EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000011591 (Gene tree)
Gene ID: 108266691
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 11833 bases
Position: chr6:28922952-28934784
Accession: 108266691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000017069	CMS1	PF14617.6	1.9e-30	1	1
ENSIPUP00000017069	DEAD	PF00270.29	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000017795	-	5410	XM_017470340	ENSIPUP00000017069	290 (aa)	XP_017325829	A0A2D0R5I3

Gene Model

Click here to download ENSIPUG00000011591's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011591's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011591	cmss1	100	48.288	ENSG00000184220	CMSS1	98	60.000	Homo_sapiens
ENSIPUG00000011591	cmss1	70	74.384	ENSAPOG00000010604	cmss1	97	66.260	Acanthochromis_polyacanthus
ENSIPUG00000011591	cmss1	76	55.405	ENSAMEG00000004092	CMSS1	86	55.405	Ailuropoda_melanoleuca
ENSIPUG00000011591	cmss1	70	63.547	ENSACIG00000021854	cmss1	94	59.200	Amphilophus_citrinellus
ENSIPUG00000011591	cmss1	100	62.759	ENSAOCG00000013361	cmss1	100	62.759	Amphiprion_ocellaris
ENSIPUG00000011591	cmss1	100	61.565	ENSAPEG00000005829	cmss1	100	62.199	Amphiprion_percula
ENSIPUG00000011591	cmss1	100	61.724	ENSATEG00000008209	cmss1	100	63.574	Anabas_testudineus
ENSIPUG00000011591	cmss1	77	59.641	ENSAPLG00000010542	CMSS1	97	59.641	Anas_platyrhynchos
ENSIPUG00000011591	cmss1	94	52.899	ENSACAG00000011065	CMSS1	96	52.364	Anolis_carolinensis
ENSIPUG00000011591	cmss1	100	47.260	ENSANAG00000023565	CMSS1	100	46.959	Aotus_nancymaae
ENSIPUG00000011591	cmss1	100	59.727	ENSACLG00000027294	cmss1	100	62.116	Astatotilapia_calliptera
ENSIPUG00000011591	cmss1	100	68.707	ENSAMXG00000002046	cmss1	100	70.748	Astyanax_mexicanus
ENSIPUG00000011591	cmss1	100	46.075	ENSBTAG00000013663	CMSS1	100	48.475	Bos_taurus
ENSIPUG00000011591	cmss1	100	49.662	ENSCJAG00000000610	CMSS1	100	49.662	Callithrix_jacchus
ENSIPUG00000011591	cmss1	76	56.364	ENSCAFG00000009230	CMSS1	80	56.364	Canis_familiaris
ENSIPUG00000011591	cmss1	90	51.515	ENSCAFG00020009464	-	80	56.364	Canis_lupus_dingo
ENSIPUG00000011591	cmss1	67	59.067	ENSCAFG00020024156	-	61	59.067	Canis_lupus_dingo
ENSIPUG00000011591	cmss1	76	55.204	ENSCHIG00000013003	CMSS1	80	55.204	Capra_hircus
ENSIPUG00000011591	cmss1	76	54.751	ENSTSYG00000009266	CMSS1	85	54.751	Carlito_syrichta
ENSIPUG00000011591	cmss1	76	45.575	ENSCAPG00000013584	CMSS1	88	48.969	Cavia_aperea
ENSIPUG00000011591	cmss1	100	48.980	ENSCPOG00000014680	CMSS1	100	47.931	Cavia_porcellus
ENSIPUG00000011591	cmss1	100	48.649	ENSCCAG00000034685	CMSS1	100	48.986	Cebus_capucinus
ENSIPUG00000011591	cmss1	100	47.931	ENSCATG00000031980	CMSS1	100	47.931	Cercocebus_atys
ENSIPUG00000011591	cmss1	76	56.109	ENSCLAG00000011241	CMSS1	95	56.109	Chinchilla_lanigera
ENSIPUG00000011591	cmss1	76	55.204	ENSCSAG00000006024	CMSS1	90	55.204	Chlorocebus_sabaeus
ENSIPUG00000011591	cmss1	100	36.552	ENSCHOG00000012098	CMSS1	100	36.552	Choloepus_hoffmanni
ENSIPUG00000011591	cmss1	65	40.838	ENSCING00000014848	-	99	40.642	Ciona_intestinalis
ENSIPUG00000011591	cmss1	100	48.464	ENSCANG00000031337	CMSS1	100	47.586	Colobus_angolensis_palliatus
ENSIPUG00000011591	cmss1	100	48.299	ENSCGRG00001014305	Cmss1	100	47.959	Cricetulus_griseus_chok1gshd
ENSIPUG00000011591	cmss1	77	54.955	ENSCGRG00000006722	Cmss1	86	54.955	Cricetulus_griseus_crigri
ENSIPUG00000011591	cmss1	100	56.187	ENSCSEG00000004958	cmss1	100	56.146	Cynoglossus_semilaevis
ENSIPUG00000011591	cmss1	100	58.108	ENSCVAG00000005039	cmss1	100	58.763	Cyprinodon_variegatus
ENSIPUG00000011591	cmss1	100	64.164	ENSDARG00000112579	cmss1	100	65.188	Danio_rerio
ENSIPUG00000011591	cmss1	76	55.204	ENSDNOG00000040418	CMSS1	80	55.204	Dasypus_novemcinctus
ENSIPUG00000011591	cmss1	100	49.655	ENSDORG00000010461	Cmss1	100	48.276	Dipodomys_ordii
ENSIPUG00000011591	cmss1	76	55.251	ENSEASG00005010966	CMSS1	99	55.251	Equus_asinus_asinus
ENSIPUG00000011591	cmss1	76	55.000	ENSECAG00000015662	CMSS1	97	54.751	Equus_caballus
ENSIPUG00000011591	cmss1	69	39.500	ENSEEUG00000007624	-	100	32.759	Erinaceus_europaeus
ENSIPUG00000011591	cmss1	100	60.265	ENSELUG00000019459	cmss1	100	59.667	Esox_lucius
ENSIPUG00000011591	cmss1	100	49.315	ENSFCAG00000044577	CMSS1	100	48.966	Felis_catus
ENSIPUG00000011591	cmss1	76	60.181	ENSFALG00000005816	CMSS1	93	60.181	Ficedula_albicollis
ENSIPUG00000011591	cmss1	76	56.364	ENSFDAG00000012577	CMSS1	96	56.364	Fukomys_damarensis
ENSIPUG00000011591	cmss1	81	64.103	ENSFHEG00000012008	cmss1	96	64.103	Fundulus_heteroclitus
ENSIPUG00000011591	cmss1	99	59.932	ENSGMOG00000016729	cmss1	100	60.900	Gadus_morhua
ENSIPUG00000011591	cmss1	92	54.815	ENSGALG00000015267	CMSS1	93	57.317	Gallus_gallus
ENSIPUG00000011591	cmss1	71	70.531	ENSGAFG00000021217	cmss1	77	69.951	Gambusia_affinis
ENSIPUG00000011591	cmss1	99	59.028	ENSGACG00000002798	cmss1	100	57.338	Gasterosteus_aculeatus
ENSIPUG00000011591	cmss1	90	53.992	ENSGAGG00000019861	CMSS1	86	60.000	Gopherus_agassizii
ENSIPUG00000011591	cmss1	76	55.204	ENSGGOG00000014125	CMSS1	85	55.204	Gorilla_gorilla
ENSIPUG00000011591	cmss1	100	60.751	ENSHBUG00000008431	cmss1	100	61.644	Haplochromis_burtoni
ENSIPUG00000011591	cmss1	76	57.014	ENSHGLG00000019481	CMSS1	90	57.014	Heterocephalus_glaber_female
ENSIPUG00000011591	cmss1	76	57.014	ENSHGLG00100010314	CMSS1	89	57.014	Heterocephalus_glaber_male
ENSIPUG00000011591	cmss1	100	57.718	ENSHCOG00000003222	cmss1	100	57.095	Hippocampus_comes
ENSIPUG00000011591	cmss1	100	48.966	ENSSTOG00000019366	CMSS1	100	49.147	Ictidomys_tridecemlineatus
ENSIPUG00000011591	cmss1	100	48.973	ENSJJAG00000014894	Cmss1	100	48.966	Jaculus_jaculus
ENSIPUG00000011591	cmss1	77	57.613	ENSKMAG00000002390	cmss1	96	58.506	Kryptolebias_marmoratus
ENSIPUG00000011591	cmss1	70	68.627	ENSLBEG00000006298	cmss1	93	62.343	Labrus_bergylta
ENSIPUG00000011591	cmss1	70	62.376	ENSLACG00000009293	CMSS1	88	62.376	Latimeria_chalumnae
ENSIPUG00000011591	cmss1	100	56.207	ENSLOCG00000009391	cmss1	100	56.207	Lepisosteus_oculatus
ENSIPUG00000011591	cmss1	76	56.818	ENSLAFG00000017509	CMSS1	96	56.818	Loxodonta_africana
ENSIPUG00000011591	cmss1	100	47.945	ENSMFAG00000045006	CMSS1	100	47.586	Macaca_fascicularis
ENSIPUG00000011591	cmss1	100	47.603	ENSMMUG00000002939	CMSS1	94	55.450	Macaca_mulatta
ENSIPUG00000011591	cmss1	100	47.945	ENSMNEG00000031315	CMSS1	100	47.586	Macaca_nemestrina
ENSIPUG00000011591	cmss1	100	48.630	ENSMLEG00000033660	CMSS1	100	48.276	Mandrillus_leucophaeus
ENSIPUG00000011591	cmss1	100	64.948	ENSMAMG00000017176	cmss1	100	66.323	Mastacembelus_armatus
ENSIPUG00000011591	cmss1	100	59.727	ENSMZEG00005021886	cmss1	100	62.116	Maylandia_zebra
ENSIPUG00000011591	cmss1	70	61.386	ENSMGAG00000014360	CMSS1	89	61.386	Meleagris_gallopavo
ENSIPUG00000011591	cmss1	100	33.887	ENSMAUG00000020609	Cmss1	100	34.237	Mesocricetus_auratus
ENSIPUG00000011591	cmss1	100	50.000	ENSMICG00000048977	CMSS1	100	48.829	Microcebus_murinus
ENSIPUG00000011591	cmss1	100	48.276	ENSMOCG00000021937	Cmss1	100	48.299	Microtus_ochrogaster
ENSIPUG00000011591	cmss1	70	70.936	ENSMMOG00000019794	cmss1	94	63.445	Mola_mola
ENSIPUG00000011591	cmss1	90	53.053	ENSMODG00000002275	CMSS1	83	57.534	Monodelphis_domestica
ENSIPUG00000011591	cmss1	100	62.712	ENSMALG00000004250	cmss1	100	63.356	Monopterus_albus
ENSIPUG00000011591	cmss1	100	48.966	MGP_CAROLIEiJ_G0020824	Cmss1	100	49.320	Mus_caroli
ENSIPUG00000011591	cmss1	100	48.966	ENSMUSG00000022748	Cmss1	100	48.980	Mus_musculus
ENSIPUG00000011591	cmss1	100	47.826	MGP_PahariEiJ_G0016524	Cmss1	100	48.639	Mus_pahari
ENSIPUG00000011591	cmss1	100	48.621	MGP_SPRETEiJ_G0021724	Cmss1	100	48.639	Mus_spretus
ENSIPUG00000011591	cmss1	76	55.000	ENSMPUG00000011324	CMSS1	85	55.000	Mustela_putorius_furo
ENSIPUG00000011591	cmss1	83	52.869	ENSMLUG00000001131	CMSS1	85	54.464	Myotis_lucifugus
ENSIPUG00000011591	cmss1	100	49.153	ENSNGAG00000020316	Cmss1	100	48.475	Nannospalax_galili
ENSIPUG00000011591	cmss1	100	59.727	ENSNBRG00000003095	cmss1	100	62.457	Neolamprologus_brichardi
ENSIPUG00000011591	cmss1	100	48.630	ENSNLEG00000034172	CMSS1	100	48.276	Nomascus_leucogenys
ENSIPUG00000011591	cmss1	76	47.511	ENSMEUG00000014505	CMSS1	96	48.402	Notamacropus_eugenii
ENSIPUG00000011591	cmss1	100	50.685	ENSOPRG00000002986	CMSS1	100	49.320	Ochotona_princeps
ENSIPUG00000011591	cmss1	100	50.000	ENSODEG00000005226	-	100	50.685	Octodon_degus
ENSIPUG00000011591	cmss1	100	42.424	ENSODEG00000001853	-	100	42.809	Octodon_degus
ENSIPUG00000011591	cmss1	100	47.603	ENSODEG00000003558	-	100	46.918	Octodon_degus
ENSIPUG00000011591	cmss1	100	40.000	ENSODEG00000009446	-	100	39.655	Octodon_degus
ENSIPUG00000011591	cmss1	70	70.936	ENSONIG00000006678	cmss1	95	66.000	Oreochromis_niloticus
ENSIPUG00000011591	cmss1	76	57.014	ENSOANG00000007529	CMSS1	97	56.444	Ornithorhynchus_anatinus
ENSIPUG00000011591	cmss1	77	56.306	ENSOCUG00000025366	CMSS1	80	56.306	Oryctolagus_cuniculus
ENSIPUG00000011591	cmss1	100	62.069	ENSORLG00000020340	cmss1	100	61.224	Oryzias_latipes
ENSIPUG00000011591	cmss1	78	59.111	ENSORLG00020012235	cmss1	99	57.759	Oryzias_latipes_hni
ENSIPUG00000011591	cmss1	90	56.274	ENSORLG00015015551	cmss1	76	63.054	Oryzias_latipes_hsok
ENSIPUG00000011591	cmss1	100	59.932	ENSOMEG00000012555	cmss1	100	60.616	Oryzias_melastigma
ENSIPUG00000011591	cmss1	76	56.364	ENSOGAG00000002045	CMSS1	96	56.364	Otolemur_garnettii
ENSIPUG00000011591	cmss1	76	54.955	ENSOARG00000017899	CMSS1	76	54.955	Ovis_aries
ENSIPUG00000011591	cmss1	76	55.204	ENSPPAG00000038515	CMSS1	81	55.204	Pan_paniscus
ENSIPUG00000011591	cmss1	100	49.315	ENSPPRG00000016767	CMSS1	100	48.966	Panthera_pardus
ENSIPUG00000011591	cmss1	100	48.973	ENSPTIG00000018274	CMSS1	100	48.621	Panthera_tigris_altaica
ENSIPUG00000011591	cmss1	100	48.630	ENSPTRG00000015157	CMSS1	100	47.157	Pan_troglodytes
ENSIPUG00000011591	cmss1	76	55.204	ENSPANG00000019980	CMSS1	88	55.204	Papio_anubis
ENSIPUG00000011591	cmss1	93	63.469	ENSPKIG00000012609	cmss1	97	62.406	Paramormyrops_kingsleyae
ENSIPUG00000011591	cmss1	76	60.909	ENSPSIG00000003849	CMSS1	96	60.909	Pelodiscus_sinensis
ENSIPUG00000011591	cmss1	70	71.078	ENSPMGG00000010286	cmss1	88	71.078	Periophthalmus_magnuspinnatus
ENSIPUG00000011591	cmss1	100	49.655	ENSPEMG00000016384	Cmss1	100	48.276	Peromyscus_maniculatus_bairdii
ENSIPUG00000011591	cmss1	70	50.980	ENSPMAG00000001146	cmss1	99	51.232	Petromyzon_marinus
ENSIPUG00000011591	cmss1	70	57.426	ENSPCIG00000015656	CMSS1	77	57.426	Phascolarctos_cinereus
ENSIPUG00000011591	cmss1	100	58.562	ENSPFOG00000016849	cmss1	100	59.044	Poecilia_formosa
ENSIPUG00000011591	cmss1	100	58.219	ENSPLAG00000008323	cmss1	100	58.703	Poecilia_latipinna
ENSIPUG00000011591	cmss1	100	58.904	ENSPMEG00000021020	cmss1	100	59.396	Poecilia_mexicana
ENSIPUG00000011591	cmss1	90	60.920	ENSPREG00000007618	cmss1	85	62.400	Poecilia_reticulata
ENSIPUG00000011591	cmss1	100	48.311	ENSPPYG00000013606	CMSS1	100	48.276	Pongo_abelii
ENSIPUG00000011591	cmss1	100	49.324	ENSPCOG00000020035	CMSS1	100	48.980	Propithecus_coquereli
ENSIPUG00000011591	cmss1	100	43.003	ENSPVAG00000017031	CMSS1	100	41.724	Pteropus_vampyrus
ENSIPUG00000011591	cmss1	91	61.423	ENSPNYG00000013428	cmss1	97	64.045	Pundamilia_nyererei
ENSIPUG00000011591	cmss1	100	70.068	ENSPNAG00000007912	cmss1	100	70.068	Pygocentrus_nattereri
ENSIPUG00000011591	cmss1	70	56.931	ENSRNOG00000027888	Cmss1	79	56.931	Rattus_norvegicus
ENSIPUG00000011591	cmss1	100	47.945	ENSRBIG00000037931	CMSS1	100	47.931	Rhinopithecus_bieti
ENSIPUG00000011591	cmss1	100	47.945	ENSRROG00000042910	CMSS1	100	47.931	Rhinopithecus_roxellana
ENSIPUG00000011591	cmss1	83	52.479	ENSSBOG00000030980	CMSS1	91	52.479	Saimiri_boliviensis_boliviensis
ENSIPUG00000011591	cmss1	70	57.921	ENSSHAG00000009321	CMSS1	87	57.078	Sarcophilus_harrisii
ENSIPUG00000011591	cmss1	100	61.224	ENSSFOG00015001509	cmss1	100	61.301	Scleropages_formosus
ENSIPUG00000011591	cmss1	100	61.168	ENSSMAG00000001653	cmss1	100	60.825	Scophthalmus_maximus
ENSIPUG00000011591	cmss1	100	62.414	ENSSDUG00000007719	cmss1	100	65.172	Seriola_dumerili
ENSIPUG00000011591	cmss1	71	73.430	ENSSLDG00000012300	cmss1	99	58.503	Seriola_lalandi_dorsalis
ENSIPUG00000011591	cmss1	100	40.136	ENSSARG00000003584	CMSS1	100	40.690	Sorex_araneus
ENSIPUG00000011591	cmss1	76	59.545	ENSSPUG00000003865	CMSS1	98	59.276	Sphenodon_punctatus
ENSIPUG00000011591	cmss1	90	63.218	ENSSPAG00000019182	cmss1	74	64.940	Stegastes_partitus
ENSIPUG00000011591	cmss1	100	47.603	ENSSSCG00000011970	CMSS1	100	47.119	Sus_scrofa
ENSIPUG00000011591	cmss1	77	59.459	ENSTGUG00000013635	CMSS1	97	59.459	Taeniopygia_guttata
ENSIPUG00000011591	cmss1	100	60.068	ENSTRUG00000015265	cmss1	100	57.931	Takifugu_rubripes
ENSIPUG00000011591	cmss1	70	66.010	ENSTNIG00000002880	cmss1	99	55.714	Tetraodon_nigroviridis
ENSIPUG00000011591	cmss1	76	38.914	ENSTBEG00000016722	CMSS1	79	38.914	Tupaia_belangeri
ENSIPUG00000011591	cmss1	100	47.766	ENSTTRG00000001562	CMSS1	100	47.241	Tursiops_truncatus
ENSIPUG00000011591	cmss1	76	56.109	ENSUAMG00000024209	CMSS1	99	56.109	Ursus_americanus
ENSIPUG00000011591	cmss1	76	55.656	ENSUMAG00000001983	CMSS1	85	55.656	Ursus_maritimus
ENSIPUG00000011591	cmss1	55	56.250	ENSVPAG00000000263	CMSS1	57	56.250	Vicugna_pacos
ENSIPUG00000011591	cmss1	76	56.818	ENSVVUG00000021647	-	89	56.818	Vulpes_vulpes
ENSIPUG00000011591	cmss1	70	56.436	ENSVVUG00000007776	-	80	56.436	Vulpes_vulpes
ENSIPUG00000011591	cmss1	100	52.577	ENSXETG00000011858	cmss1	100	52.759	Xenopus_tropicalis
ENSIPUG00000011591	cmss1	95	59.498	ENSXCOG00000018724	cmss1	70	69.951	Xiphophorus_couchianus
ENSIPUG00000011591	cmss1	90	61.364	ENSXMAG00000011243	cmss1	76	69.951	Xiphophorus_maculatus