EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000010309 (Gene tree)
Gene ID: 108278762
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 6436 bases
Position: chr18:23372134-23378569
Accession: 108278762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000015155	TruB_N	PF01509.18	2.2e-21	1	1
ENSIPUP00000015182	TruB_N	PF01509.18	2.4e-21	1	1
ENSIPUP00000015130	TruB_N	PF01509.18	1.3e-20	1	1
ENSIPUP00000015155	PUA	PF01472.20	1e-16	1	1
ENSIPUP00000015182	PUA	PF01472.20	1.2e-16	1	1
ENSIPUP00000015130	PUA	PF01472.20	2.6e-16	1	1
ENSIPUP00000015130	DKCLD	PF08068.12	7.7e-31	1	1
ENSIPUP00000015155	DKCLD	PF08068.12	9.8e-31	1	1
ENSIPUP00000015182	DKCLD	PF08068.12	9.8e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000015793	-	2224	-	ENSIPUP00000015155	596 (aa)	-	-
ENSIPUT00000015765	-	1987	XM_017492319	ENSIPUP00000015130	517 (aa)	XP_017347808	A0A2D0SYQ8
ENSIPUT00000015821	-	1785	-	ENSIPUP00000015182	594 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000010309's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000010309's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000010309	dkc1	88	79.348	ENSG00000130826	DKC1	99	86.893	Homo_sapiens
ENSIPUG00000010309	dkc1	97	81.400	ENSAPOG00000007799	dkc1	88	85.558	Acanthochromis_polyacanthus
ENSIPUG00000010309	dkc1	87	79.521	ENSAMEG00000002776	DKC1	92	78.105	Ailuropoda_melanoleuca
ENSIPUG00000010309	dkc1	93	82.158	ENSACIG00000022614	dkc1	85	90.580	Amphilophus_citrinellus
ENSIPUG00000010309	dkc1	99	80.851	ENSAOCG00000013159	dkc1	86	88.124	Amphiprion_ocellaris
ENSIPUG00000010309	dkc1	99	80.851	ENSAPEG00000002284	dkc1	86	88.124	Amphiprion_percula
ENSIPUG00000010309	dkc1	86	82.667	ENSATEG00000013682	dkc1	89	82.328	Anabas_testudineus
ENSIPUG00000010309	dkc1	85	81.124	ENSACAG00000015600	DKC1	76	81.633	Anolis_carolinensis
ENSIPUG00000010309	dkc1	88	78.448	ENSANAG00000022732	DKC1	90	78.618	Aotus_nancymaae
ENSIPUG00000010309	dkc1	90	84.301	ENSACLG00000015605	dkc1	80	92.875	Astatotilapia_calliptera
ENSIPUG00000010309	dkc1	89	93.059	ENSAMXG00000017108	dkc1	87	93.013	Astyanax_mexicanus
ENSIPUG00000010309	dkc1	88	78.664	ENSBTAG00000013045	DKC1	91	78.834	Bos_taurus
ENSIPUG00000010309	dkc1	79	65.207	WBGene00010478	K01G5.5	97	62.963	Caenorhabditis_elegans
ENSIPUG00000010309	dkc1	88	79.437	ENSCJAG00000004210	DKC1	90	79.437	Callithrix_jacchus
ENSIPUG00000010309	dkc1	84	80.822	ENSCAFG00000019620	-	84	80.822	Canis_familiaris
ENSIPUG00000010309	dkc1	83	71.560	ENSCAFG00000009311	-	86	71.560	Canis_familiaris
ENSIPUG00000010309	dkc1	94	65.377	ENSCAFG00020009379	-	91	65.510	Canis_lupus_dingo
ENSIPUG00000010309	dkc1	84	80.822	ENSCAFG00020008918	-	84	80.822	Canis_lupus_dingo
ENSIPUG00000010309	dkc1	88	78.879	ENSCHIG00000017392	DKC1	91	79.050	Capra_hircus
ENSIPUG00000010309	dkc1	84	80.846	ENSTSYG00000007681	DKC1	85	80.357	Carlito_syrichta
ENSIPUG00000010309	dkc1	77	82.294	ENSCAPG00000003342	DKC1	91	82.294	Cavia_aperea
ENSIPUG00000010309	dkc1	88	78.696	ENSCPOG00000008825	DKC1	86	80.866	Cavia_porcellus
ENSIPUG00000010309	dkc1	88	70.346	ENSCCAG00000027418	DKC1	89	70.346	Cebus_capucinus
ENSIPUG00000010309	dkc1	88	79.348	ENSCATG00000033602	DKC1	89	79.348	Cercocebus_atys
ENSIPUG00000010309	dkc1	84	80.822	ENSCLAG00000000720	DKC1	86	80.822	Chinchilla_lanigera
ENSIPUG00000010309	dkc1	88	79.348	ENSCSAG00000006706	DKC1	89	79.348	Chlorocebus_sabaeus
ENSIPUG00000010309	dkc1	89	79.266	ENSCPBG00000005858	DKC1	89	84.135	Chrysemys_picta_bellii
ENSIPUG00000010309	dkc1	81	77.700	ENSCING00000004599	-	83	77.389	Ciona_intestinalis
ENSIPUG00000010309	dkc1	85	72.912	ENSCSAVG00000010047	-	95	75.708	Ciona_savignyi
ENSIPUG00000010309	dkc1	88	79.348	ENSCANG00000027987	DKC1	89	79.348	Colobus_angolensis_palliatus
ENSIPUG00000010309	dkc1	84	80.909	ENSCGRG00001014574	-	85	80.909	Cricetulus_griseus_chok1gshd
ENSIPUG00000010309	dkc1	75	65.128	ENSCGRG00001016789	-	79	67.209	Cricetulus_griseus_chok1gshd
ENSIPUG00000010309	dkc1	75	65.128	ENSCGRG00000014809	-	77	67.302	Cricetulus_griseus_crigri
ENSIPUG00000010309	dkc1	84	80.909	ENSCGRG00000016075	-	85	80.909	Cricetulus_griseus_crigri
ENSIPUG00000010309	dkc1	78	89.578	ENSCSEG00000012633	dkc1	85	89.950	Cynoglossus_semilaevis
ENSIPUG00000010309	dkc1	86	85.843	ENSCVAG00000010155	dkc1	84	87.927	Cyprinodon_variegatus
ENSIPUG00000010309	dkc1	82	92.000	ENSDARG00000016484	dkc1	88	89.648	Danio_rerio
ENSIPUG00000010309	dkc1	88	78.925	ENSDNOG00000004218	DKC1	86	80.856	Dasypus_novemcinctus
ENSIPUG00000010309	dkc1	57	69.667	ENSDORG00000013566	-	92	72.401	Dipodomys_ordii
ENSIPUG00000010309	dkc1	87	69.469	FBgn0259937	Nop60B	98	68.468	Drosophila_melanogaster
ENSIPUG00000010309	dkc1	77	84.673	ENSETEG00000016095	DKC1	89	78.311	Echinops_telfairi
ENSIPUG00000010309	dkc1	62	80.251	ENSEBUG00000015962	dkc1	98	81.100	Eptatretus_burgeri
ENSIPUG00000010309	dkc1	87	76.759	ENSEASG00005007484	DKC1	90	76.759	Equus_asinus_asinus
ENSIPUG00000010309	dkc1	91	76.050	ENSECAG00000023524	DKC1	90	76.759	Equus_caballus
ENSIPUG00000010309	dkc1	76	85.496	ENSEEUG00000003323	DKC1	99	82.185	Erinaceus_europaeus
ENSIPUG00000010309	dkc1	88	87.555	ENSELUG00000014538	dkc1	88	87.773	Esox_lucius
ENSIPUG00000010309	dkc1	78	84.615	ENSFCAG00000006577	DKC1	86	80.645	Felis_catus
ENSIPUG00000010309	dkc1	84	82.727	ENSFALG00000011496	DKC1	85	82.511	Ficedula_albicollis
ENSIPUG00000010309	dkc1	84	81.193	ENSFDAG00000002516	DKC1	85	81.364	Fukomys_damarensis
ENSIPUG00000010309	dkc1	88	84.902	ENSFHEG00000004627	dkc1	89	85.120	Fundulus_heteroclitus
ENSIPUG00000010309	dkc1	76	88.747	ENSGMOG00000017277	dkc1	100	88.747	Gadus_morhua
ENSIPUG00000010309	dkc1	87	82.119	ENSGALG00000005054	DKC1	89	81.385	Gallus_gallus
ENSIPUG00000010309	dkc1	85	85.714	ENSGAFG00000011486	dkc1	77	84.902	Gambusia_affinis
ENSIPUG00000010309	dkc1	79	90.954	ENSGACG00000004373	dkc1	96	93.009	Gasterosteus_aculeatus
ENSIPUG00000010309	dkc1	85	82.127	ENSGAGG00000011330	DKC1	89	80.435	Gopherus_agassizii
ENSIPUG00000010309	dkc1	88	79.348	ENSGGOG00000001045	DKC1	89	79.348	Gorilla_gorilla
ENSIPUG00000010309	dkc1	100	82.785	ENSHBUG00000012436	dkc1	89	85.746	Haplochromis_burtoni
ENSIPUG00000010309	dkc1	85	79.510	ENSHGLG00000000649	DKC1	86	80.000	Heterocephalus_glaber_female
ENSIPUG00000010309	dkc1	82	81.776	ENSHGLG00100001153	DKC1	87	80.000	Heterocephalus_glaber_male
ENSIPUG00000010309	dkc1	90	81.370	ENSHCOG00000021099	dkc1	85	85.484	Hippocampus_comes
ENSIPUG00000010309	dkc1	85	68.386	ENSSTOG00000011904	-	81	69.091	Ictidomys_tridecemlineatus
ENSIPUG00000010309	dkc1	97	67.936	ENSSTOG00000020149	-	96	67.535	Ictidomys_tridecemlineatus
ENSIPUG00000010309	dkc1	84	81.406	ENSSTOG00000001074	-	90	81.406	Ictidomys_tridecemlineatus
ENSIPUG00000010309	dkc1	54	72.924	ENSJJAG00000010086	-	92	72.924	Jaculus_jaculus
ENSIPUG00000010309	dkc1	84	86.009	ENSKMAG00000008010	dkc1	86	85.845	Kryptolebias_marmoratus
ENSIPUG00000010309	dkc1	84	87.356	ENSLBEG00000019122	dkc1	92	85.996	Labrus_bergylta
ENSIPUG00000010309	dkc1	96	78.629	ENSLACG00000014025	DKC1	91	87.688	Latimeria_chalumnae
ENSIPUG00000010309	dkc1	89	84.731	ENSLOCG00000013713	dkc1	88	87.150	Lepisosteus_oculatus
ENSIPUG00000010309	dkc1	85	80.856	ENSLAFG00000000221	DKC1	86	80.856	Loxodonta_africana
ENSIPUG00000010309	dkc1	88	79.348	ENSMFAG00000032398	DKC1	77	79.348	Macaca_fascicularis
ENSIPUG00000010309	dkc1	88	79.348	ENSMMUG00000005768	DKC1	89	79.348	Macaca_mulatta
ENSIPUG00000010309	dkc1	88	79.348	ENSMNEG00000034503	DKC1	89	79.348	Macaca_nemestrina
ENSIPUG00000010309	dkc1	88	79.348	ENSMLEG00000034422	DKC1	89	79.348	Mandrillus_leucophaeus
ENSIPUG00000010309	dkc1	78	92.556	ENSMAMG00000005427	dkc1	89	93.955	Mastacembelus_armatus
ENSIPUG00000010309	dkc1	100	82.979	ENSMZEG00005014503	dkc1	89	85.965	Maylandia_zebra
ENSIPUG00000010309	dkc1	76	85.570	ENSMGAG00000009238	DKC1	87	84.119	Meleagris_gallopavo
ENSIPUG00000010309	dkc1	57	69.333	ENSMAUG00000016454	-	92	71.685	Mesocricetus_auratus
ENSIPUG00000010309	dkc1	77	74.010	ENSMICG00000002818	-	99	75.890	Microcebus_murinus
ENSIPUG00000010309	dkc1	88	78.384	ENSMICG00000038751	-	91	78.384	Microcebus_murinus
ENSIPUG00000010309	dkc1	57	66.667	ENSMOCG00000001169	-	92	69.176	Microtus_ochrogaster
ENSIPUG00000010309	dkc1	80	90.431	ENSMMOG00000020348	dkc1	91	90.431	Mola_mola
ENSIPUG00000010309	dkc1	77	85.464	ENSMODG00000009243	DKC1	69	85.464	Monodelphis_domestica
ENSIPUG00000010309	dkc1	100	79.304	ENSMALG00000009454	dkc1	88	84.649	Monopterus_albus
ENSIPUG00000010309	dkc1	88	69.296	MGP_CAROLIEiJ_G0033191	Dkc1	85	84.000	Mus_caroli
ENSIPUG00000010309	dkc1	88	78.925	ENSMUSG00000031403	Dkc1	98	74.850	Mus_musculus
ENSIPUG00000010309	dkc1	88	79.221	MGP_PahariEiJ_G0031735	Dkc1	100	69.333	Mus_pahari
ENSIPUG00000010309	dkc1	88	78.925	MGP_SPRETEiJ_G0034351	Dkc1	98	74.701	Mus_spretus
ENSIPUG00000010309	dkc1	84	78.619	ENSMPUG00000016136	DKC1	83	78.619	Mustela_putorius_furo
ENSIPUG00000010309	dkc1	85	75.785	ENSMLUG00000011918	DKC1	85	75.839	Myotis_lucifugus
ENSIPUG00000010309	dkc1	57	69.565	ENSNGAG00000015724	-	100	69.565	Nannospalax_galili
ENSIPUG00000010309	dkc1	77	92.443	ENSNBRG00000005638	dkc1	79	93.384	Neolamprologus_brichardi
ENSIPUG00000010309	dkc1	88	78.017	ENSNLEG00000014323	DKC1	90	78.186	Nomascus_leucogenys
ENSIPUG00000010309	dkc1	81	78.947	ENSMEUG00000001066	DKC1	93	77.541	Notamacropus_eugenii
ENSIPUG00000010309	dkc1	68	79.143	ENSOPRG00000005248	DKC1	69	80.290	Ochotona_princeps
ENSIPUG00000010309	dkc1	79	85.610	ENSODEG00000011816	-	86	81.777	Octodon_degus
ENSIPUG00000010309	dkc1	57	69.000	ENSODEG00000000549	-	92	71.685	Octodon_degus
ENSIPUG00000010309	dkc1	93	84.440	ENSONIG00000013889	dkc1	86	87.215	Oreochromis_niloticus
ENSIPUG00000010309	dkc1	83	83.256	ENSOANG00000008713	-	88	83.759	Ornithorhynchus_anatinus
ENSIPUG00000010309	dkc1	56	61.889	ENSOANG00000022295	-	84	62.706	Ornithorhynchus_anatinus
ENSIPUG00000010309	dkc1	88	78.649	ENSOCUG00000012646	DKC1	90	79.393	Oryctolagus_cuniculus
ENSIPUG00000010309	dkc1	91	81.953	ENSORLG00000018748	dkc1	84	86.009	Oryzias_latipes
ENSIPUG00000010309	dkc1	88	84.396	ENSOMEG00000005786	dkc1	83	89.212	Oryzias_melastigma
ENSIPUG00000010309	dkc1	88	77.612	ENSOGAG00000003399	DKC1	86	79.688	Otolemur_garnettii
ENSIPUG00000010309	dkc1	85	81.264	ENSOARG00000003047	DKC1	87	81.448	Ovis_aries
ENSIPUG00000010309	dkc1	88	77.802	ENSPPAG00000023820	DKC1	90	77.970	Pan_paniscus
ENSIPUG00000010309	dkc1	78	84.615	ENSPPRG00000009104	DKC1	86	80.645	Panthera_pardus
ENSIPUG00000010309	dkc1	79	83.863	ENSPTIG00000017469	DKC1	94	76.724	Panthera_tigris_altaica
ENSIPUG00000010309	dkc1	88	79.348	ENSPTRG00000022449	DKC1	89	79.348	Pan_troglodytes
ENSIPUG00000010309	dkc1	98	74.219	ENSPTRG00000043416	-	78	79.348	Pan_troglodytes
ENSIPUG00000010309	dkc1	88	79.348	ENSPANG00000011978	DKC1	89	79.348	Papio_anubis
ENSIPUG00000010309	dkc1	85	86.136	ENSPKIG00000008443	dkc1	90	87.617	Paramormyrops_kingsleyae
ENSIPUG00000010309	dkc1	69	89.106	ENSPSIG00000013765	DKC1	88	87.945	Pelodiscus_sinensis
ENSIPUG00000010309	dkc1	91	77.178	ENSPMGG00000004097	dkc1	82	80.313	Periophthalmus_magnuspinnatus
ENSIPUG00000010309	dkc1	74	79.703	ENSPEMG00000013348	Dkc1	89	79.703	Peromyscus_maniculatus_bairdii
ENSIPUG00000010309	dkc1	82	82.075	ENSPCIG00000016706	DKC1	73	80.600	Phascolarctos_cinereus
ENSIPUG00000010309	dkc1	85	85.973	ENSPFOG00000018653	dkc1	89	85.120	Poecilia_formosa
ENSIPUG00000010309	dkc1	85	85.973	ENSPLAG00000003272	dkc1	81	85.120	Poecilia_latipinna
ENSIPUG00000010309	dkc1	85	85.973	ENSPMEG00000010413	dkc1	89	85.590	Poecilia_mexicana
ENSIPUG00000010309	dkc1	85	85.973	ENSPREG00000004100	dkc1	85	85.194	Poecilia_reticulata
ENSIPUG00000010309	dkc1	84	81.549	ENSPPYG00000020892	DKC1	86	81.549	Pongo_abelii
ENSIPUG00000010309	dkc1	72	85.027	ENSPCAG00000015034	DKC1	73	85.027	Procavia_capensis
ENSIPUG00000010309	dkc1	88	79.130	ENSPCOG00000026874	DKC1	89	79.130	Propithecus_coquereli
ENSIPUG00000010309	dkc1	88	78.214	ENSPVAG00000009222	DKC1	86	80.365	Pteropus_vampyrus
ENSIPUG00000010309	dkc1	85	84.753	ENSPNYG00000020063	dkc1	87	86.667	Pundamilia_nyererei
ENSIPUG00000010309	dkc1	89	92.408	ENSPNAG00000005780	dkc1	87	91.904	Pygocentrus_nattereri
ENSIPUG00000010309	dkc1	97	71.457	ENSRNOG00000055562	Dkc1	91	75.647	Rattus_norvegicus
ENSIPUG00000010309	dkc1	88	79.348	ENSRBIG00000028457	DKC1	77	79.348	Rhinopithecus_bieti
ENSIPUG00000010309	dkc1	88	79.348	ENSRROG00000044780	DKC1	89	79.348	Rhinopithecus_roxellana
ENSIPUG00000010309	dkc1	74	72.063	YLR175W	-	79	72.063	Saccharomyces_cerevisiae
ENSIPUG00000010309	dkc1	88	77.802	ENSSBOG00000033746	DKC1	90	77.970	Saimiri_boliviensis_boliviensis
ENSIPUG00000010309	dkc1	84	81.293	ENSSHAG00000002463	DKC1	92	80.734	Sarcophilus_harrisii
ENSIPUG00000010309	dkc1	88	87.013	ENSSFOG00015009585	dkc1	90	86.985	Scleropages_formosus
ENSIPUG00000010309	dkc1	85	86.878	ENSSMAG00000002552	dkc1	85	86.818	Scophthalmus_maximus
ENSIPUG00000010309	dkc1	95	83.198	ENSSDUG00000009963	dkc1	89	85.526	Seriola_dumerili
ENSIPUG00000010309	dkc1	91	82.664	ENSSLDG00000019342	dkc1	92	84.389	Seriola_lalandi_dorsalis
ENSIPUG00000010309	dkc1	85	76.697	ENSSARG00000001822	DKC1	88	76.697	Sorex_araneus
ENSIPUG00000010309	dkc1	95	75.197	ENSSPUG00000018907	DKC1	90	78.178	Sphenodon_punctatus
ENSIPUG00000010309	dkc1	96	81.212	ENSSPAG00000002585	dkc1	84	85.398	Stegastes_partitus
ENSIPUG00000010309	dkc1	81	82.660	ENSSSCG00000012823	DKC1	86	83.902	Sus_scrofa
ENSIPUG00000010309	dkc1	77	84.673	ENSTGUG00000006781	DKC1	89	84.788	Taeniopygia_guttata
ENSIPUG00000010309	dkc1	85	85.649	ENSTRUG00000004413	dkc1	90	84.683	Takifugu_rubripes
ENSIPUG00000010309	dkc1	85	69.283	ENSTNIG00000002582	dkc1	87	69.526	Tetraodon_nigroviridis
ENSIPUG00000010309	dkc1	54	83.986	ENSTBEG00000011262	DKC1	85	79.743	Tupaia_belangeri
ENSIPUG00000010309	dkc1	54	87.004	ENSTTRG00000008089	DKC1	55	87.004	Tursiops_truncatus
ENSIPUG00000010309	dkc1	89	77.378	ENSUAMG00000022721	DKC1	86	84.390	Ursus_americanus
ENSIPUG00000010309	dkc1	90	76.774	ENSUMAG00000016899	DKC1	98	82.426	Ursus_maritimus
ENSIPUG00000010309	dkc1	81	81.840	ENSVVUG00000020734	-	73	81.840	Vulpes_vulpes
ENSIPUG00000010309	dkc1	91	63.907	ENSVVUG00000021671	-	81	66.207	Vulpes_vulpes
ENSIPUG00000010309	dkc1	88	82.418	ENSXETG00000032517	DKC1	96	78.958	Xenopus_tropicalis
ENSIPUG00000010309	dkc1	86	83.820	ENSXCOG00000005498	dkc1	92	84.738	Xiphophorus_couchianus
ENSIPUG00000010309	dkc1	89	83.333	ENSXMAG00000004919	dkc1	90	84.464	Xiphophorus_maculatus