EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000010367 (Gene tree)
Gene ID: 108274156
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 17049 bases
Position: chr13:21197506-21214554
Accession: 108274156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000015260	DND1_DSRM	PF14709.7	2e-26	1	1
ENSIPUP00000015260	RRM_1	PF00076.22	2.7e-40	1	3
ENSIPUP00000015260	RRM_1	PF00076.22	2.7e-40	2	3
ENSIPUP00000015260	RRM_1	PF00076.22	2.7e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000015902	-	6308	XM_017484100	ENSIPUP00000015260	559 (aa)	XP_017339589	A0A2D0SAW1

Gene Model

Click here to download ENSIPUG00000010367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000010367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000010367	a1cf	54	50.974	ENSIPUG00000015632	syncrip	55	50.325
ENSIPUG00000010367	a1cf	97	52.381	ENSIPUG00000004743	rbm47	80	51.412
ENSIPUG00000010367	a1cf	53	52.349	ENSIPUG00000005704	syncripl	59	48.615
ENSIPUG00000010367	a1cf	75	67.230	ENSIPUG00000024038	rbm46	89	66.019
ENSIPUG00000010367	a1cf	52	53.584	ENSIPUG00000008272	hnrnpr	67	43.498

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000010367	a1cf	96	83.209	ENSG00000148584	A1CF	100	87.562	Homo_sapiens
ENSIPUG00000010367	a1cf	95	82.123	ENSAPOG00000008259	a1cf	91	82.194	Acanthochromis_polyacanthus
ENSIPUG00000010367	a1cf	95	83.083	ENSAMEG00000000523	A1CF	90	82.649	Ailuropoda_melanoleuca
ENSIPUG00000010367	a1cf	99	81.514	ENSACIG00000008632	a1cf	89	83.607	Amphilophus_citrinellus
ENSIPUG00000010367	a1cf	95	83.210	ENSAOCG00000023744	a1cf	98	85.593	Amphiprion_ocellaris
ENSIPUG00000010367	a1cf	95	84.133	ENSAPEG00000009537	a1cf	91	85.609	Amphiprion_percula
ENSIPUG00000010367	a1cf	100	82.456	ENSATEG00000013720	a1cf	90	84.364	Anabas_testudineus
ENSIPUG00000010367	a1cf	97	83.978	ENSAPLG00000002964	A1CF	90	84.515	Anas_platyrhynchos
ENSIPUG00000010367	a1cf	97	79.374	ENSACAG00000015269	A1CF	90	79.888	Anolis_carolinensis
ENSIPUG00000010367	a1cf	96	81.716	ENSANAG00000019974	A1CF	89	81.716	Aotus_nancymaae
ENSIPUG00000010367	a1cf	96	82.815	ENSACLG00000017428	a1cf	92	83.607	Astatotilapia_calliptera
ENSIPUG00000010367	a1cf	95	88.368	ENSAMXG00000018180	a1cf	88	87.546	Astyanax_mexicanus
ENSIPUG00000010367	a1cf	95	81.989	ENSBTAG00000021195	A1CF	97	81.716	Bos_taurus
ENSIPUG00000010367	a1cf	96	83.209	ENSCJAG00000005045	A1CF	89	83.209	Callithrix_jacchus
ENSIPUG00000010367	a1cf	99	81.013	ENSCAFG00000015581	A1CF	90	82.463	Canis_familiaris
ENSIPUG00000010367	a1cf	99	81.013	ENSCAFG00020026421	A1CF	98	83.221	Canis_lupus_dingo
ENSIPUG00000010367	a1cf	95	82.552	ENSCHIG00000020411	A1CF	89	82.276	Capra_hircus
ENSIPUG00000010367	a1cf	91	82.549	ENSTSYG00000001755	A1CF	89	81.980	Carlito_syrichta
ENSIPUG00000010367	a1cf	95	75.309	ENSCAPG00000017386	A1CF	86	75.000	Cavia_aperea
ENSIPUG00000010367	a1cf	96	82.836	ENSCPOG00000009807	A1CF	89	82.836	Cavia_porcellus
ENSIPUG00000010367	a1cf	99	81.541	ENSCCAG00000018168	A1CF	89	83.209	Cebus_capucinus
ENSIPUG00000010367	a1cf	96	81.970	ENSCATG00000043715	A1CF	94	81.970	Cercocebus_atys
ENSIPUG00000010367	a1cf	96	82.649	ENSCLAG00000010424	A1CF	89	82.649	Chinchilla_lanigera
ENSIPUG00000010367	a1cf	96	83.209	ENSCSAG00000007032	A1CF	90	83.209	Chlorocebus_sabaeus
ENSIPUG00000010367	a1cf	94	78.719	ENSCHOG00000009089	A1CF	87	78.719	Choloepus_hoffmanni
ENSIPUG00000010367	a1cf	99	80.431	ENSCPBG00000026464	A1CF	90	82.309	Chrysemys_picta_bellii
ENSIPUG00000010367	a1cf	96	83.022	ENSCANG00000038032	A1CF	90	83.022	Colobus_angolensis_palliatus
ENSIPUG00000010367	a1cf	95	82.927	ENSCGRG00001017413	A1cf	89	82.682	Cricetulus_griseus_chok1gshd
ENSIPUG00000010367	a1cf	95	82.927	ENSCGRG00000017332	A1cf	89	82.682	Cricetulus_griseus_crigri
ENSIPUG00000010367	a1cf	95	83.738	ENSCSEG00000002361	a1cf	88	84.112	Cynoglossus_semilaevis
ENSIPUG00000010367	a1cf	95	82.353	ENSCVAG00000010520	a1cf	89	83.456	Cyprinodon_variegatus
ENSIPUG00000010367	a1cf	95	90.432	ENSDARG00000002968	a1cf	90	89.963	Danio_rerio
ENSIPUG00000010367	a1cf	95	83.019	ENSDNOG00000002829	A1CF	90	81.970	Dasypus_novemcinctus
ENSIPUG00000010367	a1cf	75	85.507	ENSETEG00000012527	A1CF	71	85.507	Echinops_telfairi
ENSIPUG00000010367	a1cf	95	83.302	ENSEASG00005012924	A1CF	89	83.022	Equus_asinus_asinus
ENSIPUG00000010367	a1cf	95	82.927	ENSECAG00000010424	A1CF	89	82.649	Equus_caballus
ENSIPUG00000010367	a1cf	84	69.574	ENSEEUG00000000013	A1CF	97	70.524	Erinaceus_europaeus
ENSIPUG00000010367	a1cf	96	88.848	ENSELUG00000003159	a1cf	91	88.848	Esox_lucius
ENSIPUG00000010367	a1cf	95	81.614	ENSFCAG00000011179	A1CF	89	81.157	Felis_catus
ENSIPUG00000010367	a1cf	97	82.320	ENSFALG00000013183	A1CF	90	82.682	Ficedula_albicollis
ENSIPUG00000010367	a1cf	96	81.378	ENSFDAG00000019371	A1CF	89	81.378	Fukomys_damarensis
ENSIPUG00000010367	a1cf	95	75.551	ENSFHEG00000019652	a1cf	96	87.500	Fundulus_heteroclitus
ENSIPUG00000010367	a1cf	99	77.620	ENSGMOG00000018943	a1cf	89	79.777	Gadus_morhua
ENSIPUG00000010367	a1cf	91	83.170	ENSGALG00000003765	A1CF	86	83.564	Gallus_gallus
ENSIPUG00000010367	a1cf	99	74.867	ENSGAFG00000014868	a1cf	88	76.296	Gambusia_affinis
ENSIPUG00000010367	a1cf	99	80.284	ENSGACG00000010241	a1cf	88	82.900	Gasterosteus_aculeatus
ENSIPUG00000010367	a1cf	94	80.114	ENSGAGG00000016508	A1CF	87	82.087	Gopherus_agassizii
ENSIPUG00000010367	a1cf	96	83.209	ENSGGOG00000009670	A1CF	89	83.209	Gorilla_gorilla
ENSIPUG00000010367	a1cf	96	82.878	ENSHBUG00000021959	a1cf	89	83.789	Haplochromis_burtoni
ENSIPUG00000010367	a1cf	95	83.208	ENSHGLG00000008955	A1CF	89	82.463	Heterocephalus_glaber_female
ENSIPUG00000010367	a1cf	95	82.453	ENSHGLG00100000518	A1CF	89	81.716	Heterocephalus_glaber_male
ENSIPUG00000010367	a1cf	99	75.000	ENSHCOG00000017669	a1cf	90	77.536	Hippocampus_comes
ENSIPUG00000010367	a1cf	95	84.686	ENSKMAG00000006568	a1cf	88	85.793	Kryptolebias_marmoratus
ENSIPUG00000010367	a1cf	95	84.854	ENSLBEG00000020994	a1cf	89	85.246	Labrus_bergylta
ENSIPUG00000010367	a1cf	99	83.784	ENSLACG00000008061	A1CF	90	85.261	Latimeria_chalumnae
ENSIPUG00000010367	a1cf	95	88.368	ENSLOCG00000006302	a1cf	91	87.732	Lepisosteus_oculatus
ENSIPUG00000010367	a1cf	97	82.440	ENSLAFG00000015462	A1CF	89	83.799	Loxodonta_africana
ENSIPUG00000010367	a1cf	96	82.342	ENSMFAG00000035948	A1CF	94	82.342	Macaca_fascicularis
ENSIPUG00000010367	a1cf	96	81.903	ENSMMUG00000007077	A1CF	89	81.903	Macaca_mulatta
ENSIPUG00000010367	a1cf	96	82.836	ENSMNEG00000031454	A1CF	94	82.836	Macaca_nemestrina
ENSIPUG00000010367	a1cf	96	82.836	ENSMLEG00000037223	A1CF	94	81.970	Mandrillus_leucophaeus
ENSIPUG00000010367	a1cf	95	82.593	ENSMAMG00000010402	a1cf	88	83.549	Mastacembelus_armatus
ENSIPUG00000010367	a1cf	99	83.036	ENSMZEG00005013245	a1cf	90	85.158	Maylandia_zebra
ENSIPUG00000010367	a1cf	97	82.537	ENSMGAG00000001507	A1CF	90	82.900	Meleagris_gallopavo
ENSIPUG00000010367	a1cf	95	82.364	ENSMAUG00000007422	A1cf	89	82.123	Mesocricetus_auratus
ENSIPUG00000010367	a1cf	95	80.488	ENSMICG00000003377	A1CF	88	81.157	Microcebus_murinus
ENSIPUG00000010367	a1cf	96	83.022	ENSMOCG00000021536	A1cf	89	82.714	Microtus_ochrogaster
ENSIPUG00000010367	a1cf	89	79.175	ENSMMOG00000009422	a1cf	86	80.157	Mola_mola
ENSIPUG00000010367	a1cf	96	80.410	ENSMODG00000016478	A1CF	97	81.343	Monodelphis_domestica
ENSIPUG00000010367	a1cf	97	78.611	ENSMALG00000012992	a1cf	92	78.928	Monopterus_albus
ENSIPUG00000010367	a1cf	96	82.090	MGP_CAROLIEiJ_G0022873	A1cf	89	82.090	Mus_caroli
ENSIPUG00000010367	a1cf	96	82.090	ENSMUSG00000052595	A1cf	99	83.557	Mus_musculus
ENSIPUG00000010367	a1cf	99	79.391	MGP_PahariEiJ_G0014366	A1cf	89	81.343	Mus_pahari
ENSIPUG00000010367	a1cf	96	82.090	MGP_SPRETEiJ_G0023792	A1cf	89	82.090	Mus_spretus
ENSIPUG00000010367	a1cf	99	74.865	ENSMPUG00000016971	A1CF	92	74.910	Mustela_putorius_furo
ENSIPUG00000010367	a1cf	95	82.739	ENSMLUG00000016071	A1CF	89	82.739	Myotis_lucifugus
ENSIPUG00000010367	a1cf	96	83.209	ENSNGAG00000015136	A1cf	89	83.054	Nannospalax_galili
ENSIPUG00000010367	a1cf	96	82.878	ENSNBRG00000001712	a1cf	89	83.789	Neolamprologus_brichardi
ENSIPUG00000010367	a1cf	96	83.396	ENSNLEG00000012028	A1CF	89	83.396	Nomascus_leucogenys
ENSIPUG00000010367	a1cf	90	81.710	ENSMEUG00000015909	A1CF	89	81.710	Notamacropus_eugenii
ENSIPUG00000010367	a1cf	95	72.642	ENSOPRG00000010667	A1CF	97	72.253	Ochotona_princeps
ENSIPUG00000010367	a1cf	96	83.607	ENSONIG00000019105	a1cf	89	83.789	Oreochromis_niloticus
ENSIPUG00000010367	a1cf	84	80.297	ENSOANG00000007360	A1CF	99	80.297	Ornithorhynchus_anatinus
ENSIPUG00000010367	a1cf	95	82.830	ENSOCUG00000011587	A1CF	89	82.276	Oryctolagus_cuniculus
ENSIPUG00000010367	a1cf	99	81.028	ENSORLG00000013342	a1cf	92	82.299	Oryzias_latipes
ENSIPUG00000010367	a1cf	99	80.986	ENSORLG00020000586	a1cf	89	82.936	Oryzias_latipes_hni
ENSIPUG00000010367	a1cf	99	80.986	ENSORLG00015018569	a1cf	89	82.936	Oryzias_latipes_hsok
ENSIPUG00000010367	a1cf	99	80.742	ENSOMEG00000013531	a1cf	88	82.070	Oryzias_melastigma
ENSIPUG00000010367	a1cf	95	82.075	ENSOGAG00000012884	A1CF	90	82.463	Otolemur_garnettii
ENSIPUG00000010367	a1cf	95	82.739	ENSOARG00000013695	A1CF	89	82.463	Ovis_aries
ENSIPUG00000010367	a1cf	93	82.239	ENSPPAG00000028115	A1CF	99	84.569	Pan_paniscus
ENSIPUG00000010367	a1cf	95	82.927	ENSPPRG00000012180	A1CF	90	82.463	Panthera_pardus
ENSIPUG00000010367	a1cf	95	82.927	ENSPTIG00000021223	A1CF	90	82.463	Panthera_tigris_altaica
ENSIPUG00000010367	a1cf	96	83.022	ENSPTRG00000002508	A1CF	89	83.022	Pan_troglodytes
ENSIPUG00000010367	a1cf	96	82.342	ENSPANG00000021988	A1CF	94	82.342	Papio_anubis
ENSIPUG00000010367	a1cf	96	89.739	ENSPKIG00000025176	a1cf	90	89.591	Paramormyrops_kingsleyae
ENSIPUG00000010367	a1cf	99	79.174	ENSPSIG00000010318	A1CF	90	81.157	Pelodiscus_sinensis
ENSIPUG00000010367	a1cf	95	74.765	ENSPMGG00000013359	a1cf	89	75.330	Periophthalmus_magnuspinnatus
ENSIPUG00000010367	a1cf	99	81.004	ENSPEMG00000015021	A1cf	89	82.868	Peromyscus_maniculatus_bairdii
ENSIPUG00000010367	a1cf	96	80.597	ENSPCIG00000002175	A1CF	90	81.530	Phascolarctos_cinereus
ENSIPUG00000010367	a1cf	95	83.272	ENSPFOG00000006683	a1cf	89	84.375	Poecilia_formosa
ENSIPUG00000010367	a1cf	95	83.088	ENSPFOG00000007437	-	89	84.191	Poecilia_formosa
ENSIPUG00000010367	a1cf	95	82.169	ENSPLAG00000000026	a1cf	88	83.272	Poecilia_latipinna
ENSIPUG00000010367	a1cf	95	82.169	ENSPLAG00000001210	-	88	83.272	Poecilia_latipinna
ENSIPUG00000010367	a1cf	95	73.432	ENSPMEG00000000921	a1cf	87	74.539	Poecilia_mexicana
ENSIPUG00000010367	a1cf	95	74.539	ENSPMEG00000015529	-	88	75.646	Poecilia_mexicana
ENSIPUG00000010367	a1cf	99	81.547	ENSPREG00000016298	a1cf	89	83.971	Poecilia_reticulata
ENSIPUG00000010367	a1cf	96	82.276	ENSPPYG00000002819	A1CF	89	82.276	Pongo_abelii
ENSIPUG00000010367	a1cf	67	71.088	ENSPCAG00000006463	A1CF	62	71.088	Procavia_capensis
ENSIPUG00000010367	a1cf	95	81.989	ENSPCOG00000024172	A1CF	89	82.649	Propithecus_coquereli
ENSIPUG00000010367	a1cf	96	84.335	ENSPNYG00000017944	a1cf	90	85.246	Pundamilia_nyererei
ENSIPUG00000010367	a1cf	96	94.403	ENSPNAG00000007704	a1cf	89	94.238	Pygocentrus_nattereri
ENSIPUG00000010367	a1cf	96	80.597	ENSRNOG00000033195	A1cf	89	80.597	Rattus_norvegicus
ENSIPUG00000010367	a1cf	96	76.952	ENSRBIG00000042892	A1CF	88	80.752	Rhinopithecus_bieti
ENSIPUG00000010367	a1cf	96	83.209	ENSRROG00000041398	A1CF	90	83.209	Rhinopithecus_roxellana
ENSIPUG00000010367	a1cf	96	83.396	ENSSBOG00000021930	A1CF	89	83.396	Saimiri_boliviensis_boliviensis
ENSIPUG00000010367	a1cf	96	82.276	ENSSHAG00000005096	A1CF	90	82.276	Sarcophilus_harrisii
ENSIPUG00000010367	a1cf	95	90.226	ENSSFOG00015011774	a1cf	93	90.619	Scleropages_formosus
ENSIPUG00000010367	a1cf	95	83.272	ENSSMAG00000013271	a1cf	89	83.456	Scophthalmus_maximus
ENSIPUG00000010367	a1cf	100	83.837	ENSSDUG00000013930	a1cf	89	85.343	Seriola_dumerili
ENSIPUG00000010367	a1cf	95	77.778	ENSSLDG00000004290	a1cf	88	77.407	Seriola_lalandi_dorsalis
ENSIPUG00000010367	a1cf	90	72.962	ENSSARG00000005940	A1CF	85	72.441	Sorex_araneus
ENSIPUG00000010367	a1cf	92	81.871	ENSSPUG00000006797	A1CF	85	82.122	Sphenodon_punctatus
ENSIPUG00000010367	a1cf	95	83.677	ENSSSCG00000010431	A1CF	89	83.271	Sus_scrofa
ENSIPUG00000010367	a1cf	99	82.079	ENSTGUG00000005090	A1CF	89	83.985	Taeniopygia_guttata
ENSIPUG00000010367	a1cf	99	80.668	ENSTRUG00000001982	a1cf	89	82.537	Takifugu_rubripes
ENSIPUG00000010367	a1cf	99	80.560	ENSTNIG00000003580	a1cf	89	82.234	Tetraodon_nigroviridis
ENSIPUG00000010367	a1cf	92	75.534	ENSTTRG00000013190	A1CF	84	75.290	Tursiops_truncatus
ENSIPUG00000010367	a1cf	99	79.892	ENSUAMG00000020065	A1CF	92	79.570	Ursus_americanus
ENSIPUG00000010367	a1cf	95	82.739	ENSUMAG00000011162	A1CF	90	82.463	Ursus_maritimus
ENSIPUG00000010367	a1cf	82	80.744	ENSVPAG00000006130	A1CF	74	80.744	Vicugna_pacos
ENSIPUG00000010367	a1cf	99	79.928	ENSVVUG00000002504	A1CF	97	81.343	Vulpes_vulpes
ENSIPUG00000010367	a1cf	99	75.135	ENSXETG00000006611	a1cf	91	76.493	Xenopus_tropicalis
ENSIPUG00000010367	a1cf	95	83.704	ENSXCOG00000003302	a1cf	88	83.704	Xiphophorus_couchianus
ENSIPUG00000010367	a1cf	95	84.815	ENSXMAG00000016703	a1cf	89	84.815	Xiphophorus_maculatus