EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000011376 (Gene tree)
Gene ID: 108272357
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 6119 bases
Position: chr12:16925510-16931628
Accession: 108272357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000016749	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000017458	-	4118	XM_017480728	ENSIPUP00000016749	213 (aa)	XP_017336217	A0A2D0S0G0

Gene Model

Click here to download ENSIPUG00000011376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011376's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000011376	rab42a	77	34.756	ENSIPUG00000010794	rab22a	82	34.756
ENSIPUG00000011376	rab42a	97	37.198	ENSIPUG00000019382	rab41	93	37.198
ENSIPUG00000011376	rab42a	83	39.205	ENSIPUG00000010859	rab18b	85	39.205
ENSIPUG00000011376	rab42a	76	33.333	ENSIPUG00000017200	-	79	33.333
ENSIPUG00000011376	rab42a	89	47.368	ENSIPUG00000007539	rab2a	89	47.368
ENSIPUG00000011376	rab42a	96	32.692	ENSIPUG00000024531	rab34	79	32.692
ENSIPUG00000011376	rab42a	97	35.749	ENSIPUG00000018098	rab6b	94	35.749
ENSIPUG00000011376	rab42a	79	40.828	ENSIPUG00000020226	RAB15	82	40.828
ENSIPUG00000011376	rab42a	99	37.619	ENSIPUG00000012218	RAB25	96	37.619
ENSIPUG00000011376	rab42a	77	43.293	ENSIPUG00000024622	rab35	80	43.293
ENSIPUG00000011376	rab42a	86	41.304	ENSIPUG00000017890	Rab1A	91	41.304
ENSIPUG00000011376	rab42a	78	45.349	ENSIPUG00000012509	-	77	45.349
ENSIPUG00000011376	rab42a	75	34.161	ENSIPUG00000004259	kras	98	31.414
ENSIPUG00000011376	rab42a	71	35.526	ENSIPUG00000000962	MRAS	91	31.771
ENSIPUG00000011376	rab42a	98	37.850	ENSIPUG00000007415	rab14	97	37.850
ENSIPUG00000011376	rab42a	71	33.553	ENSIPUG00000013954	rasm	79	33.133
ENSIPUG00000011376	rab42a	96	33.014	ENSIPUG00000017447	rab34a	79	33.014
ENSIPUG00000011376	rab42a	97	38.647	ENSIPUG00000021401	Rab11a	95	38.647
ENSIPUG00000011376	rab42a	80	32.432	ENSIPUG00000000761	zgc	71	32.432
ENSIPUG00000011376	rab42a	96	36.893	ENSIPUG00000022394	zgc:101559	85	36.893
ENSIPUG00000011376	rab42a	78	35.928	ENSIPUG00000018050	RAB31	85	35.928
ENSIPUG00000011376	rab42a	69	44.595	ENSIPUG00000017684	rab33b	63	44.595
ENSIPUG00000011376	rab42a	97	39.234	ENSIPUG00000016261	RAB19	92	39.234
ENSIPUG00000011376	rab42a	97	39.904	ENSIPUG00000006091	RAB11A	95	39.904
ENSIPUG00000011376	rab42a	76	32.121	ENSIPUG00000022445	RAB7A	79	32.121
ENSIPUG00000011376	rab42a	77	43.293	ENSIPUG00000011489	Rab35	80	43.293
ENSIPUG00000011376	rab42a	96	38.498	ENSIPUG00000019237	rab15	96	38.498
ENSIPUG00000011376	rab42a	71	33.775	ENSIPUG00000006702	rras	79	32.927
ENSIPUG00000011376	rab42a	99	36.321	ENSIPUG00000006126	Rab25	97	36.321
ENSIPUG00000011376	rab42a	98	39.524	ENSIPUG00000015525	-	97	39.524
ENSIPUG00000011376	rab42a	77	33.133	ENSIPUG00000022673	rab36	63	33.133
ENSIPUG00000011376	rab42a	55	43.697	ENSIPUG00000009784	-	53	43.697
ENSIPUG00000011376	rab42a	98	37.321	ENSIPUG00000019927	rab11bb	95	37.321
ENSIPUG00000011376	rab42a	66	36.429	ENSIPUG00000016494	rab23	72	35.526
ENSIPUG00000011376	rab42a	97	36.232	ENSIPUG00000015058	rab6b	94	36.232
ENSIPUG00000011376	rab42a	84	42.697	ENSIPUG00000008650	rab1a	87	42.697
ENSIPUG00000011376	rab42a	78	43.713	ENSIPUG00000003199	rab13	82	43.713
ENSIPUG00000011376	rab42a	71	35.099	ENSIPUG00000022502	hrasb	85	34.146
ENSIPUG00000011376	rab42a	100	58.216	ENSIPUG00000024203	rab39ba	100	58.216
ENSIPUG00000011376	rab42a	97	35.266	ENSIPUG00000021740	rab6a	94	35.266
ENSIPUG00000011376	rab42a	89	33.854	ENSIPUG00000023392	rab5a	88	33.854
ENSIPUG00000011376	rab42a	100	59.155	ENSIPUG00000020833	rab39b	100	59.155
ENSIPUG00000011376	rab42a	85	42.308	ENSIPUG00000020508	rab1ab	89	42.308
ENSIPUG00000011376	rab42a	87	39.247	ENSIPUG00000017401	rab12	83	37.864
ENSIPUG00000011376	rab42a	98	37.799	ENSIPUG00000025100	rab11b	95	37.799
ENSIPUG00000011376	rab42a	71	35.099	ENSIPUG00000006053	hras	85	34.146
ENSIPUG00000011376	rab42a	75	40.854	ENSIPUG00000014269	rab33a	71	40.854
ENSIPUG00000011376	rab42a	78	39.412	ENSIPUG00000014035	rab9a	83	39.412
ENSIPUG00000011376	rab42a	77	47.561	ENSIPUG00000021010	Rab30	81	47.561
ENSIPUG00000011376	rab42a	77	35.976	ENSIPUG00000020082	rab5c	76	35.976
ENSIPUG00000011376	rab42a	77	30.588	ENSIPUG00000005254	RERG	82	30.588
ENSIPUG00000011376	rab42a	82	32.571	ENSIPUG00000024568	rheb	92	32.571
ENSIPUG00000011376	rab42a	77	38.182	ENSIPUG00000016561	rab9b	73	38.182

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011376	rab42a	100	87.156	ENSAPOG00000009188	rab42a	100	88.991	Acanthochromis_polyacanthus
ENSIPUG00000011376	rab42a	100	87.156	ENSACIG00000003102	rab42a	100	88.073	Amphilophus_citrinellus
ENSIPUG00000011376	rab42a	100	86.239	ENSAOCG00000012921	rab42a	83	87.615	Amphiprion_ocellaris
ENSIPUG00000011376	rab42a	100	86.239	ENSAPEG00000007713	rab42a	83	87.615	Amphiprion_percula
ENSIPUG00000011376	rab42a	100	86.697	ENSATEG00000009052	rab42a	100	86.697	Anabas_testudineus
ENSIPUG00000011376	rab42a	100	88.479	ENSACLG00000007514	rab42a	100	88.479	Astatotilapia_calliptera
ENSIPUG00000011376	rab42a	100	95.305	ENSAMXG00000032729	rab42a	100	95.305	Astyanax_mexicanus
ENSIPUG00000011376	rab42a	100	85.780	ENSCSEG00000010582	rab42a	100	85.780	Cynoglossus_semilaevis
ENSIPUG00000011376	rab42a	100	47.664	ENSDARG00000102580	CU571310.1	99	47.664	Danio_rerio
ENSIPUG00000011376	rab42a	100	93.897	ENSDARG00000034215	rab42a	100	93.897	Danio_rerio
ENSIPUG00000011376	rab42a	100	87.037	ENSELUG00000010345	rab42a	100	87.037	Esox_lucius
ENSIPUG00000011376	rab42a	100	86.697	ENSFHEG00000013106	rab42a	100	86.697	Fundulus_heteroclitus
ENSIPUG00000011376	rab42a	100	85.321	ENSGAFG00000002141	rab42a	100	85.321	Gambusia_affinis
ENSIPUG00000011376	rab42a	100	88.479	ENSHBUG00000015126	rab42a	82	88.479	Haplochromis_burtoni
ENSIPUG00000011376	rab42a	100	86.697	ENSKMAG00000007267	rab42a	100	87.615	Kryptolebias_marmoratus
ENSIPUG00000011376	rab42a	100	86.636	ENSLBEG00000001193	rab42a	100	87.558	Labrus_bergylta
ENSIPUG00000011376	rab42a	100	66.667	ENSLACG00000012755	-	100	66.667	Latimeria_chalumnae
ENSIPUG00000011376	rab42a	100	49.533	ENSLOCG00000015825	-	99	49.533	Lepisosteus_oculatus
ENSIPUG00000011376	rab42a	100	85.915	ENSLOCG00000003453	rab42a	100	85.915	Lepisosteus_oculatus
ENSIPUG00000011376	rab42a	100	87.156	ENSMAMG00000002296	rab42a	100	88.532	Mastacembelus_armatus
ENSIPUG00000011376	rab42a	100	88.479	ENSMZEG00005012460	rab42a	82	88.479	Maylandia_zebra
ENSIPUG00000011376	rab42a	100	86.239	ENSMMOG00000014358	rab42a	100	86.239	Mola_mola
ENSIPUG00000011376	rab42a	100	88.532	ENSNBRG00000021487	rab42a	82	88.532	Neolamprologus_brichardi
ENSIPUG00000011376	rab42a	100	88.073	ENSORLG00000022335	rab42a	100	88.073	Oryzias_latipes
ENSIPUG00000011376	rab42a	100	88.073	ENSORLG00020013895	rab42a	100	88.073	Oryzias_latipes_hni
ENSIPUG00000011376	rab42a	100	88.073	ENSORLG00015004273	rab42a	100	88.073	Oryzias_latipes_hsok
ENSIPUG00000011376	rab42a	100	88.073	ENSOMEG00000020418	rab42a	100	88.073	Oryzias_melastigma
ENSIPUG00000011376	rab42a	99	48.585	ENSPKIG00000015234	-	99	48.585	Paramormyrops_kingsleyae
ENSIPUG00000011376	rab42a	100	78.873	ENSPKIG00000021215	-	100	78.873	Paramormyrops_kingsleyae
ENSIPUG00000011376	rab42a	92	92.386	ENSPMGG00000024112	rab42a	90	92.386	Periophthalmus_magnuspinnatus
ENSIPUG00000011376	rab42a	100	85.321	ENSPFOG00000004838	rab42a	82	85.321	Poecilia_formosa
ENSIPUG00000011376	rab42a	100	85.321	ENSPLAG00000005628	rab42a	100	85.321	Poecilia_latipinna
ENSIPUG00000011376	rab42a	100	85.321	ENSPMEG00000019497	rab42a	100	85.321	Poecilia_mexicana
ENSIPUG00000011376	rab42a	100	85.321	ENSPREG00000013962	rab42a	100	85.321	Poecilia_reticulata
ENSIPUG00000011376	rab42a	100	88.479	ENSPNYG00000010325	rab42a	82	88.479	Pundamilia_nyererei
ENSIPUG00000011376	rab42a	100	96.244	ENSPNAG00000016567	rab42a	100	96.244	Pygocentrus_nattereri
ENSIPUG00000011376	rab42a	100	89.202	ENSSFOG00015020732	rab42a	100	89.202	Scleropages_formosus
ENSIPUG00000011376	rab42a	100	47.196	ENSSFOG00015016000	-	97	47.196	Scleropages_formosus
ENSIPUG00000011376	rab42a	100	85.780	ENSSMAG00000020311	rab42a	100	85.780	Scophthalmus_maximus
ENSIPUG00000011376	rab42a	100	87.615	ENSSDUG00000011851	rab42a	100	87.615	Seriola_dumerili
ENSIPUG00000011376	rab42a	100	87.615	ENSSLDG00000020354	rab42a	100	87.615	Seriola_lalandi_dorsalis
ENSIPUG00000011376	rab42a	100	87.156	ENSSPAG00000016167	rab42a	100	88.532	Stegastes_partitus
ENSIPUG00000011376	rab42a	100	88.532	ENSTRUG00000010224	rab42a	100	88.532	Takifugu_rubripes
ENSIPUG00000011376	rab42a	100	85.780	ENSXCOG00000003428	rab42a	100	85.780	Xiphophorus_couchianus
ENSIPUG00000011376	rab42a	100	85.780	ENSXMAG00000028376	rab42a	100	85.780	Xiphophorus_maculatus