EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000011060 (Gene tree)
Gene ID: 108255836
Gene Symbol: smarca2
Alias: wu:fa56c07|wu:fi27f11|zgc:66238
Full Name: probable global transcription activator SNF2L2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 53347 bases
Position: chr22:8055756-8109102
Accession: 108255836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000016524	BRK	PF07533.16	3.3e-17	1	1
ENSIPUP00000016574	BRK	PF07533.16	3.4e-17	1	1
ENSIPUP00000016475	BRK	PF07533.16	3.4e-17	1	1
ENSIPUP00000016627	BRK	PF07533.16	1.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000017172	-	7055	XM_017452114	ENSIPUP00000016475	1593 (aa)	XP_017307603	A0A2D0PLX7
ENSIPUT00000017222	-	7013	XM_017452117	ENSIPUP00000016524	1579 (aa)	XP_017307606	A0A2D0PQ95
ENSIPUT00000017328	-	4128	-	ENSIPUP00000016627	1375 (aa)	-	-
ENSIPUT00000017274	-	4791	XM_017452115	ENSIPUP00000016574	1591 (aa)	XP_017307604	A0A2D0PNK9

Gene Model

Click here to download ENSIPUG00000011060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000011060	smarca2	93	75.431	ENSIPUG00000006107	smarca4a	97	74.702
ENSIPUG00000011060	smarca2	96	71.997	ENSIPUG00000016346	-	99	71.587

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011060	smarca2	97	80.242	ENSG00000080503	SMARCA2	99	98.000	Homo_sapiens
ENSIPUG00000011060	smarca2	100	82.641	ENSAPOG00000002641	SMARCA2	100	84.931	Acanthochromis_polyacanthus
ENSIPUG00000011060	smarca2	94	77.518	ENSAMEG00000012325	SMARCA2	98	86.741	Ailuropoda_melanoleuca
ENSIPUG00000011060	smarca2	100	80.741	ENSACIG00000015607	SMARCA2	100	80.871	Amphilophus_citrinellus
ENSIPUG00000011060	smarca2	100	82.590	ENSAOCG00000009647	-	99	84.411	Amphiprion_ocellaris
ENSIPUG00000011060	smarca2	100	82.765	ENSAPEG00000007646	SMARCA2	99	84.708	Amphiprion_percula
ENSIPUG00000011060	smarca2	99	84.828	ENSATEG00000006916	SMARCA2	98	85.307	Anabas_testudineus
ENSIPUG00000011060	smarca2	94	79.403	ENSAPLG00000013873	SMARCA2	93	80.167	Anas_platyrhynchos
ENSIPUG00000011060	smarca2	96	81.574	ENSACAG00000002423	SMARCA2	99	81.278	Anolis_carolinensis
ENSIPUG00000011060	smarca2	97	80.792	ENSANAG00000026498	SMARCA2	100	80.860	Aotus_nancymaae
ENSIPUG00000011060	smarca2	100	81.920	ENSACLG00000004248	SMARCA2	99	83.641	Astatotilapia_calliptera
ENSIPUG00000011060	smarca2	100	91.285	ENSAMXG00000012404	smarca2	100	91.661	Astyanax_mexicanus
ENSIPUG00000011060	smarca2	97	81.765	ENSBTAG00000007494	SMARCA2	100	80.693	Bos_taurus
ENSIPUG00000011060	smarca2	97	81.654	ENSCJAG00000010710	SMARCA2	99	82.261	Callithrix_jacchus
ENSIPUG00000011060	smarca2	97	81.584	ENSCAFG00000002013	SMARCA2	100	80.581	Canis_familiaris
ENSIPUG00000011060	smarca2	76	87.548	ENSCAFG00020026802	SMARCA2	94	87.113	Canis_lupus_dingo
ENSIPUG00000011060	smarca2	97	81.765	ENSCHIG00000025863	SMARCA2	100	80.693	Capra_hircus
ENSIPUG00000011060	smarca2	97	78.516	ENSTSYG00000003858	SMARCA2	99	81.317	Carlito_syrichta
ENSIPUG00000011060	smarca2	97	79.313	ENSCAPG00000002890	SMARCA2	99	78.817	Cavia_aperea
ENSIPUG00000011060	smarca2	97	81.671	ENSCPOG00000005475	SMARCA2	100	80.683	Cavia_porcellus
ENSIPUG00000011060	smarca2	97	81.966	ENSCCAG00000030636	SMARCA2	99	81.812	Cebus_capucinus
ENSIPUG00000011060	smarca2	97	80.563	ENSCATG00000031470	SMARCA2	100	80.810	Cercocebus_atys
ENSIPUG00000011060	smarca2	97	81.441	ENSCLAG00000014484	SMARCA2	100	80.495	Chinchilla_lanigera
ENSIPUG00000011060	smarca2	94	81.443	ENSCSAG00000008650	SMARCA2	99	82.594	Chlorocebus_sabaeus
ENSIPUG00000011060	smarca2	85	82.563	ENSCHOG00000004316	SMARCA2	83	81.667	Choloepus_hoffmanni
ENSIPUG00000011060	smarca2	96	82.080	ENSCPBG00000025463	SMARCA2	99	82.473	Chrysemys_picta_bellii
ENSIPUG00000011060	smarca2	97	80.818	ENSCANG00000039597	SMARCA2	99	82.060	Colobus_angolensis_palliatus
ENSIPUG00000011060	smarca2	94	74.926	ENSCGRG00001002323	Smarca2	89	75.161	Cricetulus_griseus_chok1gshd
ENSIPUG00000011060	smarca2	99	79.269	ENSCSEG00000019311	SMARCA2	98	78.944	Cynoglossus_semilaevis
ENSIPUG00000011060	smarca2	92	82.769	ENSCVAG00000016571	SMARCA2	98	83.598	Cyprinodon_variegatus
ENSIPUG00000011060	smarca2	100	88.889	ENSDARG00000008904	smarca2	99	90.039	Danio_rerio
ENSIPUG00000011060	smarca2	97	81.118	ENSDNOG00000006402	SMARCA2	100	80.831	Dasypus_novemcinctus
ENSIPUG00000011060	smarca2	97	81.936	ENSDORG00000014832	Smarca2	100	81.285	Dipodomys_ordii
ENSIPUG00000011060	smarca2	79	61.218	FBgn0000212	brm	85	54.731	Drosophila_melanogaster
ENSIPUG00000011060	smarca2	98	71.408	ENSEBUG00000011442	-	95	69.886	Eptatretus_burgeri
ENSIPUG00000011060	smarca2	88	60.750	ENSEBUG00000002449	-	98	60.764	Eptatretus_burgeri
ENSIPUG00000011060	smarca2	97	81.520	ENSEASG00005010312	SMARCA2	100	81.024	Equus_asinus_asinus
ENSIPUG00000011060	smarca2	59	94.118	ENSEEUG00000015540	-	67	80.556	Erinaceus_europaeus
ENSIPUG00000011060	smarca2	94	83.625	ENSELUG00000010318	smarca2	99	80.682	Esox_lucius
ENSIPUG00000011060	smarca2	96	81.453	ENSFCAG00000001568	SMARCA2	100	80.519	Felis_catus
ENSIPUG00000011060	smarca2	96	81.872	ENSFALG00000010416	SMARCA2	100	82.105	Ficedula_albicollis
ENSIPUG00000011060	smarca2	97	80.424	ENSFDAG00000010502	SMARCA2	100	79.021	Fukomys_damarensis
ENSIPUG00000011060	smarca2	97	84.838	ENSFHEG00000021250	SMARCA2	100	83.013	Fundulus_heteroclitus
ENSIPUG00000011060	smarca2	98	79.481	ENSGMOG00000014229	SMARCA2	99	79.014	Gadus_morhua
ENSIPUG00000011060	smarca2	96	82.549	ENSGALG00000010164	SMARCA2	99	82.484	Gallus_gallus
ENSIPUG00000011060	smarca2	92	82.572	ENSGAFG00000001164	SMARCA2	95	77.785	Gambusia_affinis
ENSIPUG00000011060	smarca2	98	81.933	ENSGACG00000014488	SMARCA2	99	82.186	Gasterosteus_aculeatus
ENSIPUG00000011060	smarca2	96	82.080	ENSGAGG00000024412	SMARCA2	99	82.473	Gopherus_agassizii
ENSIPUG00000011060	smarca2	90	88.056	ENSGGOG00000000513	SMARCA2	100	85.692	Gorilla_gorilla
ENSIPUG00000011060	smarca2	100	82.200	ENSHBUG00000006691	SMARCA2	99	83.891	Haplochromis_burtoni
ENSIPUG00000011060	smarca2	94	79.508	ENSHGLG00000005215	SMARCA2	98	80.529	Heterocephalus_glaber_female
ENSIPUG00000011060	smarca2	99	81.542	ENSHGLG00100010496	SMARCA2	100	80.911	Heterocephalus_glaber_male
ENSIPUG00000011060	smarca2	97	79.691	ENSHCOG00000015348	-	91	88.713	Hippocampus_comes
ENSIPUG00000011060	smarca2	97	81.948	ENSSTOG00000006812	SMARCA2	100	81.110	Ictidomys_tridecemlineatus
ENSIPUG00000011060	smarca2	97	80.396	ENSJJAG00000010867	Smarca2	100	80.985	Jaculus_jaculus
ENSIPUG00000011060	smarca2	98	82.405	ENSKMAG00000015844	-	99	82.832	Kryptolebias_marmoratus
ENSIPUG00000011060	smarca2	100	84.181	ENSLOCG00000011499	smarca2	99	85.634	Lepisosteus_oculatus
ENSIPUG00000011060	smarca2	97	81.020	ENSLAFG00000014061	SMARCA2	100	80.248	Loxodonta_africana
ENSIPUG00000011060	smarca2	99	78.980	ENSMFAG00000003814	SMARCA2	100	80.438	Macaca_fascicularis
ENSIPUG00000011060	smarca2	97	80.703	ENSMMUG00000015279	SMARCA2	100	80.997	Macaca_mulatta
ENSIPUG00000011060	smarca2	97	80.447	ENSMNEG00000041069	SMARCA2	100	81.074	Macaca_nemestrina
ENSIPUG00000011060	smarca2	94	80.667	ENSMLEG00000027418	SMARCA2	99	81.911	Mandrillus_leucophaeus
ENSIPUG00000011060	smarca2	100	82.047	ENSMAMG00000003056	SMARCA2	100	85.156	Mastacembelus_armatus
ENSIPUG00000011060	smarca2	100	82.477	ENSMZEG00005020709	SMARCA2	99	84.051	Maylandia_zebra
ENSIPUG00000011060	smarca2	80	65.870	ENSMGAG00000005160	-	100	68.792	Meleagris_gallopavo
ENSIPUG00000011060	smarca2	97	81.013	ENSMICG00000005162	SMARCA2	100	81.062	Microcebus_murinus
ENSIPUG00000011060	smarca2	97	80.153	ENSMOCG00000001611	Smarca2	100	80.585	Microtus_ochrogaster
ENSIPUG00000011060	smarca2	97	82.843	ENSMMOG00000014196	SMARCA2	99	80.931	Mola_mola
ENSIPUG00000011060	smarca2	97	81.806	ENSMODG00000003578	SMARCA2	100	81.410	Monodelphis_domestica
ENSIPUG00000011060	smarca2	97	85.745	ENSMALG00000009611	SMARCA2	99	83.099	Monopterus_albus
ENSIPUG00000011060	smarca2	96	79.936	MGP_CAROLIEiJ_G0022841	Smarca2	100	79.926	Mus_caroli
ENSIPUG00000011060	smarca2	96	79.987	ENSMUSG00000024921	Smarca2	99	98.000	Mus_musculus
ENSIPUG00000011060	smarca2	97	78.688	MGP_PahariEiJ_G0014334	Smarca2	100	79.988	Mus_pahari
ENSIPUG00000011060	smarca2	96	79.809	MGP_SPRETEiJ_G0023759	Smarca2	97	86.765	Mus_spretus
ENSIPUG00000011060	smarca2	79	86.378	ENSMPUG00000005171	SMARCA2	94	85.415	Mustela_putorius_furo
ENSIPUG00000011060	smarca2	97	77.487	ENSMLUG00000002342	SMARCA2	99	77.889	Myotis_lucifugus
ENSIPUG00000011060	smarca2	97	79.505	ENSNGAG00000000108	Smarca2	99	79.526	Nannospalax_galili
ENSIPUG00000011060	smarca2	90	80.563	ENSNBRG00000017998	SMARCA2	94	80.961	Neolamprologus_brichardi
ENSIPUG00000011060	smarca2	94	80.208	ENSNLEG00000008575	SMARCA2	98	80.620	Nomascus_leucogenys
ENSIPUG00000011060	smarca2	99	74.578	ENSMEUG00000009812	SMARCA2	100	74.845	Notamacropus_eugenii
ENSIPUG00000011060	smarca2	79	82.827	ENSOPRG00000013474	SMARCA2	100	76.255	Ochotona_princeps
ENSIPUG00000011060	smarca2	94	80.525	ENSODEG00000005452	SMARCA2	98	80.711	Octodon_degus
ENSIPUG00000011060	smarca2	99	83.489	ENSONIG00000014163	SMARCA2	99	83.970	Oreochromis_niloticus
ENSIPUG00000011060	smarca2	53	83.420	ENSOANG00000008299	-	95	89.218	Ornithorhynchus_anatinus
ENSIPUG00000011060	smarca2	94	80.263	ENSOCUG00000006320	SMARCA2	100	80.435	Oryctolagus_cuniculus
ENSIPUG00000011060	smarca2	100	81.184	ENSORLG00000020820	SMARCA2	100	83.297	Oryzias_latipes
ENSIPUG00000011060	smarca2	100	81.235	ENSORLG00015006289	SMARCA2	99	83.260	Oryzias_latipes_hsok
ENSIPUG00000011060	smarca2	100	82.050	ENSOMEG00000009736	-	99	83.217	Oryzias_melastigma
ENSIPUG00000011060	smarca2	97	79.117	ENSOGAG00000017053	SMARCA2	99	79.221	Otolemur_garnettii
ENSIPUG00000011060	smarca2	97	80.554	ENSOARG00000013265	SMARCA2	100	79.988	Ovis_aries
ENSIPUG00000011060	smarca2	92	88.116	ENSPPAG00000038717	SMARCA2	96	88.317	Pan_paniscus
ENSIPUG00000011060	smarca2	96	81.518	ENSPPRG00000001879	SMARCA2	100	80.581	Panthera_pardus
ENSIPUG00000011060	smarca2	97	82.219	ENSPTRG00000051168	SMARCA2	100	81.308	Pan_troglodytes
ENSIPUG00000011060	smarca2	97	76.264	ENSPANG00000025121	SMARCA2	100	75.414	Papio_anubis
ENSIPUG00000011060	smarca2	99	86.421	ENSPKIG00000018469	-	99	86.667	Paramormyrops_kingsleyae
ENSIPUG00000011060	smarca2	96	81.515	ENSPSIG00000006284	SMARCA2	99	81.986	Pelodiscus_sinensis
ENSIPUG00000011060	smarca2	97	79.770	ENSPMGG00000013696	-	98	77.926	Periophthalmus_magnuspinnatus
ENSIPUG00000011060	smarca2	97	79.490	ENSPEMG00000019821	Smarca2	100	79.800	Peromyscus_maniculatus_bairdii
ENSIPUG00000011060	smarca2	95	70.754	ENSPMAG00000005337	-	97	70.682	Petromyzon_marinus
ENSIPUG00000011060	smarca2	99	81.409	ENSPCIG00000015658	SMARCA2	100	81.347	Phascolarctos_cinereus
ENSIPUG00000011060	smarca2	98	83.165	ENSPFOG00000001856	SMARCA2	99	83.763	Poecilia_formosa
ENSIPUG00000011060	smarca2	98	82.530	ENSPLAG00000017829	SMARCA2	96	83.125	Poecilia_latipinna
ENSIPUG00000011060	smarca2	98	82.519	ENSPMEG00000001815	-	99	83.114	Poecilia_mexicana
ENSIPUG00000011060	smarca2	98	82.091	ENSPREG00000013800	SMARCA2	99	82.688	Poecilia_reticulata
ENSIPUG00000011060	smarca2	97	80.383	ENSPPYG00000019258	SMARCA2	100	80.700	Pongo_abelii
ENSIPUG00000011060	smarca2	76	73.592	ENSPCAG00000016969	SMARCA2	76	73.592	Procavia_capensis
ENSIPUG00000011060	smarca2	97	79.116	ENSPCOG00000025709	SMARCA2	99	79.914	Propithecus_coquereli
ENSIPUG00000011060	smarca2	90	82.873	ENSPVAG00000000901	SMARCA2	94	81.655	Pteropus_vampyrus
ENSIPUG00000011060	smarca2	100	80.485	ENSPNYG00000004533	SMARCA2	99	81.639	Pundamilia_nyererei
ENSIPUG00000011060	smarca2	99	92.557	ENSPNAG00000014635	smarca2	98	93.838	Pygocentrus_nattereri
ENSIPUG00000011060	smarca2	97	79.235	ENSRNOG00000011931	Smarca2	100	79.348	Rattus_norvegicus
ENSIPUG00000011060	smarca2	100	78.205	ENSRBIG00000038618	SMARCA2	94	86.939	Rhinopithecus_bieti
ENSIPUG00000011060	smarca2	99	79.302	ENSRROG00000019271	SMARCA2	99	82.299	Rhinopithecus_roxellana
ENSIPUG00000011060	smarca2	99	79.109	ENSSBOG00000034827	SMARCA2	100	78.801	Saimiri_boliviensis_boliviensis
ENSIPUG00000011060	smarca2	97	81.730	ENSSHAG00000007884	SMARCA2	99	82.364	Sarcophilus_harrisii
ENSIPUG00000011060	smarca2	99	87.187	ENSSFOG00015014870	SMARCA2	99	87.303	Scleropages_formosus
ENSIPUG00000011060	smarca2	100	81.358	ENSSMAG00000013707	SMARCA2	99	82.979	Scophthalmus_maximus
ENSIPUG00000011060	smarca2	99	82.592	ENSSDUG00000008852	-	99	83.313	Seriola_dumerili
ENSIPUG00000011060	smarca2	99	82.272	ENSSLDG00000025449	SMARCA2	98	82.071	Seriola_lalandi_dorsalis
ENSIPUG00000011060	smarca2	95	77.439	ENSSARG00000007888	SMARCA2	91	78.947	Sorex_araneus
ENSIPUG00000011060	smarca2	94	79.571	ENSSPUG00000001629	SMARCA2	98	78.431	Sphenodon_punctatus
ENSIPUG00000011060	smarca2	97	85.830	ENSSPAG00000020091	-	99	84.703	Stegastes_partitus
ENSIPUG00000011060	smarca2	97	81.572	ENSSSCG00000005232	SMARCA2	100	80.544	Sus_scrofa
ENSIPUG00000011060	smarca2	96	81.872	ENSTGUG00000005460	SMARCA2	99	82.334	Taeniopygia_guttata
ENSIPUG00000011060	smarca2	98	82.353	ENSTRUG00000015619	SMARCA2	99	82.669	Takifugu_rubripes
ENSIPUG00000011060	smarca2	69	100.000	ENSTBEG00000008767	SMARCA2	68	100.000	Tupaia_belangeri
ENSIPUG00000011060	smarca2	94	81.416	ENSTTRG00000002033	SMARCA2	95	82.021	Tursiops_truncatus
ENSIPUG00000011060	smarca2	95	81.886	ENSUAMG00000024701	SMARCA2	99	82.293	Ursus_americanus
ENSIPUG00000011060	smarca2	88	78.735	ENSVPAG00000001204	SMARCA2	94	80.972	Vicugna_pacos
ENSIPUG00000011060	smarca2	76	87.274	ENSVVUG00000004598	SMARCA2	96	86.867	Vulpes_vulpes
ENSIPUG00000011060	smarca2	99	78.080	ENSXETG00000015299	smarca2	100	76.890	Xenopus_tropicalis
ENSIPUG00000011060	smarca2	97	83.069	ENSXCOG00000011073	SMARCA2	99	83.417	Xiphophorus_couchianus
ENSIPUG00000011060	smarca2	98	82.188	ENSXMAG00000015611	SMARCA2	99	82.782	Xiphophorus_maculatus