EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000012242 (Gene tree)
Gene ID: 108257328
Gene Symbol: Sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4734 bases
Position: chr24:19004396-19009129
Accession: 108257328
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018059	RRM_1	PF00076.22	3.3e-39	1	2
ENSIPUP00000018059	RRM_1	PF00076.22	3.3e-39	2	2
ENSIPUP00000018066	RRM_1	PF00076.22	3.5e-39	1	2
ENSIPUP00000018066	RRM_1	PF00076.22	3.5e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000018827	-	2168	XM_017454989	ENSIPUP00000018059	399 (aa)	XP_017310478	W5UKY2
ENSIPUT00000018835	-	1273	-	ENSIPUP00000018066	409 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000012242's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012242's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000012242	Sf3b4	57	34.444	ENSIPUG00000021244	-	53	36.612
ENSIPUG00000012242	Sf3b4	50	33.981	ENSIPUG00000016702	tia1	83	36.517

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012242	Sf3b4	77	81.250	ENSG00000143368	SF3B4	100	96.316	Homo_sapiens
ENSIPUG00000012242	Sf3b4	60	98.750	ENSAPOG00000017647	sf3b4	69	96.014	Acanthochromis_polyacanthus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSAMEG00000010073	SF3B4	57	96.667	Ailuropoda_melanoleuca
ENSIPUG00000012242	Sf3b4	58	97.835	ENSACIG00000018455	sf3b4	68	97.826	Amphilophus_citrinellus
ENSIPUG00000012242	Sf3b4	60	97.917	ENSAOCG00000019801	sf3b4	69	95.290	Amphiprion_ocellaris
ENSIPUG00000012242	Sf3b4	60	97.917	ENSAPEG00000010365	sf3b4	69	95.290	Amphiprion_percula
ENSIPUG00000012242	Sf3b4	60	98.750	ENSATEG00000012844	sf3b4	60	98.750	Anabas_testudineus
ENSIPUG00000012242	Sf3b4	54	100.000	ENSACAG00000010019	SF3B4	55	98.261	Anolis_carolinensis
ENSIPUG00000012242	Sf3b4	77	81.250	ENSANAG00000031025	SF3B4	57	96.667	Aotus_nancymaae
ENSIPUG00000012242	Sf3b4	67	95.522	ENSACLG00000014260	sf3b4	69	94.203	Astatotilapia_calliptera
ENSIPUG00000012242	Sf3b4	72	95.819	ENSAMXG00000008282	sf3b4	72	95.833	Astyanax_mexicanus
ENSIPUG00000012242	Sf3b4	54	94.860	ENSBTAG00000012793	-	53	94.860	Bos_taurus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSBTAG00000012495	SF3B4	57	96.667	Bos_taurus
ENSIPUG00000012242	Sf3b4	61	75.203	WBGene00004723	sap-49	54	81.991	Caenorhabditis_elegans
ENSIPUG00000012242	Sf3b4	77	79.688	ENSCAFG00000011617	SF3B4	57	96.667	Canis_familiaris
ENSIPUG00000012242	Sf3b4	77	79.688	ENSCAFG00020019775	SF3B4	57	96.667	Canis_lupus_dingo
ENSIPUG00000012242	Sf3b4	77	59.248	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSCHIG00000025663	-	57	96.667	Capra_hircus
ENSIPUG00000012242	Sf3b4	77	81.250	ENSTSYG00000009295	SF3B4	57	96.667	Carlito_syrichta
ENSIPUG00000012242	Sf3b4	77	80.000	ENSCPOG00000008267	SF3B4	57	96.667	Cavia_porcellus
ENSIPUG00000012242	Sf3b4	77	82.468	ENSCCAG00000021751	-	54	95.833	Cebus_capucinus
ENSIPUG00000012242	Sf3b4	77	81.250	ENSCATG00000033114	SF3B4	57	96.667	Cercocebus_atys
ENSIPUG00000012242	Sf3b4	77	80.000	ENSCLAG00000015851	SF3B4	57	96.667	Chinchilla_lanigera
ENSIPUG00000012242	Sf3b4	77	81.250	ENSCSAG00000018129	SF3B4	57	96.667	Chlorocebus_sabaeus
ENSIPUG00000012242	Sf3b4	54	100.000	ENSCPBG00000008041	SF3B4	55	98.261	Chrysemys_picta_bellii
ENSIPUG00000012242	Sf3b4	54	90.654	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSIPUG00000012242	Sf3b4	55	91.429	ENSCSAVG00000007809	-	88	89.697	Ciona_savignyi
ENSIPUG00000012242	Sf3b4	77	81.250	ENSCANG00000035579	SF3B4	57	96.667	Colobus_angolensis_palliatus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSCGRG00001003590	Sf3b4	57	96.667	Cricetulus_griseus_chok1gshd
ENSIPUG00000012242	Sf3b4	60	96.667	ENSCGRG00000016914	Sf3b4	57	96.667	Cricetulus_griseus_crigri
ENSIPUG00000012242	Sf3b4	66	94.697	ENSCVAG00000005536	sf3b4	59	95.633	Cyprinodon_variegatus
ENSIPUG00000012242	Sf3b4	60	99.583	ENSDARG00000018574	sf3b4	69	97.826	Danio_rerio
ENSIPUG00000012242	Sf3b4	58	91.379	ENSDNOG00000048908	-	54	93.363	Dasypus_novemcinctus
ENSIPUG00000012242	Sf3b4	97	64.912	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSDORG00000016366	Sf3b4	57	96.667	Dipodomys_ordii
ENSIPUG00000012242	Sf3b4	57	88.158	ENSETEG00000008963	SF3B4	54	87.826	Echinops_telfairi
ENSIPUG00000012242	Sf3b4	60	96.667	ENSEASG00005001477	SF3B4	57	96.667	Equus_asinus_asinus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSECAG00000024737	SF3B4	57	96.667	Equus_caballus
ENSIPUG00000012242	Sf3b4	87	90.625	ENSELUG00000012876	sf3b4	60	98.750	Esox_lucius
ENSIPUG00000012242	Sf3b4	60	96.667	ENSFCAG00000010106	SF3B4	57	96.667	Felis_catus
ENSIPUG00000012242	Sf3b4	77	80.000	ENSFDAG00000009286	SF3B4	57	96.667	Fukomys_damarensis
ENSIPUG00000012242	Sf3b4	58	97.826	ENSGMOG00000002519	sf3b4	67	97.826	Gadus_morhua
ENSIPUG00000012242	Sf3b4	54	100.000	ENSGALG00000013352	SF3B4	55	98.696	Gallus_gallus
ENSIPUG00000012242	Sf3b4	66	95.455	ENSGAFG00000010181	sf3b4	61	97.500	Gambusia_affinis
ENSIPUG00000012242	Sf3b4	57	99.559	ENSGACG00000003819	sf3b4	58	98.696	Gasterosteus_aculeatus
ENSIPUG00000012242	Sf3b4	77	81.250	ENSGGOG00000004761	SF3B4	57	96.667	Gorilla_gorilla
ENSIPUG00000012242	Sf3b4	77	70.927	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSIPUG00000012242	Sf3b4	67	95.522	ENSHBUG00000002028	sf3b4	69	94.203	Haplochromis_burtoni
ENSIPUG00000012242	Sf3b4	77	80.000	ENSHGLG00000012360	SF3B4	57	96.667	Heterocephalus_glaber_female
ENSIPUG00000012242	Sf3b4	77	80.063	ENSHGLG00100008533	SF3B4	57	96.667	Heterocephalus_glaber_male
ENSIPUG00000012242	Sf3b4	57	96.916	ENSHCOG00000003014	sf3b4	57	96.507	Hippocampus_comes
ENSIPUG00000012242	Sf3b4	60	96.667	ENSSTOG00000000684	-	57	96.667	Ictidomys_tridecemlineatus
ENSIPUG00000012242	Sf3b4	59	71.429	ENSJJAG00000022500	Sf3b4	59	71.429	Jaculus_jaculus
ENSIPUG00000012242	Sf3b4	95	83.862	ENSKMAG00000008154	sf3b4	62	98.765	Kryptolebias_marmoratus
ENSIPUG00000012242	Sf3b4	58	98.283	ENSLBEG00000026818	sf3b4	58	99.130	Labrus_bergylta
ENSIPUG00000012242	Sf3b4	60	95.000	ENSLACG00000004436	SF3B4	66	95.000	Latimeria_chalumnae
ENSIPUG00000012242	Sf3b4	57	99.563	ENSLOCG00000009048	sf3b4	55	99.130	Lepisosteus_oculatus
ENSIPUG00000012242	Sf3b4	77	80.247	ENSLAFG00000008531	SF3B4	56	96.667	Loxodonta_africana
ENSIPUG00000012242	Sf3b4	89	63.014	ENSMFAG00000039067	-	58	79.263	Macaca_fascicularis
ENSIPUG00000012242	Sf3b4	77	81.250	ENSMFAG00000042395	SF3B4	57	96.667	Macaca_fascicularis
ENSIPUG00000012242	Sf3b4	77	81.250	ENSMMUG00000007256	SF3B4	57	96.667	Macaca_mulatta
ENSIPUG00000012242	Sf3b4	77	81.250	ENSMNEG00000031839	SF3B4	57	96.667	Macaca_nemestrina
ENSIPUG00000012242	Sf3b4	89	60.811	ENSMNEG00000031526	-	58	78.802	Macaca_nemestrina
ENSIPUG00000012242	Sf3b4	77	81.250	ENSMLEG00000038667	SF3B4	57	96.667	Mandrillus_leucophaeus
ENSIPUG00000012242	Sf3b4	60	97.500	ENSMAMG00000014692	sf3b4	60	97.500	Mastacembelus_armatus
ENSIPUG00000012242	Sf3b4	67	95.522	ENSMZEG00005026741	sf3b4	69	94.203	Maylandia_zebra
ENSIPUG00000012242	Sf3b4	54	100.000	ENSMGAG00000000653	SF3B4	55	98.696	Meleagris_gallopavo
ENSIPUG00000012242	Sf3b4	60	96.667	ENSMAUG00000015266	Sf3b4	57	96.667	Mesocricetus_auratus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSMICG00000044961	SF3B4	57	96.667	Microcebus_murinus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSMOCG00000013658	-	57	96.667	Microtus_ochrogaster
ENSIPUG00000012242	Sf3b4	92	73.615	ENSMOCG00000014155	-	57	94.372	Microtus_ochrogaster
ENSIPUG00000012242	Sf3b4	58	98.696	ENSMMOG00000018032	sf3b4	59	98.696	Mola_mola
ENSIPUG00000012242	Sf3b4	77	81.250	ENSMODG00000018767	SF3B4	57	96.667	Monodelphis_domestica
ENSIPUG00000012242	Sf3b4	68	93.704	ENSMALG00000006174	sf3b4	60	97.531	Monopterus_albus
ENSIPUG00000012242	Sf3b4	77	79.937	MGP_CAROLIEiJ_G0025365	Sf3b4	57	96.667	Mus_caroli
ENSIPUG00000012242	Sf3b4	60	96.667	ENSMUSG00000068856	Sf3b4	57	96.667	Mus_musculus
ENSIPUG00000012242	Sf3b4	60	96.667	MGP_PahariEiJ_G0026809	Sf3b4	57	96.667	Mus_pahari
ENSIPUG00000012242	Sf3b4	60	96.667	MGP_SPRETEiJ_G0026309	Sf3b4	57	96.667	Mus_spretus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSMPUG00000005563	SF3B4	57	96.667	Mustela_putorius_furo
ENSIPUG00000012242	Sf3b4	60	96.667	ENSMLUG00000010789	SF3B4	57	96.667	Myotis_lucifugus
ENSIPUG00000012242	Sf3b4	77	82.132	ENSNGAG00000016337	Sf3b4	57	96.667	Nannospalax_galili
ENSIPUG00000012242	Sf3b4	67	95.896	ENSNBRG00000013865	sf3b4	69	94.565	Neolamprologus_brichardi
ENSIPUG00000012242	Sf3b4	57	93.860	ENSOPRG00000010808	SF3B4	54	93.478	Ochotona_princeps
ENSIPUG00000012242	Sf3b4	90	60.533	ENSODEG00000003597	-	59	80.498	Octodon_degus
ENSIPUG00000012242	Sf3b4	89	60.976	ENSODEG00000008916	-	52	79.793	Octodon_degus
ENSIPUG00000012242	Sf3b4	67	95.149	ENSONIG00000002730	sf3b4	69	93.841	Oreochromis_niloticus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSOCUG00000004614	SF3B4	57	96.667	Oryctolagus_cuniculus
ENSIPUG00000012242	Sf3b4	75	89.109	ENSORLG00000003062	sf3b4	59	98.696	Oryzias_latipes
ENSIPUG00000012242	Sf3b4	75	89.109	ENSORLG00020000687	sf3b4	58	98.696	Oryzias_latipes_hni
ENSIPUG00000012242	Sf3b4	75	89.109	ENSORLG00015010989	sf3b4	58	98.696	Oryzias_latipes_hsok
ENSIPUG00000012242	Sf3b4	58	97.845	ENSOMEG00000013694	sf3b4	58	98.696	Oryzias_melastigma
ENSIPUG00000012242	Sf3b4	60	96.667	ENSOGAG00000006265	SF3B4	57	96.667	Otolemur_garnettii
ENSIPUG00000012242	Sf3b4	60	96.667	ENSOARG00000020718	-	57	96.667	Ovis_aries
ENSIPUG00000012242	Sf3b4	86	64.384	ENSOARG00000007368	-	55	81.416	Ovis_aries
ENSIPUG00000012242	Sf3b4	99	66.827	ENSPPAG00000030024	-	59	86.667	Pan_paniscus
ENSIPUG00000012242	Sf3b4	77	81.250	ENSPPAG00000040904	SF3B4	57	96.667	Pan_paniscus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSPPRG00000007384	SF3B4	57	96.667	Panthera_pardus
ENSIPUG00000012242	Sf3b4	77	79.688	ENSPTIG00000014530	SF3B4	57	96.667	Panthera_tigris_altaica
ENSIPUG00000012242	Sf3b4	79	76.190	ENSPTRG00000049727	-	60	87.083	Pan_troglodytes
ENSIPUG00000012242	Sf3b4	77	81.250	ENSPTRG00000001243	SF3B4	57	96.667	Pan_troglodytes
ENSIPUG00000012242	Sf3b4	77	81.250	ENSPANG00000005126	SF3B4	57	96.667	Papio_anubis
ENSIPUG00000012242	Sf3b4	66	78.491	ENSPSIG00000009565	SF3B4	68	98.387	Pelodiscus_sinensis
ENSIPUG00000012242	Sf3b4	60	96.667	ENSPEMG00000017568	Sf3b4	57	96.667	Peromyscus_maniculatus_bairdii
ENSIPUG00000012242	Sf3b4	64	87.109	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSIPUG00000012242	Sf3b4	77	81.250	ENSPCIG00000008765	SF3B4	57	96.667	Phascolarctos_cinereus
ENSIPUG00000012242	Sf3b4	67	95.506	ENSPFOG00000005754	sf3b4	62	97.942	Poecilia_formosa
ENSIPUG00000012242	Sf3b4	67	95.506	ENSPLAG00000001401	sf3b4	67	97.942	Poecilia_latipinna
ENSIPUG00000012242	Sf3b4	67	95.506	ENSPREG00000011076	sf3b4	60	97.942	Poecilia_reticulata
ENSIPUG00000012242	Sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSIPUG00000012242	Sf3b4	60	96.667	ENSPCOG00000015399	SF3B4	57	96.667	Propithecus_coquereli
ENSIPUG00000012242	Sf3b4	60	96.667	ENSPVAG00000014171	SF3B4	57	96.667	Pteropus_vampyrus
ENSIPUG00000012242	Sf3b4	67	95.522	ENSPNYG00000012700	sf3b4	69	94.203	Pundamilia_nyererei
ENSIPUG00000012242	Sf3b4	72	96.528	ENSPNAG00000000686	sf3b4	73	96.528	Pygocentrus_nattereri
ENSIPUG00000012242	Sf3b4	60	96.667	ENSRNOG00000021181	Sf3b4	57	96.667	Rattus_norvegicus
ENSIPUG00000012242	Sf3b4	77	81.250	ENSRBIG00000043392	SF3B4	57	96.667	Rhinopithecus_bieti
ENSIPUG00000012242	Sf3b4	92	60.995	ENSRROG00000028213	-	56	74.324	Rhinopithecus_roxellana
ENSIPUG00000012242	Sf3b4	77	81.250	ENSRROG00000029366	SF3B4	57	96.667	Rhinopithecus_roxellana
ENSIPUG00000012242	Sf3b4	77	80.938	ENSSBOG00000012310	-	57	96.250	Saimiri_boliviensis_boliviensis
ENSIPUG00000012242	Sf3b4	77	77.812	ENSSHAG00000004043	SF3B4	53	95.890	Sarcophilus_harrisii
ENSIPUG00000012242	Sf3b4	72	95.470	ENSSFOG00015008864	sf3b4	71	95.486	Scleropages_formosus
ENSIPUG00000012242	Sf3b4	75	91.000	ENSSMAG00000006837	sf3b4	60	98.333	Scophthalmus_maximus
ENSIPUG00000012242	Sf3b4	66	96.591	ENSSDUG00000012064	sf3b4	68	94.565	Seriola_dumerili
ENSIPUG00000012242	Sf3b4	66	96.970	ENSSLDG00000014226	sf3b4	60	98.333	Seriola_lalandi_dorsalis
ENSIPUG00000012242	Sf3b4	62	94.715	ENSSPUG00000001028	SF3B4	58	98.261	Sphenodon_punctatus
ENSIPUG00000012242	Sf3b4	60	98.333	ENSSPAG00000019219	sf3b4	69	95.290	Stegastes_partitus
ENSIPUG00000012242	Sf3b4	77	80.186	ENSSSCG00000006665	-	57	96.667	Sus_scrofa
ENSIPUG00000012242	Sf3b4	61	95.455	ENSTGUG00000004470	SF3B4	91	98.696	Taeniopygia_guttata
ENSIPUG00000012242	Sf3b4	79	86.875	ENSTRUG00000004516	sf3b4	58	97.826	Takifugu_rubripes
ENSIPUG00000012242	Sf3b4	58	98.696	ENSTNIG00000009156	sf3b4	59	98.696	Tetraodon_nigroviridis
ENSIPUG00000012242	Sf3b4	60	96.667	ENSTTRG00000005217	SF3B4	57	96.667	Tursiops_truncatus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSUAMG00000022468	SF3B4	57	96.667	Ursus_americanus
ENSIPUG00000012242	Sf3b4	60	96.667	ENSUMAG00000003802	SF3B4	57	96.667	Ursus_maritimus
ENSIPUG00000012242	Sf3b4	57	96.491	ENSVPAG00000008152	SF3B4	55	96.491	Vicugna_pacos
ENSIPUG00000012242	Sf3b4	77	82.026	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSIPUG00000012242	Sf3b4	67	95.131	ENSXCOG00000019895	sf3b4	62	97.531	Xiphophorus_couchianus
ENSIPUG00000012242	Sf3b4	66	95.833	ENSXMAG00000003772	sf3b4	62	97.531	Xiphophorus_maculatus