EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000011259 (Gene tree)
Gene ID: 108257279
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 14738 bases
Position: chr24:18710167-18724904
Accession: 108257279
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000016882	CPSF_A	PF03178.15	6.7e-74	1	1
ENSIPUP00000016833	CPSF_A	PF03178.15	2.1e-73	1	2
ENSIPUP00000016833	CPSF_A	PF03178.15	2.1e-73	2	2
ENSIPUP00000016775	CPSF_A	PF03178.15	4.5e-69	1	2
ENSIPUP00000016775	CPSF_A	PF03178.15	4.5e-69	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000017546	-	4230	XM_017454907	ENSIPUP00000016833	1409 (aa)	XP_017310396	-
ENSIPUT00000017596	-	4359	XM_017454908	ENSIPUP00000016882	1452 (aa)	XP_017310397	-
ENSIPUT00000017484	-	4311	-	ENSIPUP00000016775	1436 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000011259's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011259's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011259	cpsf1	100	76.701	ENSG00000071894	CPSF1	100	80.093	Homo_sapiens
ENSIPUG00000011259	cpsf1	100	82.873	ENSAPOG00000019621	cpsf1	100	83.277	Acanthochromis_polyacanthus
ENSIPUG00000011259	cpsf1	97	75.230	ENSAMEG00000005557	CPSF1	99	75.608	Ailuropoda_melanoleuca
ENSIPUG00000011259	cpsf1	100	82.280	ENSACIG00000006112	cpsf1	100	82.624	Amphilophus_citrinellus
ENSIPUG00000011259	cpsf1	100	82.990	ENSAOCG00000007120	cpsf1	100	83.059	Amphiprion_ocellaris
ENSIPUG00000011259	cpsf1	100	83.539	ENSAPEG00000005755	cpsf1	100	83.608	Amphiprion_percula
ENSIPUG00000011259	cpsf1	100	83.345	ENSATEG00000011097	cpsf1	100	83.614	Anabas_testudineus
ENSIPUG00000011259	cpsf1	93	72.587	ENSACAG00000009655	CPSF1	100	72.366	Anolis_carolinensis
ENSIPUG00000011259	cpsf1	100	76.632	ENSANAG00000036514	CPSF1	100	76.632	Aotus_nancymaae
ENSIPUG00000011259	cpsf1	99	82.209	ENSACLG00000012231	cpsf1	99	82.688	Astatotilapia_calliptera
ENSIPUG00000011259	cpsf1	100	83.024	ENSAMXG00000008485	cpsf1	100	82.955	Astyanax_mexicanus
ENSIPUG00000011259	cpsf1	100	74.696	ENSBTAG00000008355	CPSF1	100	75.232	Bos_taurus
ENSIPUG00000011259	cpsf1	100	31.792	WBGene00022301	cpsf-1	99	34.819	Caenorhabditis_elegans
ENSIPUG00000011259	cpsf1	100	76.564	ENSCJAG00000021421	CPSF1	100	76.564	Callithrix_jacchus
ENSIPUG00000011259	cpsf1	97	76.454	ENSCAFG00000001600	CPSF1	99	76.918	Canis_familiaris
ENSIPUG00000011259	cpsf1	100	76.253	ENSCAFG00020020821	CPSF1	100	76.253	Canis_lupus_dingo
ENSIPUG00000011259	cpsf1	100	72.180	ENSCHIG00000015833	CPSF1	100	72.180	Capra_hircus
ENSIPUG00000011259	cpsf1	100	76.770	ENSTSYG00000028560	CPSF1	100	80.556	Carlito_syrichta
ENSIPUG00000011259	cpsf1	97	75.586	ENSCAPG00000014921	CPSF1	98	75.966	Cavia_aperea
ENSIPUG00000011259	cpsf1	100	75.017	ENSCPOG00000011448	CPSF1	100	75.017	Cavia_porcellus
ENSIPUG00000011259	cpsf1	100	76.632	ENSCCAG00000037658	CPSF1	100	80.275	Cebus_capucinus
ENSIPUG00000011259	cpsf1	100	76.701	ENSCATG00000037234	CPSF1	100	80.093	Cercocebus_atys
ENSIPUG00000011259	cpsf1	100	76.305	ENSCLAG00000012166	CPSF1	100	76.305	Chinchilla_lanigera
ENSIPUG00000011259	cpsf1	100	76.632	ENSCSAG00000008502	CPSF1	100	76.632	Chlorocebus_sabaeus
ENSIPUG00000011259	cpsf1	99	78.056	ENSCPBG00000018910	CPSF1	96	78.264	Chrysemys_picta_bellii
ENSIPUG00000011259	cpsf1	96	46.378	ENSCING00000000514	-	100	46.378	Ciona_intestinalis
ENSIPUG00000011259	cpsf1	99	46.594	ENSCSAVG00000002293	-	98	51.402	Ciona_savignyi
ENSIPUG00000011259	cpsf1	98	74.071	ENSCANG00000032760	CPSF1	100	80.556	Colobus_angolensis_palliatus
ENSIPUG00000011259	cpsf1	100	76.204	ENSCGRG00001016344	Cpsf1	100	76.204	Cricetulus_griseus_chok1gshd
ENSIPUG00000011259	cpsf1	100	74.278	ENSCGRG00000003118	Cpsf1	100	74.278	Cricetulus_griseus_crigri
ENSIPUG00000011259	cpsf1	100	81.293	ENSCSEG00000013464	cpsf1	100	81.224	Cynoglossus_semilaevis
ENSIPUG00000011259	cpsf1	83	87.912	ENSCVAG00000014059	cpsf1	100	78.241	Cyprinodon_variegatus
ENSIPUG00000011259	cpsf1	100	85.930	ENSDARG00000034178	cpsf1	100	86.067	Danio_rerio
ENSIPUG00000011259	cpsf1	57	81.159	ENSDNOG00000043654	CPSF1	94	81.159	Dasypus_novemcinctus
ENSIPUG00000011259	cpsf1	97	76.600	ENSDORG00000006278	Cpsf1	99	76.681	Dipodomys_ordii
ENSIPUG00000011259	cpsf1	100	42.310	FBgn0024698	Cpsf160	100	42.390	Drosophila_melanogaster
ENSIPUG00000011259	cpsf1	81	85.235	ENSETEG00000006022	CPSF1	83	85.235	Echinops_telfairi
ENSIPUG00000011259	cpsf1	100	76.527	ENSEASG00005010774	CPSF1	100	76.527	Equus_asinus_asinus
ENSIPUG00000011259	cpsf1	100	76.390	ENSECAG00000022209	CPSF1	100	76.390	Equus_caballus
ENSIPUG00000011259	cpsf1	100	76.063	ENSEEUG00000000471	CPSF1	100	76.063	Erinaceus_europaeus
ENSIPUG00000011259	cpsf1	100	82.917	ENSELUG00000012271	cpsf1	100	82.917	Esox_lucius
ENSIPUG00000011259	cpsf1	100	76.511	ENSFDAG00000016060	CPSF1	100	76.511	Fukomys_damarensis
ENSIPUG00000011259	cpsf1	100	79.891	ENSFHEG00000016801	cpsf1	100	80.027	Fundulus_heteroclitus
ENSIPUG00000011259	cpsf1	100	82.030	ENSGMOG00000000796	cpsf1	100	82.305	Gadus_morhua
ENSIPUG00000011259	cpsf1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSIPUG00000011259	cpsf1	100	83.573	ENSGACG00000008703	cpsf1	100	83.504	Gasterosteus_aculeatus
ENSIPUG00000011259	cpsf1	100	75.463	ENSGAGG00000004276	CPSF1	98	78.304	Gopherus_agassizii
ENSIPUG00000011259	cpsf1	100	76.754	ENSGGOG00000016185	CPSF1	100	80.093	Gorilla_gorilla
ENSIPUG00000011259	cpsf1	100	83.310	ENSHBUG00000018900	cpsf1	100	83.379	Haplochromis_burtoni
ENSIPUG00000011259	cpsf1	100	76.442	ENSHGLG00000016139	CPSF1	100	76.442	Heterocephalus_glaber_female
ENSIPUG00000011259	cpsf1	100	76.374	ENSHGLG00100009750	CPSF1	100	76.374	Heterocephalus_glaber_male
ENSIPUG00000011259	cpsf1	100	80.814	ENSHCOG00000018509	cpsf1	100	80.881	Hippocampus_comes
ENSIPUG00000011259	cpsf1	97	75.809	ENSSTOG00000009957	CPSF1	98	76.550	Ictidomys_tridecemlineatus
ENSIPUG00000011259	cpsf1	100	76.616	ENSJJAG00000023002	Cpsf1	100	76.616	Jaculus_jaculus
ENSIPUG00000011259	cpsf1	91	78.438	ENSKMAG00000001940	cpsf1	99	78.438	Kryptolebias_marmoratus
ENSIPUG00000011259	cpsf1	100	81.868	ENSLBEG00000003601	cpsf1	100	82.155	Labrus_bergylta
ENSIPUG00000011259	cpsf1	88	74.522	ENSLACG00000000233	CPSF1	100	64.786	Latimeria_chalumnae
ENSIPUG00000011259	cpsf1	100	80.287	ENSLOCG00000008484	cpsf1	100	80.424	Lepisosteus_oculatus
ENSIPUG00000011259	cpsf1	97	76.454	ENSLAFG00000022601	CPSF1	99	76.846	Loxodonta_africana
ENSIPUG00000011259	cpsf1	100	76.632	ENSMFAG00000037013	CPSF1	100	80.093	Macaca_fascicularis
ENSIPUG00000011259	cpsf1	100	76.632	ENSMMUG00000007380	CPSF1	100	80.093	Macaca_mulatta
ENSIPUG00000011259	cpsf1	97	77.082	ENSMNEG00000043564	CPSF1	100	80.093	Macaca_nemestrina
ENSIPUG00000011259	cpsf1	100	76.632	ENSMLEG00000043010	CPSF1	100	80.093	Mandrillus_leucophaeus
ENSIPUG00000011259	cpsf1	100	82.186	ENSMAMG00000003803	cpsf1	100	82.647	Mastacembelus_armatus
ENSIPUG00000011259	cpsf1	100	80.632	ENSMZEG00005001168	cpsf1	100	80.632	Maylandia_zebra
ENSIPUG00000011259	cpsf1	100	76.135	ENSMAUG00000003601	Cpsf1	100	76.135	Mesocricetus_auratus
ENSIPUG00000011259	cpsf1	100	76.616	ENSMICG00000015767	CPSF1	100	76.616	Microcebus_murinus
ENSIPUG00000011259	cpsf1	100	76.272	ENSMOCG00000022758	Cpsf1	100	76.272	Microtus_ochrogaster
ENSIPUG00000011259	cpsf1	100	82.853	ENSMMOG00000021245	cpsf1	100	82.692	Mola_mola
ENSIPUG00000011259	cpsf1	100	77.145	ENSMODG00000010755	CPSF1	100	77.160	Monodelphis_domestica
ENSIPUG00000011259	cpsf1	100	82.297	ENSMALG00000020545	cpsf1	100	82.826	Monopterus_albus
ENSIPUG00000011259	cpsf1	100	76.341	MGP_CAROLIEiJ_G0019936	Cpsf1	100	76.341	Mus_caroli
ENSIPUG00000011259	cpsf1	100	76.272	ENSMUSG00000034022	Cpsf1	100	76.272	Mus_musculus
ENSIPUG00000011259	cpsf1	100	76.341	MGP_PahariEiJ_G0019946	Cpsf1	100	76.341	Mus_pahari
ENSIPUG00000011259	cpsf1	100	76.341	MGP_SPRETEiJ_G0020839	Cpsf1	100	76.341	Mus_spretus
ENSIPUG00000011259	cpsf1	94	76.725	ENSMPUG00000006419	CPSF1	93	76.725	Mustela_putorius_furo
ENSIPUG00000011259	cpsf1	100	76.616	ENSNGAG00000022460	Cpsf1	100	76.616	Nannospalax_galili
ENSIPUG00000011259	cpsf1	100	77.831	ENSNBRG00000000813	cpsf1	100	77.831	Neolamprologus_brichardi
ENSIPUG00000011259	cpsf1	83	87.261	ENSNLEG00000010633	-	94	87.261	Nomascus_leucogenys
ENSIPUG00000011259	cpsf1	82	86.047	ENSMEUG00000014922	CPSF1	84	86.047	Notamacropus_eugenii
ENSIPUG00000011259	cpsf1	60	79.612	ENSOPRG00000004693	-	70	79.612	Ochotona_princeps
ENSIPUG00000011259	cpsf1	100	76.442	ENSODEG00000013995	CPSF1	100	76.442	Octodon_degus
ENSIPUG00000011259	cpsf1	100	83.791	ENSONIG00000007676	cpsf1	100	83.791	Oreochromis_niloticus
ENSIPUG00000011259	cpsf1	58	78.261	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSIPUG00000011259	cpsf1	100	81.153	ENSORLG00000013544	cpsf1	100	81.153	Oryzias_latipes
ENSIPUG00000011259	cpsf1	100	81.220	ENSORLG00020021693	cpsf1	100	81.220	Oryzias_latipes_hni
ENSIPUG00000011259	cpsf1	100	81.220	ENSORLG00015009979	cpsf1	100	81.220	Oryzias_latipes_hsok
ENSIPUG00000011259	cpsf1	100	81.026	ENSOMEG00000011849	cpsf1	100	81.369	Oryzias_melastigma
ENSIPUG00000011259	cpsf1	100	76.770	ENSOGAG00000000315	CPSF1	100	76.770	Otolemur_garnettii
ENSIPUG00000011259	cpsf1	100	76.770	ENSPPAG00000019280	CPSF1	100	81.900	Pan_paniscus
ENSIPUG00000011259	cpsf1	100	76.770	ENSPTRG00000049288	-	100	81.900	Pan_troglodytes
ENSIPUG00000011259	cpsf1	100	75.473	ENSPTRG00000051253	-	100	81.900	Pan_troglodytes
ENSIPUG00000011259	cpsf1	97	77.082	ENSPANG00000015005	CPSF1	100	80.093	Papio_anubis
ENSIPUG00000011259	cpsf1	100	85.096	ENSPKIG00000002582	cpsf1	100	85.450	Paramormyrops_kingsleyae
ENSIPUG00000011259	cpsf1	100	77.092	ENSPCIG00000009035	CPSF1	100	77.092	Phascolarctos_cinereus
ENSIPUG00000011259	cpsf1	100	80.149	ENSPFOG00000012870	cpsf1	100	80.460	Poecilia_formosa
ENSIPUG00000011259	cpsf1	100	80.608	ENSPREG00000016307	cpsf1	100	80.608	Poecilia_reticulata
ENSIPUG00000011259	cpsf1	100	69.691	ENSPPYG00000018973	CPSF1	100	69.966	Pongo_abelii
ENSIPUG00000011259	cpsf1	91	74.788	ENSPCAG00000011541	CPSF1	93	74.788	Procavia_capensis
ENSIPUG00000011259	cpsf1	100	73.265	ENSPCOG00000020001	CPSF1	100	80.093	Propithecus_coquereli
ENSIPUG00000011259	cpsf1	91	77.493	ENSPVAG00000006761	CPSF1	91	77.493	Pteropus_vampyrus
ENSIPUG00000011259	cpsf1	100	82.444	ENSPNYG00000004906	cpsf1	100	82.838	Pundamilia_nyererei
ENSIPUG00000011259	cpsf1	100	82.442	ENSPNAG00000024395	cpsf1	100	82.442	Pygocentrus_nattereri
ENSIPUG00000011259	cpsf1	100	76.272	ENSRNOG00000030705	Cpsf1	100	76.272	Rattus_norvegicus
ENSIPUG00000011259	cpsf1	100	76.632	ENSRBIG00000044907	CPSF1	100	80.556	Rhinopithecus_bieti
ENSIPUG00000011259	cpsf1	100	76.564	ENSRROG00000044861	CPSF1	100	80.556	Rhinopithecus_roxellana
ENSIPUG00000011259	cpsf1	97	76.868	ENSSBOG00000027177	CPSF1	99	77.022	Saimiri_boliviensis_boliviensis
ENSIPUG00000011259	cpsf1	100	76.886	ENSSHAG00000006500	CPSF1	100	76.886	Sarcophilus_harrisii
ENSIPUG00000011259	cpsf1	100	82.567	ENSSFOG00015004606	cpsf1	100	85.642	Scleropages_formosus
ENSIPUG00000011259	cpsf1	100	82.365	ENSSMAG00000020547	cpsf1	100	82.579	Scophthalmus_maximus
ENSIPUG00000011259	cpsf1	100	83.459	ENSSDUG00000001100	cpsf1	100	83.459	Seriola_dumerili
ENSIPUG00000011259	cpsf1	100	83.379	ENSSLDG00000003619	cpsf1	100	83.310	Seriola_lalandi_dorsalis
ENSIPUG00000011259	cpsf1	89	73.163	ENSSARG00000003643	CPSF1	92	73.163	Sorex_araneus
ENSIPUG00000011259	cpsf1	96	78.388	ENSSPUG00000014396	CPSF1	100	78.419	Sphenodon_punctatus
ENSIPUG00000011259	cpsf1	100	83.187	ENSSPAG00000005349	cpsf1	100	83.649	Stegastes_partitus
ENSIPUG00000011259	cpsf1	100	75.668	ENSSSCG00000005906	CPSF1	100	75.668	Sus_scrofa
ENSIPUG00000011259	cpsf1	96	81.232	ENSTRUG00000013134	cpsf1	99	81.333	Takifugu_rubripes
ENSIPUG00000011259	cpsf1	100	81.750	ENSTNIG00000014027	cpsf1	100	81.750	Tetraodon_nigroviridis
ENSIPUG00000011259	cpsf1	77	72.250	ENSTBEG00000001756	CPSF1	91	71.743	Tupaia_belangeri
ENSIPUG00000011259	cpsf1	90	76.724	ENSTTRG00000001937	CPSF1	90	76.724	Tursiops_truncatus
ENSIPUG00000011259	cpsf1	97	76.629	ENSUAMG00000006476	CPSF1	97	77.022	Ursus_americanus
ENSIPUG00000011259	cpsf1	100	80.701	ENSXCOG00000003608	cpsf1	100	80.769	Xiphophorus_couchianus
ENSIPUG00000011259	cpsf1	100	80.357	ENSXMAG00000005798	cpsf1	100	80.426	Xiphophorus_maculatus