EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000012138 (Gene tree)
Gene ID: 108270112
Gene Symbol: larp1b
Alias: fc76b04|wu:fc76b04
Full Name: la-related protein 1B-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 53176 bases
Position: chr9:24659062-24712237
Accession: 108270112
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000017965	La	PF05383.17	1.4e-19	1	1
ENSIPUP00000017926	La	PF05383.17	1.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000018731	-	3189	-	ENSIPUP00000017965	1062 (aa)	-	-
ENSIPUT00000018688	-	3839	XM_017476452	ENSIPUP00000017926	1083 (aa)	XP_017331941	A0A2D0RP52

Gene Model

Click here to download ENSIPUG00000012138's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012138's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000012138	larp1b	85	52.228	ENSIPUG00000019105	Larp1	95	52.298

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012138	larp1b	85	53.800	ENSG00000138709	LARP1B	100	51.133	Homo_sapiens
ENSIPUG00000012138	larp1b	89	64.220	ENSAPOG00000020101	larp1b	95	64.824	Acanthochromis_polyacanthus
ENSIPUG00000012138	larp1b	93	61.709	ENSACIG00000023890	larp1b	99	60.284	Amphilophus_citrinellus
ENSIPUG00000012138	larp1b	81	62.942	ENSAOCG00000014268	larp1b	94	63.564	Amphiprion_ocellaris
ENSIPUG00000012138	larp1b	89	65.696	ENSAPEG00000004126	larp1b	96	64.020	Amphiprion_percula
ENSIPUG00000012138	larp1b	88	63.560	ENSATEG00000017849	larp1b	94	62.948	Anabas_testudineus
ENSIPUG00000012138	larp1b	76	58.643	ENSAPLG00000010129	LARP1B	83	58.651	Anas_platyrhynchos
ENSIPUG00000012138	larp1b	81	55.474	ENSACAG00000011338	LARP1B	74	62.963	Anolis_carolinensis
ENSIPUG00000012138	larp1b	60	54.136	ENSANAG00000034618	LARP1B	77	55.053	Aotus_nancymaae
ENSIPUG00000012138	larp1b	86	61.015	ENSACLG00000011948	larp1b	72	65.796	Astatotilapia_calliptera
ENSIPUG00000012138	larp1b	94	72.249	ENSAMXG00000006805	larp1b	96	72.374	Astyanax_mexicanus
ENSIPUG00000012138	larp1b	83	55.337	ENSBTAG00000012135	LARP1B	86	53.649	Bos_taurus
ENSIPUG00000012138	larp1b	80	55.135	ENSCJAG00000003338	LARP1B	85	61.662	Callithrix_jacchus
ENSIPUG00000012138	larp1b	80	60.484	ENSCAFG00000003831	LARP1B	99	59.793	Canis_familiaris
ENSIPUG00000012138	larp1b	81	56.564	ENSCAFG00020018899	LARP1B	98	54.027	Canis_lupus_dingo
ENSIPUG00000012138	larp1b	81	55.357	ENSCHIG00000023144	LARP1B	98	55.219	Capra_hircus
ENSIPUG00000012138	larp1b	80	54.963	ENSCCAG00000021948	LARP1B	86	59.345	Cebus_capucinus
ENSIPUG00000012138	larp1b	80	54.487	ENSCATG00000013541	LARP1B	87	58.263	Cercocebus_atys
ENSIPUG00000012138	larp1b	80	55.059	ENSCSAG00000003582	LARP1B	87	58.703	Chlorocebus_sabaeus
ENSIPUG00000012138	larp1b	82	51.829	ENSCHOG00000005354	LARP1B	85	57.125	Choloepus_hoffmanni
ENSIPUG00000012138	larp1b	89	54.581	ENSCPBG00000017480	LARP1B	91	55.215	Chrysemys_picta_bellii
ENSIPUG00000012138	larp1b	80	56.100	ENSCANG00000026958	LARP1B	100	55.069	Colobus_angolensis_palliatus
ENSIPUG00000012138	larp1b	82	60.146	ENSCSEG00000013519	larp1b	71	68.107	Cynoglossus_semilaevis
ENSIPUG00000012138	larp1b	87	61.404	ENSCVAG00000005046	larp1b	93	61.249	Cyprinodon_variegatus
ENSIPUG00000012138	larp1b	99	69.927	ENSDARG00000061169	larp1b	99	70.018	Danio_rerio
ENSIPUG00000012138	larp1b	64	53.463	ENSETEG00000012497	LARP1B	75	53.047	Echinops_telfairi
ENSIPUG00000012138	larp1b	86	44.142	ENSEBUG00000003668	larp1b	95	44.697	Eptatretus_burgeri
ENSIPUG00000012138	larp1b	80	56.803	ENSEASG00005018106	LARP1B	98	54.362	Equus_asinus_asinus
ENSIPUG00000012138	larp1b	86	54.774	ENSECAG00000001088	LARP1B	85	54.610	Equus_caballus
ENSIPUG00000012138	larp1b	75	61.850	ENSELUG00000023774	larp1b	99	55.752	Esox_lucius
ENSIPUG00000012138	larp1b	81	52.798	ENSFALG00000008098	LARP1B	84	57.654	Ficedula_albicollis
ENSIPUG00000012138	larp1b	95	61.397	ENSFHEG00000010264	larp1b	89	68.455	Fundulus_heteroclitus
ENSIPUG00000012138	larp1b	81	68.153	ENSGMOG00000005207	larp1b	78	69.256	Gadus_morhua
ENSIPUG00000012138	larp1b	85	53.462	ENSGALG00000010207	LARP1B	73	59.487	Gallus_gallus
ENSIPUG00000012138	larp1b	83	69.018	ENSGAFG00000012012	larp1b	93	68.309	Gambusia_affinis
ENSIPUG00000012138	larp1b	69	62.549	ENSGACG00000004609	larp1b	73	62.149	Gasterosteus_aculeatus
ENSIPUG00000012138	larp1b	89	55.828	ENSGAGG00000017209	LARP1B	93	54.195	Gopherus_agassizii
ENSIPUG00000012138	larp1b	80	54.691	ENSGGOG00000015900	LARP1B	86	58.959	Gorilla_gorilla
ENSIPUG00000012138	larp1b	87	64.468	ENSHBUG00000009730	larp1b	94	62.915	Haplochromis_burtoni
ENSIPUG00000012138	larp1b	65	67.614	ENSHCOG00000000918	larp1b	97	68.608	Hippocampus_comes
ENSIPUG00000012138	larp1b	85	63.898	ENSKMAG00000011589	larp1b	94	64.249	Kryptolebias_marmoratus
ENSIPUG00000012138	larp1b	88	64.916	ENSLBEG00000005655	larp1b	93	63.395	Labrus_bergylta
ENSIPUG00000012138	larp1b	90	57.018	ENSLACG00000015247	LARP1B	91	57.352	Latimeria_chalumnae
ENSIPUG00000012138	larp1b	80	66.102	ENSLOCG00000010684	larp1b	87	66.102	Lepisosteus_oculatus
ENSIPUG00000012138	larp1b	80	55.128	ENSMFAG00000002218	LARP1B	87	59.036	Macaca_fascicularis
ENSIPUG00000012138	larp1b	80	55.235	ENSMMUG00000021347	LARP1B	87	59.277	Macaca_mulatta
ENSIPUG00000012138	larp1b	80	53.027	ENSMNEG00000030406	LARP1B	83	59.422	Macaca_nemestrina
ENSIPUG00000012138	larp1b	80	55.819	ENSMLEG00000009306	LARP1B	100	54.536	Mandrillus_leucophaeus
ENSIPUG00000012138	larp1b	97	61.759	ENSMAMG00000000081	larp1b	99	63.178	Mastacembelus_armatus
ENSIPUG00000012138	larp1b	65	68.902	ENSMZEG00005002545	larp1b	99	65.337	Maylandia_zebra
ENSIPUG00000012138	larp1b	68	56.407	ENSMGAG00000004809	LARP1B	81	56.383	Meleagris_gallopavo
ENSIPUG00000012138	larp1b	81	56.317	ENSMICG00000036111	LARP1B	87	60.832	Microcebus_murinus
ENSIPUG00000012138	larp1b	88	52.223	ENSMODG00000012300	LARP1B	90	50.926	Monodelphis_domestica
ENSIPUG00000012138	larp1b	90	65.253	ENSMALG00000003638	larp1b	93	65.155	Monopterus_albus
ENSIPUG00000012138	larp1b	83	55.579	ENSMPUG00000017365	LARP1B	86	54.555	Mustela_putorius_furo
ENSIPUG00000012138	larp1b	81	55.136	ENSMLUG00000010229	LARP1B	82	61.499	Myotis_lucifugus
ENSIPUG00000012138	larp1b	80	64.085	ENSNBRG00000023846	larp1b	93	61.021	Neolamprologus_brichardi
ENSIPUG00000012138	larp1b	80	54.633	ENSNLEG00000013819	LARP1B	86	59.008	Nomascus_leucogenys
ENSIPUG00000012138	larp1b	64	56.510	ENSMEUG00000010308	LARP1B	77	56.233	Notamacropus_eugenii
ENSIPUG00000012138	larp1b	64	63.134	ENSOPRG00000005478	LARP1B	86	52.941	Ochotona_princeps
ENSIPUG00000012138	larp1b	84	58.342	ENSONIG00000012386	larp1b	79	66.369	Oreochromis_niloticus
ENSIPUG00000012138	larp1b	80	54.388	ENSOCUG00000013330	LARP1B	85	59.241	Oryctolagus_cuniculus
ENSIPUG00000012138	larp1b	88	61.216	ENSORLG00000017954	larp1b	94	61.678	Oryzias_latipes
ENSIPUG00000012138	larp1b	88	56.634	ENSORLG00020013081	larp1b	72	65.923	Oryzias_latipes_hni
ENSIPUG00000012138	larp1b	87	62.171	ENSORLG00015009580	larp1b	94	61.756	Oryzias_latipes_hsok
ENSIPUG00000012138	larp1b	87	63.646	ENSOMEG00000004210	larp1b	94	62.576	Oryzias_melastigma
ENSIPUG00000012138	larp1b	80	56.972	ENSOGAG00000005771	LARP1B	100	56.223	Otolemur_garnettii
ENSIPUG00000012138	larp1b	81	54.774	ENSOARG00000015300	LARP1B	100	53.798	Ovis_aries
ENSIPUG00000012138	larp1b	80	54.797	ENSPPAG00000030439	LARP1B	86	59.080	Pan_paniscus
ENSIPUG00000012138	larp1b	80	54.797	ENSPTRG00000016437	LARP1B	86	59.080	Pan_troglodytes
ENSIPUG00000012138	larp1b	80	55.128	ENSPANG00000012488	LARP1B	87	59.157	Papio_anubis
ENSIPUG00000012138	larp1b	83	54.545	ENSPKIG00000014360	larp1b	94	54.276	Paramormyrops_kingsleyae
ENSIPUG00000012138	larp1b	83	56.726	ENSPSIG00000012885	LARP1B	99	55.996	Pelodiscus_sinensis
ENSIPUG00000012138	larp1b	67	68.942	ENSPMGG00000007207	larp1b	89	68.270	Periophthalmus_magnuspinnatus
ENSIPUG00000012138	larp1b	64	54.459	ENSPMAG00000002700	larp1b	86	50.932	Petromyzon_marinus
ENSIPUG00000012138	larp1b	83	54.256	ENSPCIG00000026516	LARP1B	99	59.073	Phascolarctos_cinereus
ENSIPUG00000012138	larp1b	98	64.762	ENSPFOG00000019519	larp1b	93	66.422	Poecilia_formosa
ENSIPUG00000012138	larp1b	60	60.934	ENSPFOG00000022837	-	90	60.688	Poecilia_formosa
ENSIPUG00000012138	larp1b	98	57.371	ENSPLAG00000007115	larp1b	93	67.322	Poecilia_latipinna
ENSIPUG00000012138	larp1b	98	66.626	ENSPMEG00000001224	larp1b	93	68.514	Poecilia_mexicana
ENSIPUG00000012138	larp1b	74	57.794	ENSPCAG00000007546	LARP1B	87	58.243	Procavia_capensis
ENSIPUG00000012138	larp1b	71	59.859	ENSPCOG00000021874	LARP1B	85	47.286	Propithecus_coquereli
ENSIPUG00000012138	larp1b	80	52.603	ENSPVAG00000005373	LARP1B	84	57.942	Pteropus_vampyrus
ENSIPUG00000012138	larp1b	65	66.948	ENSPNYG00000017357	larp1b	99	63.748	Pundamilia_nyererei
ENSIPUG00000012138	larp1b	94	75.419	ENSPNAG00000008823	larp1b	97	75.791	Pygocentrus_nattereri
ENSIPUG00000012138	larp1b	80	54.915	ENSRROG00000030771	LARP1B	87	58.745	Rhinopithecus_roxellana
ENSIPUG00000012138	larp1b	58	49.642	ENSSHAG00000014474	LARP1B	99	49.148	Sarcophilus_harrisii
ENSIPUG00000012138	larp1b	81	69.241	ENSSMAG00000006347	larp1b	97	62.724	Scophthalmus_maximus
ENSIPUG00000012138	larp1b	93	62.761	ENSSDUG00000004182	larp1b	96	62.598	Seriola_dumerili
ENSIPUG00000012138	larp1b	87	75.833	ENSSLDG00000014613	larp1b	96	76.289	Seriola_lalandi_dorsalis
ENSIPUG00000012138	larp1b	75	58.065	ENSSPUG00000011837	LARP1B	84	57.867	Sphenodon_punctatus
ENSIPUG00000012138	larp1b	94	61.296	ENSSPAG00000017772	larp1b	99	60.606	Stegastes_partitus
ENSIPUG00000012138	larp1b	85	54.536	ENSSSCG00000034280	LARP1B	79	84.444	Sus_scrofa
ENSIPUG00000012138	larp1b	70	59.974	ENSTGUG00000002098	-	89	60.645	Taeniopygia_guttata
ENSIPUG00000012138	larp1b	88	62.222	ENSTRUG00000005612	larp1b	100	59.234	Takifugu_rubripes
ENSIPUG00000012138	larp1b	87	60.841	ENSTNIG00000012398	larp1b	98	63.538	Tetraodon_nigroviridis
ENSIPUG00000012138	larp1b	55	61.017	ENSTBEG00000004177	LARP1B	74	50.696	Tupaia_belangeri
ENSIPUG00000012138	larp1b	73	56.863	ENSTTRG00000012984	LARP1B	87	56.212	Tursiops_truncatus
ENSIPUG00000012138	larp1b	82	54.963	ENSUMAG00000007373	LARP1B	84	61.174	Ursus_maritimus
ENSIPUG00000012138	larp1b	63	67.568	ENSVPAG00000007223	LARP1B	74	67.568	Vicugna_pacos
ENSIPUG00000012138	larp1b	81	56.578	ENSVVUG00000011307	LARP1B	85	61.699	Vulpes_vulpes
ENSIPUG00000012138	larp1b	89	51.259	ENSXETG00000022512	larp1b	95	50.551	Xenopus_tropicalis
ENSIPUG00000012138	larp1b	85	63.061	ENSXCOG00000004435	larp1b	95	60.222	Xiphophorus_couchianus
ENSIPUG00000012138	larp1b	93	69.020	ENSXMAG00000008150	larp1b	92	68.474	Xiphophorus_maculatus