EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000010539 (Gene tree)
Gene ID: 100528971
Gene Symbol: lsm2
Alias: -
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 21403 bases
Position: chr11:10744098-10765500
Accession: 100528971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000015483	LSM	PF01423.22	8.1e-17	1	1
ENSIPUP00000015501	LSM	PF01423.22	8.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000016143	-	1766	-	ENSIPUP00000015483	95 (aa)	-	E3TF96
ENSIPUT00000016162	-	288	-	ENSIPUP00000015501	95 (aa)	-	E3TF96

Gene Model

Click here to download ENSIPUG00000010539's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000010539's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000010539	lsm2	100	32.000	ENSIPUG00000005368	Lsm4	68	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000010539	lsm2	100	98.947	ENSG00000204392	LSM2	100	98.947	Homo_sapiens
ENSIPUG00000010539	lsm2	100	100.000	ENSAPOG00000017967	si:ch73-14h10.2	100	100.000	Acanthochromis_polyacanthus
ENSIPUG00000010539	lsm2	99	98.936	ENSAMEG00000006483	LSM2	100	98.936	Ailuropoda_melanoleuca
ENSIPUG00000010539	lsm2	99	100.000	ENSACIG00000007795	si:ch73-14h10.2	62	100.000	Amphilophus_citrinellus
ENSIPUG00000010539	lsm2	99	100.000	ENSAOCG00000006949	si:ch73-14h10.2	78	100.000	Amphiprion_ocellaris
ENSIPUG00000010539	lsm2	99	100.000	ENSAPEG00000020375	si:ch73-14h10.2	87	100.000	Amphiprion_percula
ENSIPUG00000010539	lsm2	100	100.000	ENSATEG00000011376	si:ch73-14h10.2	100	100.000	Anabas_testudineus
ENSIPUG00000010539	lsm2	99	98.936	ENSACAG00000017281	LSM2	90	98.936	Anolis_carolinensis
ENSIPUG00000010539	lsm2	100	98.947	ENSANAG00000028372	LSM2	100	98.947	Aotus_nancymaae
ENSIPUG00000010539	lsm2	96	80.220	ENSANAG00000028033	-	96	80.220	Aotus_nancymaae
ENSIPUG00000010539	lsm2	100	100.000	ENSACLG00000024717	smx5	100	100.000	Astatotilapia_calliptera
ENSIPUG00000010539	lsm2	100	100.000	ENSAMXG00000036868	si:ch73-14h10.2	100	100.000	Astyanax_mexicanus
ENSIPUG00000010539	lsm2	100	98.947	ENSBTAG00000005634	LSM2	100	98.947	Bos_taurus
ENSIPUG00000010539	lsm2	99	82.979	WBGene00001808	gut-2	97	82.979	Caenorhabditis_elegans
ENSIPUG00000010539	lsm2	100	98.947	ENSCJAG00000040899	LSM2	100	98.947	Callithrix_jacchus
ENSIPUG00000010539	lsm2	75	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSIPUG00000010539	lsm2	99	98.936	ENSCHIG00000016153	LSM2	100	98.936	Capra_hircus
ENSIPUG00000010539	lsm2	100	98.947	ENSTSYG00000034844	LSM2	100	98.947	Carlito_syrichta
ENSIPUG00000010539	lsm2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
ENSIPUG00000010539	lsm2	76	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSIPUG00000010539	lsm2	100	98.947	ENSCPOG00000021053	LSM2	100	98.947	Cavia_porcellus
ENSIPUG00000010539	lsm2	100	98.947	ENSCCAG00000024276	LSM2	100	98.947	Cebus_capucinus
ENSIPUG00000010539	lsm2	100	98.947	ENSCATG00000013737	LSM2	100	98.947	Cercocebus_atys
ENSIPUG00000010539	lsm2	100	98.947	ENSCLAG00000008081	LSM2	100	98.947	Chinchilla_lanigera
ENSIPUG00000010539	lsm2	100	98.947	ENSCSAG00000008800	LSM2	100	98.947	Chlorocebus_sabaeus
ENSIPUG00000010539	lsm2	100	98.947	ENSCHOG00000007702	LSM2	100	98.947	Choloepus_hoffmanni
ENSIPUG00000010539	lsm2	100	95.789	ENSCING00000022677	-	100	95.789	Ciona_intestinalis
ENSIPUG00000010539	lsm2	100	98.947	ENSCANG00000039576	LSM2	100	98.947	Colobus_angolensis_palliatus
ENSIPUG00000010539	lsm2	100	98.947	ENSCGRG00001013932	Lsm2	100	98.947	Cricetulus_griseus_chok1gshd
ENSIPUG00000010539	lsm2	76	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSIPUG00000010539	lsm2	100	100.000	ENSCSEG00000002911	si:ch73-14h10.2	100	100.000	Cynoglossus_semilaevis
ENSIPUG00000010539	lsm2	99	100.000	ENSCVAG00000015394	si:ch73-14h10.2	89	100.000	Cyprinodon_variegatus
ENSIPUG00000010539	lsm2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
ENSIPUG00000010539	lsm2	99	98.936	ENSDNOG00000002633	LSM2	100	98.936	Dasypus_novemcinctus
ENSIPUG00000010539	lsm2	100	98.947	ENSDORG00000026571	Lsm2	100	98.947	Dipodomys_ordii
ENSIPUG00000010539	lsm2	96	95.604	FBgn0036277	CG10418	96	95.604	Drosophila_melanogaster
ENSIPUG00000010539	lsm2	99	98.936	ENSEASG00005015670	LSM2	79	98.936	Equus_asinus_asinus
ENSIPUG00000010539	lsm2	99	98.936	ENSECAG00000018791	LSM2	79	98.936	Equus_caballus
ENSIPUG00000010539	lsm2	100	98.947	ENSELUG00000008241	smx5	100	98.947	Esox_lucius
ENSIPUG00000010539	lsm2	100	98.947	ENSFCAG00000045887	LSM2	100	98.947	Felis_catus
ENSIPUG00000010539	lsm2	100	98.947	ENSFDAG00000000390	LSM2	100	98.947	Fukomys_damarensis
ENSIPUG00000010539	lsm2	99	96.875	ENSFHEG00000009619	si:ch73-14h10.2	100	96.875	Fundulus_heteroclitus
ENSIPUG00000010539	lsm2	99	100.000	ENSGMOG00000019208	si:ch73-14h10.2	100	100.000	Gadus_morhua
ENSIPUG00000010539	lsm2	100	100.000	ENSGAFG00000017286	si:ch73-14h10.2	100	100.000	Gambusia_affinis
ENSIPUG00000010539	lsm2	100	100.000	ENSGACG00000003827	si:ch73-14h10.2	100	100.000	Gasterosteus_aculeatus
ENSIPUG00000010539	lsm2	100	98.947	ENSGAGG00000012458	LSM2	100	98.947	Gopherus_agassizii
ENSIPUG00000010539	lsm2	100	98.947	ENSGGOG00000011383	LSM2	100	98.947	Gorilla_gorilla
ENSIPUG00000010539	lsm2	100	98.947	ENSHGLG00000011299	LSM2	100	98.947	Heterocephalus_glaber_female
ENSIPUG00000010539	lsm2	100	98.947	ENSHGLG00100017194	LSM2	100	98.947	Heterocephalus_glaber_male
ENSIPUG00000010539	lsm2	100	100.000	ENSHCOG00000014057	si:ch73-14h10.2	100	100.000	Hippocampus_comes
ENSIPUG00000010539	lsm2	100	98.947	ENSSTOG00000013144	LSM2	100	98.947	Ictidomys_tridecemlineatus
ENSIPUG00000010539	lsm2	94	76.404	ENSJJAG00000019477	-	100	76.404	Jaculus_jaculus
ENSIPUG00000010539	lsm2	100	100.000	ENSKMAG00000014909	si:ch73-14h10.2	100	100.000	Kryptolebias_marmoratus
ENSIPUG00000010539	lsm2	99	98.936	ENSLBEG00000025781	si:ch73-14h10.2	98	98.936	Labrus_bergylta
ENSIPUG00000010539	lsm2	100	100.000	ENSLACG00000015064	LSM2	100	100.000	Latimeria_chalumnae
ENSIPUG00000010539	lsm2	100	100.000	ENSLOCG00000005228	si:ch73-14h10.2	100	100.000	Lepisosteus_oculatus
ENSIPUG00000010539	lsm2	99	98.936	ENSLAFG00000016139	LSM2	100	98.936	Loxodonta_africana
ENSIPUG00000010539	lsm2	100	98.947	ENSMFAG00000001016	LSM2	100	98.947	Macaca_fascicularis
ENSIPUG00000010539	lsm2	99	80.851	ENSMMUG00000045473	-	97	80.851	Macaca_mulatta
ENSIPUG00000010539	lsm2	100	98.947	ENSMMUG00000006832	LSM2	100	98.947	Macaca_mulatta
ENSIPUG00000010539	lsm2	79	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSIPUG00000010539	lsm2	100	98.947	ENSMNEG00000045355	LSM2	100	98.947	Macaca_nemestrina
ENSIPUG00000010539	lsm2	100	98.947	ENSMLEG00000037369	-	100	98.947	Mandrillus_leucophaeus
ENSIPUG00000010539	lsm2	99	79.787	ENSMLEG00000031181	-	97	79.787	Mandrillus_leucophaeus
ENSIPUG00000010539	lsm2	100	100.000	ENSMAMG00000010053	si:ch73-14h10.2	73	100.000	Mastacembelus_armatus
ENSIPUG00000010539	lsm2	99	97.917	ENSMZEG00005008688	si:ch73-14h10.2	100	97.917	Maylandia_zebra
ENSIPUG00000010539	lsm2	100	98.947	ENSMAUG00000021966	Lsm2	100	98.947	Mesocricetus_auratus
ENSIPUG00000010539	lsm2	76	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSIPUG00000010539	lsm2	100	98.947	ENSMOCG00000015306	Lsm2	100	98.947	Microtus_ochrogaster
ENSIPUG00000010539	lsm2	99	98.936	ENSMMOG00000005603	si:ch73-14h10.2	100	98.936	Mola_mola
ENSIPUG00000010539	lsm2	99	100.000	ENSMODG00000015177	LSM2	99	100.000	Monodelphis_domestica
ENSIPUG00000010539	lsm2	100	100.000	ENSMALG00000016490	si:ch73-14h10.2	100	100.000	Monopterus_albus
ENSIPUG00000010539	lsm2	100	98.947	MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	Mus_caroli
ENSIPUG00000010539	lsm2	100	98.947	ENSMUSG00000007050	Lsm2	100	98.947	Mus_musculus
ENSIPUG00000010539	lsm2	100	98.947	MGP_PahariEiJ_G0020485	Lsm2	100	98.947	Mus_pahari
ENSIPUG00000010539	lsm2	100	98.947	MGP_SPRETEiJ_G0022395	Lsm2	100	98.947	Mus_spretus
ENSIPUG00000010539	lsm2	100	98.947	ENSNGAG00000003997	Lsm2	100	98.947	Nannospalax_galili
ENSIPUG00000010539	lsm2	99	97.917	ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	Neolamprologus_brichardi
ENSIPUG00000010539	lsm2	100	98.947	ENSNLEG00000035542	LSM2	100	98.947	Nomascus_leucogenys
ENSIPUG00000010539	lsm2	75	100.000	ENSMEUG00000003419	LSM2	100	100.000	Notamacropus_eugenii
ENSIPUG00000010539	lsm2	100	98.947	ENSOPRG00000003668	LSM2	100	98.947	Ochotona_princeps
ENSIPUG00000010539	lsm2	100	98.947	ENSODEG00000017583	LSM2	100	98.947	Octodon_degus
ENSIPUG00000010539	lsm2	100	100.000	ENSONIG00000019321	si:ch73-14h10.2	100	100.000	Oreochromis_niloticus
ENSIPUG00000010539	lsm2	99	98.936	ENSOANG00000005398	LSM2	100	98.936	Ornithorhynchus_anatinus
ENSIPUG00000010539	lsm2	100	98.947	ENSOCUG00000002583	LSM2	100	98.947	Oryctolagus_cuniculus
ENSIPUG00000010539	lsm2	100	100.000	ENSORLG00000029858	si:ch73-14h10.2	100	100.000	Oryzias_latipes
ENSIPUG00000010539	lsm2	100	76.613	ENSORLG00015000465	si:ch73-14h10.2	100	76.613	Oryzias_latipes_hsok
ENSIPUG00000010539	lsm2	100	100.000	ENSOMEG00000002892	si:ch73-14h10.2	100	100.000	Oryzias_melastigma
ENSIPUG00000010539	lsm2	99	98.936	ENSOARG00000004575	LSM2	100	98.936	Ovis_aries
ENSIPUG00000010539	lsm2	79	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSIPUG00000010539	lsm2	100	98.947	ENSPPAG00000032431	LSM2	100	98.947	Pan_paniscus
ENSIPUG00000010539	lsm2	100	98.947	ENSPPRG00000015353	LSM2	100	98.947	Panthera_pardus
ENSIPUG00000010539	lsm2	99	98.936	ENSPTIG00000010303	LSM2	99	98.936	Panthera_tigris_altaica
ENSIPUG00000010539	lsm2	100	98.947	ENSPTRG00000017986	LSM2	100	98.947	Pan_troglodytes
ENSIPUG00000010539	lsm2	100	98.947	ENSPANG00000024577	LSM2	100	98.947	Papio_anubis
ENSIPUG00000010539	lsm2	100	100.000	ENSPKIG00000007028	si:ch73-14h10.2	100	100.000	Paramormyrops_kingsleyae
ENSIPUG00000010539	lsm2	99	98.936	ENSPSIG00000004458	LSM2	78	98.936	Pelodiscus_sinensis
ENSIPUG00000010539	lsm2	99	97.872	ENSPMGG00000018511	si:ch73-14h10.2	100	97.872	Periophthalmus_magnuspinnatus
ENSIPUG00000010539	lsm2	99	100.000	ENSPCIG00000018560	-	95	100.000	Phascolarctos_cinereus
ENSIPUG00000010539	lsm2	100	100.000	ENSPFOG00000001621	si:ch73-14h10.2	100	100.000	Poecilia_formosa
ENSIPUG00000010539	lsm2	100	100.000	ENSPLAG00000017165	si:ch73-14h10.2	100	100.000	Poecilia_latipinna
ENSIPUG00000010539	lsm2	100	100.000	ENSPMEG00000019574	si:ch73-14h10.2	100	100.000	Poecilia_mexicana
ENSIPUG00000010539	lsm2	99	98.936	ENSPREG00000016534	si:ch73-14h10.2	100	98.936	Poecilia_reticulata
ENSIPUG00000010539	lsm2	100	98.947	ENSPPYG00000016461	-	54	98.947	Pongo_abelii
ENSIPUG00000010539	lsm2	100	98.947	ENSPCAG00000013737	LSM2	100	98.947	Procavia_capensis
ENSIPUG00000010539	lsm2	100	98.947	ENSPCOG00000020134	LSM2	100	98.947	Propithecus_coquereli
ENSIPUG00000010539	lsm2	100	98.947	ENSPVAG00000012405	LSM2	100	98.947	Pteropus_vampyrus
ENSIPUG00000010539	lsm2	100	100.000	ENSPNYG00000019298	smx5	100	100.000	Pundamilia_nyererei
ENSIPUG00000010539	lsm2	100	100.000	ENSPNAG00000027769	si:ch73-14h10.2	100	100.000	Pygocentrus_nattereri
ENSIPUG00000010539	lsm2	100	98.947	ENSRNOG00000048725	Lsm2	100	98.947	Rattus_norvegicus
ENSIPUG00000010539	lsm2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSIPUG00000010539	lsm2	79	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSIPUG00000010539	lsm2	100	98.947	ENSRBIG00000010172	LSM2	100	98.947	Rhinopithecus_bieti
ENSIPUG00000010539	lsm2	100	98.947	ENSRROG00000030345	LSM2	100	98.947	Rhinopithecus_roxellana
ENSIPUG00000010539	lsm2	79	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSIPUG00000010539	lsm2	100	64.211	YBL026W	LSM2	100	64.211	Saccharomyces_cerevisiae
ENSIPUG00000010539	lsm2	100	98.947	ENSSBOG00000018943	LSM2	100	98.947	Saimiri_boliviensis_boliviensis
ENSIPUG00000010539	lsm2	100	100.000	ENSSFOG00015006734	lsm2	100	100.000	Scleropages_formosus
ENSIPUG00000010539	lsm2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	Scophthalmus_maximus
ENSIPUG00000010539	lsm2	100	100.000	ENSSDUG00000021605	smx5	100	100.000	Seriola_dumerili
ENSIPUG00000010539	lsm2	100	100.000	ENSSLDG00000002765	si:ch73-14h10.2	100	100.000	Seriola_lalandi_dorsalis
ENSIPUG00000010539	lsm2	100	100.000	ENSSPUG00000009631	LSM2	100	100.000	Sphenodon_punctatus
ENSIPUG00000010539	lsm2	100	100.000	ENSSPAG00000016904	si:ch73-14h10.2	100	100.000	Stegastes_partitus
ENSIPUG00000010539	lsm2	100	98.947	ENSSSCG00000039021	LSM2	100	98.947	Sus_scrofa
ENSIPUG00000010539	lsm2	99	98.936	ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	Takifugu_rubripes
ENSIPUG00000010539	lsm2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
ENSIPUG00000010539	lsm2	100	98.947	ENSTTRG00000014131	LSM2	100	98.947	Tursiops_truncatus
ENSIPUG00000010539	lsm2	99	98.936	ENSUMAG00000013425	LSM2	65	98.936	Ursus_maritimus
ENSIPUG00000010539	lsm2	99	98.936	ENSVPAG00000001761	LSM2	100	98.936	Vicugna_pacos
ENSIPUG00000010539	lsm2	79	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSIPUG00000010539	lsm2	100	98.947	ENSXETG00000024077	lsm2	100	98.947	Xenopus_tropicalis
ENSIPUG00000010539	lsm2	99	98.936	ENSXCOG00000006078	si:ch73-14h10.2	100	98.936	Xiphophorus_couchianus
ENSIPUG00000010539	lsm2	99	98.936	ENSXMAG00000028018	si:ch73-14h10.2	100	98.936	Xiphophorus_maculatus