EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000011271 (Gene tree)
Gene ID: 108267757
Gene Symbol: hnrnpc
Alias: fb57h12|fi16b11|wu:fb57h12|wu:fi16b11|zgc:55701
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 6492 bases
Position: chr7:9151686-9158177
Accession: 108267757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000016756	RRM_1	PF00076.22	4.6e-13	1	1
ENSIPUP00000016703	RRM_1	PF00076.22	7.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000017410	-	924	XM_017472156	ENSIPUP00000016703	307 (aa)	XP_017327645	-
ENSIPUT00000017464	-	693	-	ENSIPUP00000016756	230 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000011271's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000011271	hnrnpc	98	81.333	ENSIPUG00000008666	zgc:55733	94	83.256
ENSIPUG00000011271	hnrnpc	94	55.652	ENSIPUG00000000507	ralyl	77	55.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011271	hnrnpc	95	54.260	ENSG00000184672	RALYL	92	76.923	Homo_sapiens
ENSIPUG00000011271	hnrnpc	97	84.685	ENSAPOG00000006963	hnrnpc	84	80.233	Acanthochromis_polyacanthus
ENSIPUG00000011271	hnrnpc	98	81.498	ENSACIG00000000270	-	93	77.143	Amphilophus_citrinellus
ENSIPUG00000011271	hnrnpc	98	79.646	ENSACIG00000016568	-	92	79.098	Amphilophus_citrinellus
ENSIPUG00000011271	hnrnpc	97	84.685	ENSAOCG00000003896	-	84	79.845	Amphiprion_ocellaris
ENSIPUG00000011271	hnrnpc	98	80.088	ENSAOCG00000021616	-	80	81.008	Amphiprion_ocellaris
ENSIPUG00000011271	hnrnpc	97	84.685	ENSAPEG00000001489	-	84	79.845	Amphiprion_percula
ENSIPUG00000011271	hnrnpc	97	81.166	ENSAPEG00000019962	-	83	81.395	Amphiprion_percula
ENSIPUG00000011271	hnrnpc	98	79.736	ENSATEG00000018006	-	89	78.279	Anabas_testudineus
ENSIPUG00000011271	hnrnpc	97	79.372	ENSATEG00000011734	-	85	79.528	Anabas_testudineus
ENSIPUG00000011271	hnrnpc	95	54.222	ENSAPLG00000015574	RALYL	76	54.911	Anas_platyrhynchos
ENSIPUG00000011271	hnrnpc	95	53.333	ENSACAG00000028464	RALYL	75	54.464	Anolis_carolinensis
ENSIPUG00000011271	hnrnpc	95	54.709	ENSANAG00000023383	RALYL	76	55.204	Aotus_nancymaae
ENSIPUG00000011271	hnrnpc	98	80.088	ENSACLG00000005707	-	88	79.377	Astatotilapia_calliptera
ENSIPUG00000011271	hnrnpc	95	82.110	ENSACLG00000013636	-	86	81.008	Astatotilapia_calliptera
ENSIPUG00000011271	hnrnpc	98	79.913	ENSACLG00000000995	-	92	77.510	Astatotilapia_calliptera
ENSIPUG00000011271	hnrnpc	98	81.333	ENSAMXG00000034915	zgc:55733	88	77.200	Astyanax_mexicanus
ENSIPUG00000011271	hnrnpc	87	86.000	ENSAMXG00000042946	hnrnpc	97	80.105	Astyanax_mexicanus
ENSIPUG00000011271	hnrnpc	95	54.260	ENSCJAG00000000402	RALYL	76	55.204	Callithrix_jacchus
ENSIPUG00000011271	hnrnpc	94	55.856	ENSCPOG00000012314	RALYL	75	55.605	Cavia_porcellus
ENSIPUG00000011271	hnrnpc	95	54.260	ENSCCAG00000025003	RALYL	76	76.923	Cebus_capucinus
ENSIPUG00000011271	hnrnpc	95	54.260	ENSCATG00000042145	RALYL	76	54.955	Cercocebus_atys
ENSIPUG00000011271	hnrnpc	95	55.357	ENSCLAG00000005228	RALYL	77	53.478	Chinchilla_lanigera
ENSIPUG00000011271	hnrnpc	95	52.889	ENSCHOG00000013228	RALYL	75	51.570	Choloepus_hoffmanni
ENSIPUG00000011271	hnrnpc	95	54.260	ENSCANG00000039144	RALYL	76	55.204	Colobus_angolensis_palliatus
ENSIPUG00000011271	hnrnpc	95	54.222	ENSCGRG00001009241	Ralyl	77	52.814	Cricetulus_griseus_chok1gshd
ENSIPUG00000011271	hnrnpc	98	71.491	ENSCSEG00000019769	-	73	73.272	Cynoglossus_semilaevis
ENSIPUG00000011271	hnrnpc	98	78.319	ENSCSEG00000021349	-	80	77.953	Cynoglossus_semilaevis
ENSIPUG00000011271	hnrnpc	99	81.579	ENSCVAG00000016981	-	79	78.378	Cyprinodon_variegatus
ENSIPUG00000011271	hnrnpc	97	68.000	ENSCVAG00000002797	-	85	65.490	Cyprinodon_variegatus
ENSIPUG00000011271	hnrnpc	98	84.000	ENSDARG00000103845	zgc:55733	92	78.400	Danio_rerio
ENSIPUG00000011271	hnrnpc	98	82.667	ENSDARG00000053810	hnrnpc	80	84.127	Danio_rerio
ENSIPUG00000011271	hnrnpc	95	55.111	ENSDORG00000003721	Ralyl	77	53.913	Dipodomys_ordii
ENSIPUG00000011271	hnrnpc	75	57.225	ENSETEG00000014028	RALYL	82	60.494	Echinops_telfairi
ENSIPUG00000011271	hnrnpc	97	42.060	ENSEBUG00000012363	hnrnpc	67	47.162	Eptatretus_burgeri
ENSIPUG00000011271	hnrnpc	95	47.111	ENSEBUG00000006049	RALYL	74	46.512	Eptatretus_burgeri
ENSIPUG00000011271	hnrnpc	95	54.667	ENSEEUG00000007202	RALYL	78	53.712	Erinaceus_europaeus
ENSIPUG00000011271	hnrnpc	98	77.500	ENSELUG00000007714	-	90	73.004	Esox_lucius
ENSIPUG00000011271	hnrnpc	98	82.743	ENSELUG00000004132	-	89	77.947	Esox_lucius
ENSIPUG00000011271	hnrnpc	95	53.778	ENSFALG00000008647	RALYL	97	55.140	Ficedula_albicollis
ENSIPUG00000011271	hnrnpc	99	77.551	ENSFHEG00000007278	-	99	68.210	Fundulus_heteroclitus
ENSIPUG00000011271	hnrnpc	97	79.464	ENSFHEG00000003605	-	85	77.220	Fundulus_heteroclitus
ENSIPUG00000011271	hnrnpc	52	88.750	ENSGMOG00000013154	-	56	88.750	Gadus_morhua
ENSIPUG00000011271	hnrnpc	52	87.500	ENSGMOG00000010344	-	57	87.500	Gadus_morhua
ENSIPUG00000011271	hnrnpc	95	54.222	ENSGALG00000036938	RALYL	77	52.814	Gallus_gallus
ENSIPUG00000011271	hnrnpc	100	77.056	ENSGAFG00000020992	-	83	79.216	Gambusia_affinis
ENSIPUG00000011271	hnrnpc	98	76.316	ENSGAFG00000020486	-	85	78.947	Gambusia_affinis
ENSIPUG00000011271	hnrnpc	100	81.116	ENSGACG00000017772	-	97	78.656	Gasterosteus_aculeatus
ENSIPUG00000011271	hnrnpc	98	70.044	ENSGACG00000018932	-	89	72.973	Gasterosteus_aculeatus
ENSIPUG00000011271	hnrnpc	95	54.260	ENSGGOG00000000841	RALYL	76	54.955	Gorilla_gorilla
ENSIPUG00000011271	hnrnpc	95	82.569	ENSHBUG00000018342	-	84	81.783	Haplochromis_burtoni
ENSIPUG00000011271	hnrnpc	97	80.000	ENSHBUG00000010527	-	83	78.195	Haplochromis_burtoni
ENSIPUG00000011271	hnrnpc	95	54.911	ENSHGLG00000004866	RALYL	75	55.157	Heterocephalus_glaber_female
ENSIPUG00000011271	hnrnpc	95	54.911	ENSHGLG00100017480	RALYL	75	55.157	Heterocephalus_glaber_male
ENSIPUG00000011271	hnrnpc	97	80.085	ENSHCOG00000012333	hnrnpc	95	68.212	Hippocampus_comes
ENSIPUG00000011271	hnrnpc	95	54.667	ENSSTOG00000012583	RALYL	79	53.247	Ictidomys_tridecemlineatus
ENSIPUG00000011271	hnrnpc	99	77.729	ENSKMAG00000018265	-	81	78.764	Kryptolebias_marmoratus
ENSIPUG00000011271	hnrnpc	96	80.455	ENSKMAG00000011170	-	84	79.231	Kryptolebias_marmoratus
ENSIPUG00000011271	hnrnpc	97	80.269	ENSLBEG00000006979	-	85	75.100	Labrus_bergylta
ENSIPUG00000011271	hnrnpc	97	74.786	ENSLBEG00000024418	-	85	71.264	Labrus_bergylta
ENSIPUG00000011271	hnrnpc	97	81.778	ENSLBEG00000006193	-	80	81.423	Labrus_bergylta
ENSIPUG00000011271	hnrnpc	96	72.072	ENSLOCG00000002560	hnrnpc	89	71.103	Lepisosteus_oculatus
ENSIPUG00000011271	hnrnpc	95	54.260	ENSMNEG00000033288	RALYL	76	54.955	Macaca_nemestrina
ENSIPUG00000011271	hnrnpc	95	54.260	ENSMLEG00000038284	RALYL	76	54.955	Mandrillus_leucophaeus
ENSIPUG00000011271	hnrnpc	97	79.911	ENSMAMG00000008033	-	89	79.216	Mastacembelus_armatus
ENSIPUG00000011271	hnrnpc	99	82.819	ENSMAMG00000012236	-	83	81.783	Mastacembelus_armatus
ENSIPUG00000011271	hnrnpc	98	79.565	ENSMZEG00005020460	-	84	81.395	Maylandia_zebra
ENSIPUG00000011271	hnrnpc	98	80.088	ENSMZEG00005024249	-	82	79.377	Maylandia_zebra
ENSIPUG00000011271	hnrnpc	95	54.222	ENSMAUG00000015149	Ralyl	77	52.814	Mesocricetus_auratus
ENSIPUG00000011271	hnrnpc	95	54.911	ENSMICG00000005558	RALYL	79	76.923	Microcebus_murinus
ENSIPUG00000011271	hnrnpc	95	54.222	ENSMOCG00000017371	Ralyl	77	52.814	Microtus_ochrogaster
ENSIPUG00000011271	hnrnpc	98	82.743	ENSMMOG00000019520	-	96	78.629	Mola_mola
ENSIPUG00000011271	hnrnpc	97	83.482	ENSMMOG00000021465	-	88	81.818	Mola_mola
ENSIPUG00000011271	hnrnpc	97	80.357	ENSMALG00000014623	-	82	78.210	Monopterus_albus
ENSIPUG00000011271	hnrnpc	96	75.000	ENSMALG00000007520	-	84	72.065	Monopterus_albus
ENSIPUG00000011271	hnrnpc	95	53.778	ENSMUSG00000039717	Ralyl	92	75.641	Mus_musculus
ENSIPUG00000011271	hnrnpc	94	56.250	ENSMPUG00000010724	RALYL	77	52.381	Mustela_putorius_furo
ENSIPUG00000011271	hnrnpc	95	54.222	ENSNGAG00000013375	Ralyl	77	53.043	Nannospalax_galili
ENSIPUG00000011271	hnrnpc	98	80.617	ENSNBRG00000015676	-	90	76.562	Neolamprologus_brichardi
ENSIPUG00000011271	hnrnpc	98	84.444	ENSNBRG00000004912	-	93	81.333	Neolamprologus_brichardi
ENSIPUG00000011271	hnrnpc	95	53.604	ENSNLEG00000002702	RALYL	76	53.043	Nomascus_leucogenys
ENSIPUG00000011271	hnrnpc	82	50.259	ENSOPRG00000013650	-	98	48.168	Ochotona_princeps
ENSIPUG00000011271	hnrnpc	95	54.911	ENSODEG00000001012	RALYL	77	53.275	Octodon_degus
ENSIPUG00000011271	hnrnpc	97	80.000	ENSONIG00000018350	-	83	78.195	Oreochromis_niloticus
ENSIPUG00000011271	hnrnpc	95	83.486	ENSONIG00000007859	-	92	77.154	Oreochromis_niloticus
ENSIPUG00000011271	hnrnpc	99	76.596	ENSORLG00000003144	-	82	76.471	Oryzias_latipes
ENSIPUG00000011271	hnrnpc	97	71.239	ENSORLG00000009999	-	83	69.531	Oryzias_latipes
ENSIPUG00000011271	hnrnpc	97	71.239	ENSORLG00020018228	hnrnpc	83	69.531	Oryzias_latipes_hni
ENSIPUG00000011271	hnrnpc	97	71.239	ENSORLG00015019755	-	83	69.531	Oryzias_latipes_hsok
ENSIPUG00000011271	hnrnpc	99	76.596	ENSORLG00015009460	-	82	76.471	Oryzias_latipes_hsok
ENSIPUG00000011271	hnrnpc	96	72.197	ENSOMEG00000020488	-	83	69.847	Oryzias_melastigma
ENSIPUG00000011271	hnrnpc	99	79.386	ENSOMEG00000022665	-	83	78.868	Oryzias_melastigma
ENSIPUG00000011271	hnrnpc	95	54.260	ENSPPAG00000038705	RALYL	76	54.955	Pan_paniscus
ENSIPUG00000011271	hnrnpc	95	56.637	ENSPPRG00000018612	RALYL	77	55.204	Panthera_pardus
ENSIPUG00000011271	hnrnpc	95	56.637	ENSPTIG00000020331	RALYL	77	55.204	Panthera_tigris_altaica
ENSIPUG00000011271	hnrnpc	95	54.260	ENSPTRG00000020381	RALYL	76	54.955	Pan_troglodytes
ENSIPUG00000011271	hnrnpc	95	54.260	ENSPANG00000029305	RALYL	76	54.955	Papio_anubis
ENSIPUG00000011271	hnrnpc	98	82.895	ENSPKIG00000022837	-	83	79.545	Paramormyrops_kingsleyae
ENSIPUG00000011271	hnrnpc	100	79.915	ENSPKIG00000008592	-	83	80.303	Paramormyrops_kingsleyae
ENSIPUG00000011271	hnrnpc	95	54.222	ENSPSIG00000011135	RALYL	77	52.814	Pelodiscus_sinensis
ENSIPUG00000011271	hnrnpc	99	82.018	ENSPMGG00000013144	-	92	76.955	Periophthalmus_magnuspinnatus
ENSIPUG00000011271	hnrnpc	97	72.197	ENSPMGG00000017774	-	95	61.778	Periophthalmus_magnuspinnatus
ENSIPUG00000011271	hnrnpc	95	54.222	ENSPEMG00000016447	Ralyl	75	54.911	Peromyscus_maniculatus_bairdii
ENSIPUG00000011271	hnrnpc	95	51.724	ENSPMAG00000002407	RALYL	98	50.870	Petromyzon_marinus
ENSIPUG00000011271	hnrnpc	95	77.169	ENSPFOG00000001583	-	84	76.834	Poecilia_formosa
ENSIPUG00000011271	hnrnpc	99	77.632	ENSPFOG00000002643	-	82	78.244	Poecilia_formosa
ENSIPUG00000011271	hnrnpc	99	77.632	ENSPLAG00000000061	-	80	79.457	Poecilia_latipinna
ENSIPUG00000011271	hnrnpc	95	76.256	ENSPLAG00000015305	-	84	75.676	Poecilia_latipinna
ENSIPUG00000011271	hnrnpc	99	78.070	ENSPMEG00000016524	-	80	79.845	Poecilia_mexicana
ENSIPUG00000011271	hnrnpc	95	77.626	ENSPMEG00000004802	-	87	75.940	Poecilia_mexicana
ENSIPUG00000011271	hnrnpc	95	76.712	ENSPREG00000007928	-	84	76.448	Poecilia_reticulata
ENSIPUG00000011271	hnrnpc	99	76.754	ENSPREG00000001852	-	86	78.682	Poecilia_reticulata
ENSIPUG00000011271	hnrnpc	95	54.464	ENSPVAG00000010821	RALYL	77	52.838	Pteropus_vampyrus
ENSIPUG00000011271	hnrnpc	97	82.511	ENSPNYG00000020293	-	86	81.028	Pundamilia_nyererei
ENSIPUG00000011271	hnrnpc	98	80.617	ENSPNYG00000003747	-	89	78.195	Pundamilia_nyererei
ENSIPUG00000011271	hnrnpc	97	90.625	ENSPNAG00000015686	hnrnpc	85	91.935	Pygocentrus_nattereri
ENSIPUG00000011271	hnrnpc	98	75.325	ENSPNAG00000019200	zgc:55733	83	75.686	Pygocentrus_nattereri
ENSIPUG00000011271	hnrnpc	95	54.260	ENSRROG00000023925	RALYL	81	75.000	Rhinopithecus_roxellana
ENSIPUG00000011271	hnrnpc	98	79.825	ENSSFOG00015012015	-	92	75.200	Scleropages_formosus
ENSIPUG00000011271	hnrnpc	98	82.174	ENSSFOG00015012924	-	81	96.250	Scleropages_formosus
ENSIPUG00000011271	hnrnpc	97	79.464	ENSSMAG00000013592	-	82	77.519	Scophthalmus_maximus
ENSIPUG00000011271	hnrnpc	99	78.261	ENSSMAG00000011147	-	90	77.236	Scophthalmus_maximus
ENSIPUG00000011271	hnrnpc	98	82.222	ENSSDUG00000006730	-	84	78.030	Seriola_dumerili
ENSIPUG00000011271	hnrnpc	97	82.432	ENSSDUG00000001723	-	84	80.233	Seriola_dumerili
ENSIPUG00000011271	hnrnpc	97	82.883	ENSSLDG00000007454	-	84	80.620	Seriola_lalandi_dorsalis
ENSIPUG00000011271	hnrnpc	98	82.222	ENSSLDG00000007474	-	89	80.233	Seriola_lalandi_dorsalis
ENSIPUG00000011271	hnrnpc	99	78.696	ENSSPAG00000013996	-	83	78.788	Stegastes_partitus
ENSIPUG00000011271	hnrnpc	97	83.333	ENSSPAG00000023204	-	84	81.395	Stegastes_partitus
ENSIPUG00000011271	hnrnpc	95	54.222	ENSTGUG00000011689	RALYL	78	53.478	Taeniopygia_guttata
ENSIPUG00000011271	hnrnpc	98	80.444	ENSTRUG00000020158	-	83	75.494	Takifugu_rubripes
ENSIPUG00000011271	hnrnpc	94	76.577	ENSTNIG00000007427	-	83	74.806	Tetraodon_nigroviridis
ENSIPUG00000011271	hnrnpc	97	73.991	ENSTNIG00000000334	-	93	70.930	Tetraodon_nigroviridis
ENSIPUG00000011271	hnrnpc	95	47.534	ENSTBEG00000005551	RALYL	89	47.186	Tupaia_belangeri
ENSIPUG00000011271	hnrnpc	95	51.786	ENSTTRG00000015762	RALYL	77	51.556	Tursiops_truncatus
ENSIPUG00000011271	hnrnpc	94	50.901	ENSVPAG00000008501	RALYL	77	50.455	Vicugna_pacos
ENSIPUG00000011271	hnrnpc	95	72.727	ENSXCOG00000006552	-	83	70.543	Xiphophorus_couchianus
ENSIPUG00000011271	hnrnpc	71	85.276	ENSXCOG00000019434	-	68	85.276	Xiphophorus_couchianus
ENSIPUG00000011271	hnrnpc	96	77.027	ENSXMAG00000009333	-	84	76.062	Xiphophorus_maculatus
ENSIPUG00000011271	hnrnpc	99	76.754	ENSXMAG00000022849	-	84	78.682	Xiphophorus_maculatus