EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000011746 (Gene tree)
Gene ID: 108276766
Gene Symbol: rnps1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 11100 bases
Position: chr2:17474859-17485958
Accession: 108276766
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000017329	RRM_1	PF00076.22	8.1e-19	1	1
ENSIPUP00000017304	RRM_1	PF00076.22	9.7e-19	1	1
ENSIPUP00000017314	RRM_1	PF00076.22	1.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000018051	-	4598	-	ENSIPUP00000017314	306 (aa)	-	-
ENSIPUT00000018068	-	780	-	ENSIPUP00000017329	259 (aa)	-	-
ENSIPUT00000018041	-	4595	XM_017488687	ENSIPUP00000017304	285 (aa)	XP_017344176	A0A2D0SNV6

Gene Model

Click here to download ENSIPUG00000011746's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000011746's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000011746	rnps1	93	78.423	ENSG00000205937	RNPS1	86	78.231	Homo_sapiens
ENSIPUG00000011746	rnps1	93	54.772	ENSAPLG00000006231	RNPS1	59	82.906	Anas_platyrhynchos
ENSIPUG00000011746	rnps1	93	78.008	ENSANAG00000028802	RNPS1	55	81.197	Aotus_nancymaae
ENSIPUG00000011746	rnps1	91	62.288	ENSACLG00000021537	-	90	60.408	Astatotilapia_calliptera
ENSIPUG00000011746	rnps1	91	85.000	ENSAMXG00000037447	RNPS1	73	83.613	Astyanax_mexicanus
ENSIPUG00000011746	rnps1	93	78.423	ENSCJAG00000014969	RNPS1	55	81.197	Callithrix_jacchus
ENSIPUG00000011746	rnps1	93	78.423	ENSTSYG00000001629	RNPS1	55	81.197	Carlito_syrichta
ENSIPUG00000011746	rnps1	93	78.008	ENSCCAG00000034480	RNPS1	55	80.342	Cebus_capucinus
ENSIPUG00000011746	rnps1	93	78.423	ENSCATG00000013756	RNPS1	55	81.197	Cercocebus_atys
ENSIPUG00000011746	rnps1	99	73.256	ENSCATG00000042361	-	77	69.124	Cercocebus_atys
ENSIPUG00000011746	rnps1	93	78.423	ENSCANG00000041307	RNPS1	55	81.197	Colobus_angolensis_palliatus
ENSIPUG00000011746	rnps1	85	74.208	ENSCVAG00000010868	RNPS1	77	71.041	Cyprinodon_variegatus
ENSIPUG00000011746	rnps1	76	56.853	ENSDNOG00000038751	-	97	57.143	Dasypus_novemcinctus
ENSIPUG00000011746	rnps1	93	78.008	ENSFCAG00000007690	RNPS1	55	81.197	Felis_catus
ENSIPUG00000011746	rnps1	85	71.946	ENSFHEG00000011705	RNPS1	77	73.303	Fundulus_heteroclitus
ENSIPUG00000011746	rnps1	85	69.683	ENSGAFG00000005457	RNPS1	77	68.326	Gambusia_affinis
ENSIPUG00000011746	rnps1	93	78.423	ENSGGOG00000014275	RNPS1	55	81.197	Gorilla_gorilla
ENSIPUG00000011746	rnps1	91	62.288	ENSHBUG00000017337	-	82	62.288	Haplochromis_burtoni
ENSIPUG00000011746	rnps1	52	76.866	ENSJJAG00000000532	-	57	77.778	Jaculus_jaculus
ENSIPUG00000011746	rnps1	93	78.423	ENSMFAG00000042142	RNPS1	55	81.197	Macaca_fascicularis
ENSIPUG00000011746	rnps1	79	77.941	ENSMMUG00000019238	-	55	81.197	Macaca_mulatta
ENSIPUG00000011746	rnps1	93	78.423	ENSMLEG00000036928	RNPS1	55	81.197	Mandrillus_leucophaeus
ENSIPUG00000011746	rnps1	91	71.610	ENSMAMG00000021148	-	81	61.702	Mastacembelus_armatus
ENSIPUG00000011746	rnps1	91	75.847	ENSMAMG00000021609	-	69	75.490	Mastacembelus_armatus
ENSIPUG00000011746	rnps1	91	62.447	ENSMZEG00005006256	-	83	62.288	Maylandia_zebra
ENSIPUG00000011746	rnps1	93	78.423	ENSMICG00000031543	RNPS1	55	81.197	Microcebus_murinus
ENSIPUG00000011746	rnps1	93	65.975	ENSMODG00000015891	RNPS1	79	64.315	Monodelphis_domestica
ENSIPUG00000011746	rnps1	91	62.447	ENSNBRG00000014540	-	85	62.288	Neolamprologus_brichardi
ENSIPUG00000011746	rnps1	97	76.800	ENSNLEG00000009243	RNPS1	68	76.860	Nomascus_leucogenys
ENSIPUG00000011746	rnps1	84	78.333	ENSOPRG00000016422	RNPS1	70	79.167	Ochotona_princeps
ENSIPUG00000011746	rnps1	91	62.447	ENSONIG00000019627	-	83	62.288	Oreochromis_niloticus
ENSIPUG00000011746	rnps1	91	66.949	ENSORLG00000008033	RNPS1	94	68.116	Oryzias_latipes
ENSIPUG00000011746	rnps1	96	74.194	ENSPPAG00000011845	RNPS1	81	74.194	Pan_paniscus
ENSIPUG00000011746	rnps1	93	78.008	ENSPPRG00000011255	RNPS1	55	81.197	Panthera_pardus
ENSIPUG00000011746	rnps1	56	73.793	ENSPTIG00000015643	RNPS1	62	81.197	Panthera_tigris_altaica
ENSIPUG00000011746	rnps1	93	78.423	ENSPTRG00000031310	RNPS1	55	81.197	Pan_troglodytes
ENSIPUG00000011746	rnps1	93	78.423	ENSPANG00000015748	RNPS1	55	81.197	Papio_anubis
ENSIPUG00000011746	rnps1	91	78.390	ENSPKIG00000023465	RNPS1	83	78.390	Paramormyrops_kingsleyae
ENSIPUG00000011746	rnps1	56	75.862	ENSPCIG00000016114	-	57	80.342	Phascolarctos_cinereus
ENSIPUG00000011746	rnps1	85	70.588	ENSPFOG00000009978	RNPS1	77	69.231	Poecilia_formosa
ENSIPUG00000011746	rnps1	85	70.588	ENSPLAG00000009343	RNPS1	77	69.231	Poecilia_latipinna
ENSIPUG00000011746	rnps1	85	70.588	ENSPMEG00000008552	RNPS1	77	69.231	Poecilia_mexicana
ENSIPUG00000011746	rnps1	85	70.588	ENSPREG00000001843	RNPS1	77	69.231	Poecilia_reticulata
ENSIPUG00000011746	rnps1	93	78.423	ENSPCOG00000005478	RNPS1	55	81.197	Propithecus_coquereli
ENSIPUG00000011746	rnps1	91	81.933	ENSPNAG00000017784	-	83	83.613	Pygocentrus_nattereri
ENSIPUG00000011746	rnps1	93	78.423	ENSRROG00000041252	RNPS1	55	81.197	Rhinopithecus_roxellana
ENSIPUG00000011746	rnps1	93	78.423	ENSSBOG00000027927	RNPS1	55	81.197	Saimiri_boliviensis_boliviensis
ENSIPUG00000011746	rnps1	91	72.766	ENSSFOG00015019341	-	76	59.600	Scleropages_formosus
ENSIPUG00000011746	rnps1	87	70.354	ENSSLDG00000021341	RNPS1	76	72.549	Seriola_lalandi_dorsalis
ENSIPUG00000011746	rnps1	91	73.729	ENSTRUG00000008602	RNPS1	83	73.729	Takifugu_rubripes
ENSIPUG00000011746	rnps1	91	75.745	ENSTNIG00000009753	RNPS1	81	75.847	Tetraodon_nigroviridis
ENSIPUG00000011746	rnps1	88	67.391	ENSXETG00000024439	rnps1	71	68.349	Xenopus_tropicalis