EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000011285 (Gene tree)
Gene ID: 108277104
Gene Symbol: scaf4
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 27913 bases
Position: chr16:16826771-16854683
Accession: 108277104
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000016637	RRM_1	PF00076.22	2.7e-07	1	1
ENSIPUP00000016682	RRM_1	PF00076.22	3.2e-07	1	1
ENSIPUP00000016631	RRM_1	PF00076.22	3.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000017342	-	4975	-	ENSIPUP00000016637	965 (aa)	-	-
ENSIPUT00000017389	-	4813	-	ENSIPUP00000016682	911 (aa)	-	-
ENSIPUT00000017335	-	5020	XM_017489486	ENSIPUP00000016631	980 (aa)	XP_017344975	A0A2D0SRP4

Gene Model

Click here to download ENSIPUG00000011285's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011285's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011285	scaf4	63	63.514	ENSG00000156304	SCAF4	69	49.770	Homo_sapiens
ENSIPUG00000011285	scaf4	67	65.385	ENSAPOG00000019615	scaf4b	74	56.748	Acanthochromis_polyacanthus
ENSIPUG00000011285	scaf4	83	75.000	ENSAPOG00000002946	scaf4a	83	59.420	Acanthochromis_polyacanthus
ENSIPUG00000011285	scaf4	83	75.000	ENSAOCG00000000615	scaf4a	81	59.420	Amphiprion_ocellaris
ENSIPUG00000011285	scaf4	83	75.000	ENSAPEG00000021229	scaf4a	83	59.420	Amphiprion_percula
ENSIPUG00000011285	scaf4	66	62.372	ENSAPLG00000002509	SCAF4	52	46.970	Anas_platyrhynchos
ENSIPUG00000011285	scaf4	63	63.213	ENSANAG00000037494	SCAF4	69	49.770	Aotus_nancymaae
ENSIPUG00000011285	scaf4	100	71.128	ENSAMXG00000008585	scaf4a	100	70.459	Astyanax_mexicanus
ENSIPUG00000011285	scaf4	63	62.182	ENSBTAG00000018855	SCAF4	70	58.869	Bos_taurus
ENSIPUG00000011285	scaf4	63	63.024	ENSCJAG00000008993	SCAF4	69	49.770	Callithrix_jacchus
ENSIPUG00000011285	scaf4	62	62.191	ENSCAFG00020026019	SCAF4	71	64.286	Canis_lupus_dingo
ENSIPUG00000011285	scaf4	63	62.182	ENSCHIG00000008385	SCAF4	70	58.270	Capra_hircus
ENSIPUG00000011285	scaf4	62	63.764	ENSTSYG00000011344	SCAF4	89	46.459	Carlito_syrichta
ENSIPUG00000011285	scaf4	63	62.704	ENSCPOG00000012443	SCAF4	70	56.667	Cavia_porcellus
ENSIPUG00000011285	scaf4	63	63.308	ENSCCAG00000033727	SCAF4	69	49.770	Cebus_capucinus
ENSIPUG00000011285	scaf4	63	62.707	ENSCATG00000030379	SCAF4	68	49.770	Cercocebus_atys
ENSIPUG00000011285	scaf4	61	62.195	ENSCLAG00000006298	SCAF4	69	56.218	Chinchilla_lanigera
ENSIPUG00000011285	scaf4	63	63.008	ENSCANG00000029847	SCAF4	69	49.770	Colobus_angolensis_palliatus
ENSIPUG00000011285	scaf4	53	76.829	ENSCGRG00001020821	Scaf4	65	58.793	Cricetulus_griseus_chok1gshd
ENSIPUG00000011285	scaf4	53	76.829	ENSCGRG00000014360	Scaf4	65	58.511	Cricetulus_griseus_crigri
ENSIPUG00000011285	scaf4	95	55.072	ENSCSEG00000019549	scaf4a	74	52.511	Cynoglossus_semilaevis
ENSIPUG00000011285	scaf4	51	58.759	ENSCSEG00000012808	-	53	70.833	Cynoglossus_semilaevis
ENSIPUG00000011285	scaf4	55	82.564	ENSELUG00000009909	scaf4a	78	80.603	Esox_lucius
ENSIPUG00000011285	scaf4	63	62.481	ENSFCAG00000002228	SCAF4	70	59.278	Felis_catus
ENSIPUG00000011285	scaf4	64	59.489	ENSFHEG00000007634	scaf4b	53	76.923	Fundulus_heteroclitus
ENSIPUG00000011285	scaf4	75	60.903	ENSFHEG00000017866	scaf4a	59	55.442	Fundulus_heteroclitus
ENSIPUG00000011285	scaf4	76	55.137	ENSGMOG00000015188	scaf4a	64	56.364	Gadus_morhua
ENSIPUG00000011285	scaf4	65	64.590	ENSGALG00000033965	SCAF4	61	53.623	Gallus_gallus
ENSIPUG00000011285	scaf4	73	71.154	ENSGAFG00000019460	scaf4a	77	69.811	Gambusia_affinis
ENSIPUG00000011285	scaf4	56	72.727	ENSGACG00000020580	scaf4a	71	73.585	Gasterosteus_aculeatus
ENSIPUG00000011285	scaf4	70	60.462	ENSGGOG00000015557	SCAF4	64	55.926	Gorilla_gorilla
ENSIPUG00000011285	scaf4	99	50.712	ENSHBUG00000007920	scaf4a	82	59.420	Haplochromis_burtoni
ENSIPUG00000011285	scaf4	63	60.352	ENSHGLG00000010582	SCAF4	70	57.750	Heterocephalus_glaber_female
ENSIPUG00000011285	scaf4	53	79.487	ENSSTOG00000004450	SCAF4	67	50.000	Ictidomys_tridecemlineatus
ENSIPUG00000011285	scaf4	89	46.084	ENSKMAG00000005742	scaf4b	53	76.351	Kryptolebias_marmoratus
ENSIPUG00000011285	scaf4	82	58.926	ENSLBEG00000014675	scaf4a	84	51.852	Labrus_bergylta
ENSIPUG00000011285	scaf4	99	71.154	ENSLOCG00000009162	scaf4a	93	69.811	Lepisosteus_oculatus
ENSIPUG00000011285	scaf4	63	64.688	ENSLAFG00000010710	SCAF4	66	59.162	Loxodonta_africana
ENSIPUG00000011285	scaf4	63	62.707	ENSMMUG00000001712	SCAF4	68	48.724	Macaca_mulatta
ENSIPUG00000011285	scaf4	63	62.707	ENSMNEG00000032966	SCAF4	68	49.770	Macaca_nemestrina
ENSIPUG00000011285	scaf4	62	62.290	ENSMLEG00000039674	SCAF4	68	49.770	Mandrillus_leucophaeus
ENSIPUG00000011285	scaf4	74	44.394	ENSMAMG00000013223	scaf4a	82	48.552	Mastacembelus_armatus
ENSIPUG00000011285	scaf4	66	62.135	ENSMGAG00000014515	SCAF4	52	48.333	Meleagris_gallopavo
ENSIPUG00000011285	scaf4	62	64.207	ENSMICG00000005256	SCAF4	69	50.459	Microcebus_murinus
ENSIPUG00000011285	scaf4	52	76.220	ENSMOCG00000012087	Scaf4	66	59.231	Microtus_ochrogaster
ENSIPUG00000011285	scaf4	52	75.000	MGP_CAROLIEiJ_G0020944	Scaf4	65	58.568	Mus_caroli
ENSIPUG00000011285	scaf4	52	74.390	ENSMUSG00000022983	Scaf4	65	58.568	Mus_musculus
ENSIPUG00000011285	scaf4	52	75.000	MGP_PahariEiJ_G0016649	Scaf4	65	58.312	Mus_pahari
ENSIPUG00000011285	scaf4	52	74.390	MGP_SPRETEiJ_G0021850	Scaf4	65	58.824	Mus_spretus
ENSIPUG00000011285	scaf4	51	75.625	ENSMLUG00000011472	SCAF4	68	59.067	Myotis_lucifugus
ENSIPUG00000011285	scaf4	63	63.514	ENSNLEG00000003569	SCAF4	69	49.770	Nomascus_leucogenys
ENSIPUG00000011285	scaf4	62	60.619	ENSODEG00000002718	SCAF4	70	54.412	Octodon_degus
ENSIPUG00000011285	scaf4	83	73.585	ENSONIG00000004687	scaf4a	89	73.585	Oreochromis_niloticus
ENSIPUG00000011285	scaf4	75	73.077	ENSORLG00000004384	scaf4a	62	58.675	Oryzias_latipes
ENSIPUG00000011285	scaf4	52	60.944	ENSORLG00000003420	scaf4b	53	80.000	Oryzias_latipes
ENSIPUG00000011285	scaf4	53	58.029	ENSORLG00020013853	scaf4b	53	80.714	Oryzias_latipes_hni
ENSIPUG00000011285	scaf4	100	73.077	ENSORLG00020011857	scaf4a	57	73.077	Oryzias_latipes_hni
ENSIPUG00000011285	scaf4	100	73.077	ENSORLG00015017880	scaf4a	61	69.767	Oryzias_latipes_hsok
ENSIPUG00000011285	scaf4	100	73.077	ENSOMEG00000014482	scaf4a	90	56.429	Oryzias_melastigma
ENSIPUG00000011285	scaf4	62	61.002	ENSOARG00000013894	SCAF4	69	56.266	Ovis_aries
ENSIPUG00000011285	scaf4	63	63.514	ENSPPAG00000028535	SCAF4	69	49.770	Pan_paniscus
ENSIPUG00000011285	scaf4	62	62.253	ENSPPRG00000000635	SCAF4	69	59.309	Panthera_pardus
ENSIPUG00000011285	scaf4	63	63.514	ENSPTRG00000013848	SCAF4	69	49.770	Pan_troglodytes
ENSIPUG00000011285	scaf4	63	62.707	ENSPANG00000017332	SCAF4	69	49.770	Papio_anubis
ENSIPUG00000011285	scaf4	68	73.077	ENSPKIG00000022408	scaf4a	99	69.315	Paramormyrops_kingsleyae
ENSIPUG00000011285	scaf4	93	56.522	ENSPFOG00000017156	scaf4a	91	69.811	Poecilia_formosa
ENSIPUG00000011285	scaf4	73	71.154	ENSPLAG00000001972	scaf4a	85	69.811	Poecilia_latipinna
ENSIPUG00000011285	scaf4	64	57.971	ENSPMEG00000006666	-	53	71.250	Poecilia_mexicana
ENSIPUG00000011285	scaf4	62	64.420	ENSPCOG00000018710	SCAF4	69	51.039	Propithecus_coquereli
ENSIPUG00000011285	scaf4	100	75.429	ENSPNAG00000016892	scaf4a	100	73.785	Pygocentrus_nattereri
ENSIPUG00000011285	scaf4	52	75.610	ENSRNOG00000002104	Scaf4	64	59.591	Rattus_norvegicus
ENSIPUG00000011285	scaf4	91	55.719	ENSSFOG00015006338	scaf4a	96	54.118	Scleropages_formosus
ENSIPUG00000011285	scaf4	52	67.725	ENSTGUG00000013464	SCAF4	76	60.606	Taeniopygia_guttata
ENSIPUG00000011285	scaf4	69	58.333	ENSTRUG00000009536	-	55	76.190	Takifugu_rubripes
ENSIPUG00000011285	scaf4	67	56.522	ENSXETG00000007351	scaf4	82	59.218	Xenopus_tropicalis