	70.519	ENSCVAG00000020212	si:ch211-117n7.8	90	70.519	Cyprinodon_variegatus
ENSIPUG00000009661	srbd1	85	60.539	ENSDNOG00000018686	SRBD1	85	60.539	Dasypus_novemcinctus
ENSIPUG00000009661	srbd1	85	61.356	ENSDORG00000010468	Srbd1	85	61.356	Dipodomys_ordii
ENSIPUG00000009661	srbd1	79	35.732	FBgn0051156	CG31156	79	35.741	Drosophila_melanogaster
ENSIPUG00000009661	srbd1	86	60.036	ENSETEG00000000739	SRBD1	90	60.766	Echinops_telfairi
ENSIPUG00000009661	srbd1	74	48.615	ENSEBUG00000008902	si:ch211-117n7.8	96	48.615	Eptatretus_burgeri
ENSIPUG00000009661	srbd1	95	54.180	ENSEASG00005003132	SRBD1	98	60.606	Equus_asinus_asinus
ENSIPUG00000009661	srbd1	95	56.037	ENSECAG00000013865	SRBD1	94	55.728	Equus_caballus
ENSIPUG00000009661	srbd1	99	66.956	ENSELUG00000012592	si:ch211-117n7.8	99	66.344	Esox_lucius
ENSIPUG00000009661	srbd1	94	56.315	ENSFCAG00000005101	SRBD1	85	61.079	Felis_catus
ENSIPUG00000009661	srbd1	87	61.387	ENSFALG00000012966	SRBD1	88	61.387	Ficedula_albicollis
ENSIPUG00000009661	srbd1	95	58.102	ENSFDAG00000016670	SRBD1	97	57.844	Fukomys_damarensis
ENSIPUG00000009661	srbd1	100	63.539	ENSFHEG00000019480	si:ch211-117n7.8	85	68.851	Fundulus_heteroclitus
ENSIPUG00000009661	srbd1	51	66.901	ENSGMOG00000018010	-	100	66.901	Gadus_morhua
ENSIPUG00000009661	srbd1	85	62.309	ENSGALG00000009990	SRBD1	86	62.309	Gallus_gallus
ENSIPUG00000009661	srbd1	100	64.363	ENSGAFG00000019664	si:ch211-117n7.8	100	62.916	Gambusia_affinis
ENSIPUG00000009661	srbd1	63	70.774	ENSGACG00000010794	si:ch211-117n7.8	100	71.677	Gasterosteus_aculeatus
ENSIPUG00000009661	srbd1	84	61.962	ENSGAGG00000006166	SRBD1	99	61.962	Gopherus_agassizii
ENSIPUG00000009661	srbd1	95	56.186	ENSGGOG00000005910	SRBD1	87	60.915	Gorilla_gorilla
ENSIPUG00000009661	srbd1	97	58.125	ENSHBUG00000013207	si:ch211-117n7.8	98	58.431	Haplochromis_burtoni
ENSIPUG00000009661	srbd1	99	55.644	ENSHGLG00000018153	-	96	57.368	Heterocephalus_glaber_female
ENSIPUG00000009661	srbd1	99	55.544	ENSHGLG00100015183	-	96	57.263	Heterocephalus_glaber_male
ENSIPUG00000009661	srbd1	93	57.367	ENSSTOG00000005898	SRBD1	85	62.426	Ictidomys_tridecemlineatus
ENSIPUG00000009661	srbd1	97	53.043	ENSJJAG00000022244	Srbd1	96	53.927	Jaculus_jaculus
ENSIPUG00000009661	srbd1	99	63.591	ENSKMAG00000003473	si:ch211-117n7.8	94	64.942	Kryptolebias_marmoratus
ENSIPUG00000009661	srbd1	100	64.659	ENSLBEG00000027518	si:ch211-117n7.8	94	66.143	Labrus_bergylta
ENSIPUG00000009661	srbd1	85	61.294	ENSLACG00000009790	SRBD1	99	61.294	Latimeria_chalumnae
ENSIPUG00000009661	srbd1	92	67.600	ENSLOCG00000016360	si:ch211-117n7.8	95	66.178	Lepisosteus_oculatus
ENSIPUG00000009661	srbd1	95	56.276	ENSMFAG00000042026	SRBD1	85	61.150	Macaca_fascicularis
ENSIPUG00000009661	srbd1	97	55.873	ENSMMUG00000003490	SRBD1	85	61.150	Macaca_mulatta
ENSIPUG00000009661	srbd1	95	55.247	ENSMNEG00000034701	SRBD1	85	59.859	Macaca_nemestrina
ENSIPUG00000009661	srbd1	95	56.276	ENSMLEG00000000745	SRBD1	85	61.150	Mandrillus_leucophaeus
ENSIPUG00000009661	srbd1	100	62.661	ENSMAMG00000021921	si:ch211-117n7.8	94	65.437	Mastacembelus_armatus
ENSIPUG00000009661	srbd1	100	63.867	ENSMZEG00005027369	si:ch211-117n7.8	100	63.894	Maylandia_zebra
ENSIPUG00000009661	srbd1	80	60.100	ENSMGAG00000010273	SRBD1	100	60.100	Meleagris_gallopavo
ENSIPUG00000009661	srbd1	79	58.816	ENSMAUG00000013916	Srbd1	95	58.816	Mesocricetus_auratus
ENSIPUG00000009661	srbd1	95	56.788	ENSMICG00000007835	SRBD1	96	56.198	Microcebus_murinus
ENSIPUG00000009661	srbd1	97	53.970	ENSMOCG00000018716	Srbd1	85	60.570	Microtus_ochrogaster
ENSIPUG00000009661	srbd1	97	63.244	ENSMMOG00000007507	si:ch211-117n7.8	97	63.541	Mola_mola
ENSIPUG00000009661	srbd1	100	64.027	ENSMALG00000001562	si:ch211-117n7.8	94	65.177	Monopterus_albus
ENSIPUG00000009661	srbd1	85	60.000	MGP_CAROLIEiJ_G0021934	Srbd1	99	60.197	Mus_caroli
ENSIPUG00000009661	srbd1	85	59.881	ENSMUSG00000024135	Srbd1	99	57.513	Mus_musculus
ENSIPUG00000009661	srbd1	96	53.340	MGP_PahariEiJ_G0020924	Srbd1	85	59.405	Mus_pahari
ENSIPUG00000009661	srbd1	96	54.049	MGP_SPRETEiJ_G0022850	Srbd1	85	60.000	Mus_spretus
ENSIPUG00000009661	srbd1	94	56.660	ENSMLUG00000007039	SRBD1	87	60.343	Myotis_lucifugus
ENSIPUG00000009661	srbd1	99	53.095	ENSNGAG00000011893	Srbd1	96	54.462	Nannospalax_galili
ENSIPUG00000009661	srbd1	97	65.441	ENSNBRG00000012873	si:ch211-117n7.8	98	65.882	Neolamprologus_brichardi
ENSIPUG00000009661	srbd1	95	56.095	ENSNLEG00000016877	SRBD1	85	60.681	Nomascus_leucogenys
ENSIPUG00000009661	srbd1	85	60.782	ENSODEG00000012095	SRBD1	87	60.782	Octodon_degus
ENSIPUG00000009661	srbd1	100	64.614	ENSONIG00000000945	si:ch211-117n7.8	100	70.952	Oreochromis_niloticus
ENSIPUG00000009661	srbd1	99	54.762	ENSOCUG00000015385	SRBD1	85	61.105	Oryctolagus_cuniculus
ENSIPUG00000009661	srbd1	100	59.863	ENSORLG00000004427	si:ch211-117n7.8	86	64.520	Oryzias_latipes
ENSIPUG00000009661	srbd1	100	62.329	ENSORLG00020012792	si:ch211-117n7.8	87	67.156	Oryzias_latipes_hni
ENSIPUG00000009661	srbd1	100	62.353	ENSORLG00015018598	si:ch211-117n7.8	87	67.119	Oryzias_latipes_hsok
ENSIPUG00000009661	srbd1	100	62.635	ENSOMEG00000012229	si:ch211-117n7.8	93	66.923	Oryzias_melastigma
ENSIPUG00000009661	srbd1	95	53.767	ENSOGAG00000001076	SRBD1	85	58.568	Otolemur_garnettii
ENSIPUG00000009661	srbd1	85	56.278	ENSOARG00000005958	SRBD1	86	56.278	Ovis_aries
ENSIPUG00000009661	srbd1	95	55.773	ENSPPAG00000038442	SRBD1	85	60.798	Pan_paniscus
ENSIPUG00000009661	srbd1	94	56.477	ENSPPRG00000003449	SRBD1	85	61.268	Panthera_pardus
ENSIPUG00000009661	srbd1	91	58.617	ENSPTIG00000012495	SRBD1	96	56.140	Panthera_tigris_altaica
ENSIPUG00000009661	srbd1	95	55.876	ENSPTRG00000011889	SRBD1	85	60.915	Pan_troglodytes
ENSIPUG00000009661	srbd1	95	56.379	ENSPANG00000008063	SRBD1	85	61.268	Papio_anubis
ENSIPUG00000009661	srbd1	96	66.632	ENSPKIG00000021973	si:ch211-117n7.8	95	66.667	Paramormyrops_kingsleyae
ENSIPUG00000009661	srbd1	85	61.013	ENSPSIG00000008992	SRBD1	86	61.013	Pelodiscus_sinensis
ENSIPUG00000009661	srbd1	91	63.865	ENSPMGG00000013348	si:ch211-117n7.8	95	63.462	Periophthalmus_magnuspinnatus
ENSIPUG00000009661	srbd1	85	59.096	ENSPEMG00000020684	Srbd1	85	59.096	Peromyscus_maniculatus_bairdii
ENSIPUG00000009661	srbd1	100	64.694	ENSPFOG00000010650	si:ch211-117n7.8	100	64.462	Poecilia_formosa
ENSIPUG00000009661	srbd1	100	64.793	ENSPLAG00000002141	si:ch211-117n7.8	100	64.130	Poecilia_latipinna
ENSIPUG00000009661	srbd1	100	64.793	ENSPMEG00000018537	si:ch211-117n7.8	100	64.561	Poecilia_mexicana
ENSIPUG00000009661	srbd1	100	64.806	ENSPREG00000003258	si:ch211-117n7.8	100	64.271	Poecilia_reticulata
ENSIPUG00000009661	srbd1	95	52.473	ENSPPYG00000012444	SRBD1	85	56.360	Pongo_abelii
ENSIPUG00000009661	srbd1	76	56.000	ENSPCAG00000005629	SRBD1	80	56.000	Procavia_capensis
ENSIPUG00000009661	srbd1	95	49.013	ENSPCOG00000017669	SRBD1	96	47.870	Propithecus_coquereli
ENSIPUG00000009661	srbd1	91	59.452	ENSPVAG00000001782	SRBD1	84	59.452	Pteropus_vampyrus
ENSIPUG00000009661	srbd1	97	63.808	ENSPNYG00000000508	si:ch211-117n7.8	99	63.762	Pundamilia_nyererei
ENSIPUG00000009661	srbd1	99	79.717	ENSPNAG00000013492	SRBD1	99	79.516	Pygocentrus_nattereri
ENSIPUG00000009661	srbd1	85	59.167	ENSRNOG00000014720	Srbd1	85	59.643	Rattus_norvegicus
ENSIPUG00000009661	srbd1	95	55.967	ENSRBIG00000033486	SRBD1	85	60.798	Rhinopithecus_bieti
ENSIPUG00000009661	srbd1	95	55.967	ENSRROG00000041599	SRBD1	85	60.798	Rhinopithecus_roxellana
ENSIPUG00000009661	srbd1	85	60.446	ENSSBOG00000024982	SRBD1	85	60.446	Saimiri_boliviensis_boliviensis
ENSIPUG00000009661	srbd1	97	64.885	ENSSFOG00015001128	si:ch211-117n7.8	91	70.694	Scleropages_formosus
ENSIPUG00000009661	srbd1	99	62.305	ENSSMAG00000018256	si:ch211-117n7.8	94	63.768	Scophthalmus_maximus
ENSIPUG00000009661	srbd1	93	65.456	ENSSLDG00000023189	si:ch211-117n7.8	97	64.381	Seriola_lalandi_dorsalis
ENSIPUG00000009661	srbd1	94	52.513	ENSSARG00000009740	SRBD1	86	55.924	Sorex_araneus
ENSIPUG00000009661	srbd1	85	62.007	ENSSPUG00000010475	SRBD1	94	62.007	Sphenodon_punctatus
ENSIPUG00000009661	srbd1	92	65.339	ENSSPAG00000008092	-	92	65.245	Stegastes_partitus
ENSIPUG00000009661	srbd1	94	56.790	ENSSSCG00000008445	SRBD1	94	55.951	Sus_scrofa
ENSIPUG00000009661	srbd1	84	61.722	ENSTGUG00000003878	SRBD1	100	61.722	Taeniopygia_guttata
ENSIPUG00000009661	srbd1	99	61.591	ENSTRUG00000007080	si:ch211-117n7.8	98	66.704	Takifugu_rubripes
ENSIPUG00000009661	srbd1	97	61.066	ENSTNIG00000007464	si:ch211-117n7.8	84	66.550	Tetraodon_nigroviridis
ENSIPUG00000009661	srbd1	76	80.851	ENSTBEG00000004556	SRBD1	65	80.851	Tupaia_belangeri
ENSIPUG00000009661	srbd1	78	62.304	ENSTTRG00000011871	SRBD1	77	62.304	Tursiops_truncatus
ENSIPUG00000009661	srbd1	97	55.736	ENSUAMG00000008126	SRBD1	97	57.971	Ursus_americanus
ENSIPUG00000009661	srbd1	97	56.282	ENSUMAG00000012902	SRBD1	84	61.222	Ursus_maritimus
ENSIPUG00000009661	srbd1	88	59.368	ENSVPAG00000006825	SRBD1	97	59.368	Vicugna_pacos
ENSIPUG00000009661	srbd1	94	56.535	ENSVVUG00000005389	SRBD1	90	58.797	Vulpes_vulpes
ENSIPUG00000009661	srbd1	98	46.432	ENSXETG00000002760	srbd1	96	47.528	Xenopus_tropicalis
ENSIPUG00000009661	srbd1	100	64.377	ENSXMAG00000016861	si:ch211-117n7.8	100	63.148	Xiphophorus_maculatus