EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000012401 (Gene tree)
Gene ID: 108258427
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease PARN-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 7434 bases
Position: chr26:18631712-18639145
Accession: 108258427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018317	RNA_bind	PF08675.11	6.4e-30	1	1
ENSIPUP00000018317	CAF1	PF04857.20	2.4e-87	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000019095	-	1791	XM_017457038	ENSIPUP00000018317	596 (aa)	XP_017312527	-

Gene Model

Click here to download ENSIPUG00000012401's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012401's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012401	parn	84	62.995	ENSG00000140694	PARN	91	69.492	Homo_sapiens
ENSIPUG00000012401	parn	79	65.356	ENSAMEG00000011208	PARN	84	65.356	Ailuropoda_melanoleuca
ENSIPUG00000012401	parn	81	68.670	ENSACIG00000000619	parn	85	68.431	Amphilophus_citrinellus
ENSIPUG00000012401	parn	100	61.583	ENSAOCG00000003465	parn	100	61.383	Amphiprion_ocellaris
ENSIPUG00000012401	parn	69	71.548	ENSAPEG00000010661	parn	92	71.279	Amphiprion_percula
ENSIPUG00000012401	parn	100	62.609	ENSATEG00000004661	parn	100	62.518	Anabas_testudineus
ENSIPUG00000012401	parn	84	63.112	ENSAPLG00000013914	PARN	90	63.112	Anas_platyrhynchos
ENSIPUG00000012401	parn	84	63.432	ENSACAG00000004973	PARN	89	63.322	Anolis_carolinensis
ENSIPUG00000012401	parn	84	62.892	ENSANAG00000031516	PARN	100	69.492	Aotus_nancymaae
ENSIPUG00000012401	parn	100	61.842	ENSACLG00000004742	parn	100	61.933	Astatotilapia_calliptera
ENSIPUG00000012401	parn	100	69.683	ENSAMXG00000012390	parn	97	74.221	Astyanax_mexicanus
ENSIPUG00000012401	parn	87	58.900	ENSBTAG00000018097	PARN	92	58.900	Bos_taurus
ENSIPUG00000012401	parn	84	62.823	ENSCJAG00000015866	PARN	91	69.492	Callithrix_jacchus
ENSIPUG00000012401	parn	84	61.831	ENSCAFG00000018795	PARN	100	55.704	Canis_familiaris
ENSIPUG00000012401	parn	84	61.658	ENSCAFG00020024126	PARN	100	55.556	Canis_lupus_dingo
ENSIPUG00000012401	parn	84	62.414	ENSCHIG00000018143	PARN	90	62.414	Capra_hircus
ENSIPUG00000012401	parn	68	47.333	ENSCAPG00000007984	PARN	78	47.111	Cavia_aperea
ENSIPUG00000012401	parn	79	65.291	ENSCPOG00000002263	PARN	84	65.291	Cavia_porcellus
ENSIPUG00000012401	parn	84	62.823	ENSCCAG00000030367	PARN	91	69.492	Cebus_capucinus
ENSIPUG00000012401	parn	79	66.290	ENSCATG00000041368	PARN	95	66.290	Cercocebus_atys
ENSIPUG00000012401	parn	79	65.291	ENSCLAG00000015406	PARN	100	53.418	Chinchilla_lanigera
ENSIPUG00000012401	parn	84	63.415	ENSCSAG00000008142	PARN	90	63.415	Chlorocebus_sabaeus
ENSIPUG00000012401	parn	83	47.748	ENSCHOG00000007014	PARN	91	54.950	Choloepus_hoffmanni
ENSIPUG00000012401	parn	75	62.548	ENSCPBG00000006609	PARN	89	62.551	Chrysemys_picta_bellii
ENSIPUG00000012401	parn	76	36.210	ENSCING00000010142	-	99	35.660	Ciona_intestinalis
ENSIPUG00000012401	parn	84	55.043	ENSCANG00000028849	-	86	69.492	Colobus_angolensis_palliatus
ENSIPUG00000012401	parn	85	60.976	ENSCGRG00001012096	Parn	91	60.976	Cricetulus_griseus_chok1gshd
ENSIPUG00000012401	parn	85	60.976	ENSCGRG00000004939	Parn	91	60.976	Cricetulus_griseus_crigri
ENSIPUG00000012401	parn	100	60.029	ENSCSEG00000002064	parn	100	59.827	Cynoglossus_semilaevis
ENSIPUG00000012401	parn	100	59.538	ENSCVAG00000014848	parn	100	59.334	Cyprinodon_variegatus
ENSIPUG00000012401	parn	100	64.759	ENSDARG00000102634	parn	100	66.667	Danio_rerio
ENSIPUG00000012401	parn	84	63.351	ENSDNOG00000000833	PARN	94	66.229	Dasypus_novemcinctus
ENSIPUG00000012401	parn	59	67.317	ENSETEG00000014828	-	60	67.317	Echinops_telfairi
ENSIPUG00000012401	parn	58	30.591	ENSEBUG00000008118	PNLDC1	73	30.591	Eptatretus_burgeri
ENSIPUG00000012401	parn	84	63.351	ENSEASG00005011400	PARN	90	63.351	Equus_asinus_asinus
ENSIPUG00000012401	parn	84	63.351	ENSECAG00000017792	PARN	90	63.351	Equus_caballus
ENSIPUG00000012401	parn	59	77.778	ENSEEUG00000010370	PARN	69	77.778	Erinaceus_europaeus
ENSIPUG00000012401	parn	100	63.063	ENSELUG00000013139	parn	90	62.857	Esox_lucius
ENSIPUG00000012401	parn	84	62.762	ENSFCAG00000044961	PARN	100	67.797	Felis_catus
ENSIPUG00000012401	parn	84	62.937	ENSFALG00000003911	PARN	89	62.937	Ficedula_albicollis
ENSIPUG00000012401	parn	84	63.214	ENSFDAG00000009234	PARN	100	58.560	Fukomys_damarensis
ENSIPUG00000012401	parn	95	56.923	ENSFHEG00000013738	parn	92	81.356	Fundulus_heteroclitus
ENSIPUG00000012401	parn	80	69.630	ENSGMOG00000003231	parn	98	69.388	Gadus_morhua
ENSIPUG00000012401	parn	85	62.694	ENSGALG00000003091	PARN	91	62.694	Gallus_gallus
ENSIPUG00000012401	parn	100	59.026	ENSGAFG00000011061	parn	100	59.366	Gambusia_affinis
ENSIPUG00000012401	parn	85	68.761	ENSGACG00000019501	parn	100	62.330	Gasterosteus_aculeatus
ENSIPUG00000012401	parn	84	62.823	ENSGGOG00000025224	PARN	91	69.492	Gorilla_gorilla
ENSIPUG00000012401	parn	100	61.662	ENSHBUG00000017906	parn	91	71.296	Haplochromis_burtoni
ENSIPUG00000012401	parn	85	61.039	ENSHGLG00000010886	PARN	90	61.224	Heterocephalus_glaber_female
ENSIPUG00000012401	parn	85	61.039	ENSHGLG00100014659	PARN	90	61.224	Heterocephalus_glaber_male
ENSIPUG00000012401	parn	80	67.416	ENSHCOG00000008683	parn	93	67.416	Hippocampus_comes
ENSIPUG00000012401	parn	86	61.921	ENSSTOG00000007519	PARN	100	58.360	Ictidomys_tridecemlineatus
ENSIPUG00000012401	parn	87	62.045	ENSJJAG00000023049	Parn	92	62.045	Jaculus_jaculus
ENSIPUG00000012401	parn	100	59.885	ENSKMAG00000009462	parn	100	59.971	Kryptolebias_marmoratus
ENSIPUG00000012401	parn	96	63.537	ENSLBEG00000009167	parn	99	63.323	Labrus_bergylta
ENSIPUG00000012401	parn	74	62.749	ENSLACG00000004207	PARN	97	63.835	Latimeria_chalumnae
ENSIPUG00000012401	parn	100	59.483	ENSLOCG00000000715	parn	100	60.347	Lepisosteus_oculatus
ENSIPUG00000012401	parn	84	62.937	ENSLAFG00000015036	PARN	100	58.621	Loxodonta_africana
ENSIPUG00000012401	parn	84	62.153	ENSMFAG00000044852	PARN	86	69.492	Macaca_fascicularis
ENSIPUG00000012401	parn	84	63.167	ENSMMUG00000018849	PARN	86	69.492	Macaca_mulatta
ENSIPUG00000012401	parn	84	63.167	ENSMNEG00000045108	PARN	86	69.492	Macaca_nemestrina
ENSIPUG00000012401	parn	84	62.995	ENSMLEG00000031743	PARN	86	69.492	Mandrillus_leucophaeus
ENSIPUG00000012401	parn	100	61.360	ENSMAMG00000006939	parn	100	61.449	Mastacembelus_armatus
ENSIPUG00000012401	parn	100	61.842	ENSMZEG00005013590	parn	91	71.165	Maylandia_zebra
ENSIPUG00000012401	parn	84	61.296	ENSMGAG00000001004	PARN	94	59.599	Meleagris_gallopavo
ENSIPUG00000012401	parn	79	58.672	ENSMAUG00000008025	Parn	100	51.343	Mesocricetus_auratus
ENSIPUG00000012401	parn	84	62.823	ENSMICG00000016053	PARN	91	67.797	Microcebus_murinus
ENSIPUG00000012401	parn	73	63.563	ENSMOCG00000022211	Parn	100	63.563	Microtus_ochrogaster
ENSIPUG00000012401	parn	80	74.181	ENSMMOG00000011333	parn	88	73.938	Mola_mola
ENSIPUG00000012401	parn	73	66.935	ENSMODG00000004915	PARN	99	66.935	Monodelphis_domestica
ENSIPUG00000012401	parn	95	60.666	ENSMALG00000019426	parn	92	70.795	Monopterus_albus
ENSIPUG00000012401	parn	84	61.471	MGP_CAROLIEiJ_G0020466	Parn	89	61.471	Mus_caroli
ENSIPUG00000012401	parn	84	61.471	ENSMUSG00000022685	Parn	100	67.073	Mus_musculus
ENSIPUG00000012401	parn	84	61.296	MGP_PahariEiJ_G0016172	Parn	89	61.296	Mus_pahari
ENSIPUG00000012401	parn	84	61.296	MGP_SPRETEiJ_G0021361	Parn	89	61.296	Mus_spretus
ENSIPUG00000012401	parn	82	63.028	ENSMPUG00000014464	PARN	100	56.148	Mustela_putorius_furo
ENSIPUG00000012401	parn	72	65.385	ENSMLUG00000005414	PARN	100	65.385	Myotis_lucifugus
ENSIPUG00000012401	parn	80	73.070	ENSNBRG00000006805	parn	91	72.830	Neolamprologus_brichardi
ENSIPUG00000012401	parn	87	62.351	ENSNLEG00000010241	PARN	91	69.492	Nomascus_leucogenys
ENSIPUG00000012401	parn	64	64.835	ENSMEUG00000008178	-	62	64.706	Notamacropus_eugenii
ENSIPUG00000012401	parn	83	60.638	ENSOPRG00000012187	PARN	89	60.638	Ochotona_princeps
ENSIPUG00000012401	parn	79	60.377	ENSODEG00000001617	PARN	85	60.377	Octodon_degus
ENSIPUG00000012401	parn	100	62.245	ENSONIG00000000151	parn	100	62.336	Oreochromis_niloticus
ENSIPUG00000012401	parn	52	64.848	ENSOANG00000020155	-	97	56.127	Ornithorhynchus_anatinus
ENSIPUG00000012401	parn	99	57.055	ENSOCUG00000000322	PARN	99	57.055	Oryctolagus_cuniculus
ENSIPUG00000012401	parn	100	61.856	ENSORLG00020010313	parn	100	62.537	Oryzias_latipes_hni
ENSIPUG00000012401	parn	100	61.708	ENSORLG00015000300	parn	100	62.389	Oryzias_latipes_hsok
ENSIPUG00000012401	parn	100	61.347	ENSOMEG00000019555	parn	100	61.640	Oryzias_melastigma
ENSIPUG00000012401	parn	72	64.242	ENSOGAG00000014626	PARN	100	64.040	Otolemur_garnettii
ENSIPUG00000012401	parn	72	65.992	ENSOARG00000007574	PARN	100	65.992	Ovis_aries
ENSIPUG00000012401	parn	84	62.995	ENSPPAG00000031438	PARN	91	69.492	Pan_paniscus
ENSIPUG00000012401	parn	84	62.762	ENSPPRG00000018583	PARN	100	67.797	Panthera_pardus
ENSIPUG00000012401	parn	84	62.762	ENSPTIG00000012135	PARN	100	67.797	Panthera_tigris_altaica
ENSIPUG00000012401	parn	84	62.995	ENSPTRG00000007792	PARN	91	69.492	Pan_troglodytes
ENSIPUG00000012401	parn	84	61.102	ENSPANG00000020099	PARN	86	69.492	Papio_anubis
ENSIPUG00000012401	parn	96	62.187	ENSPKIG00000022807	parn	90	67.491	Paramormyrops_kingsleyae
ENSIPUG00000012401	parn	85	63.903	ENSPSIG00000014804	PARN	100	55.941	Pelodiscus_sinensis
ENSIPUG00000012401	parn	91	60.968	ENSPMGG00000014431	parn	86	60.905	Periophthalmus_magnuspinnatus
ENSIPUG00000012401	parn	84	60.106	ENSPEMG00000018439	Parn	89	60.106	Peromyscus_maniculatus_bairdii
ENSIPUG00000012401	parn	77	57.885	ENSPMAG00000003956	parn	98	57.611	Petromyzon_marinus
ENSIPUG00000012401	parn	61	65.174	ENSPCIG00000001259	PARN	91	69.492	Phascolarctos_cinereus
ENSIPUG00000012401	parn	100	59.712	ENSPFOG00000012823	parn	100	59.798	Poecilia_formosa
ENSIPUG00000012401	parn	100	59.712	ENSPLAG00000006395	parn	100	59.797	Poecilia_latipinna
ENSIPUG00000012401	parn	100	59.682	ENSPMEG00000007711	parn	100	59.768	Poecilia_mexicana
ENSIPUG00000012401	parn	100	59.682	ENSPREG00000000147	parn	100	59.479	Poecilia_reticulata
ENSIPUG00000012401	parn	84	63.058	ENSPPYG00000007123	PARN	90	63.058	Pongo_abelii
ENSIPUG00000012401	parn	74	57.800	ENSPCAG00000001741	PARN	100	50.080	Procavia_capensis
ENSIPUG00000012401	parn	84	59.725	ENSPCOG00000019292	PARN	91	67.797	Propithecus_coquereli
ENSIPUG00000012401	parn	83	61.955	ENSPVAG00000002547	PARN	90	61.955	Pteropus_vampyrus
ENSIPUG00000012401	parn	100	61.773	ENSPNYG00000006835	parn	100	61.863	Pundamilia_nyererei
ENSIPUG00000012401	parn	92	70.665	ENSPNAG00000018905	parn	100	70.455	Pygocentrus_nattereri
ENSIPUG00000012401	parn	84	61.996	ENSRNOG00000002912	Parn	96	75.258	Rattus_norvegicus
ENSIPUG00000012401	parn	84	64.613	ENSSBOG00000034726	PARN	86	69.492	Saimiri_boliviensis_boliviensis
ENSIPUG00000012401	parn	59	68.317	ENSSHAG00000008493	PARN	90	68.317	Sarcophilus_harrisii
ENSIPUG00000012401	parn	100	58.501	ENSSFOG00015014165	parn	97	65.240	Scleropages_formosus
ENSIPUG00000012401	parn	100	59.433	ENSSMAG00000000685	parn	93	62.557	Scophthalmus_maximus
ENSIPUG00000012401	parn	100	61.905	ENSSDUG00000014555	parn	100	61.850	Seriola_dumerili
ENSIPUG00000012401	parn	63	65.207	ENSSARG00000014339	PARN	75	65.207	Sorex_araneus
ENSIPUG00000012401	parn	85	62.264	ENSSPUG00000007719	PARN	100	56.185	Sphenodon_punctatus
ENSIPUG00000012401	parn	100	63.135	ENSSPAG00000007095	parn	100	62.936	Stegastes_partitus
ENSIPUG00000012401	parn	79	69.080	ENSSSCG00000007878	PARN	74	69.080	Sus_scrofa
ENSIPUG00000012401	parn	84	62.937	ENSTGUG00000004971	PARN	99	57.121	Taeniopygia_guttata
ENSIPUG00000012401	parn	100	63.158	ENSTNIG00000008252	parn	100	63.102	Tetraodon_nigroviridis
ENSIPUG00000012401	parn	74	51.248	ENSTBEG00000010407	PARN	89	51.556	Tupaia_belangeri
ENSIPUG00000012401	parn	83	58.639	ENSTTRG00000002843	PARN	90	58.639	Tursiops_truncatus
ENSIPUG00000012401	parn	63	61.717	ENSUAMG00000008283	PARN	94	59.251	Ursus_americanus
ENSIPUG00000012401	parn	79	65.854	ENSUMAG00000004527	PARN	84	65.854	Ursus_maritimus
ENSIPUG00000012401	parn	83	60.247	ENSVPAG00000008968	PARN	92	60.247	Vicugna_pacos
ENSIPUG00000012401	parn	84	62.003	ENSVVUG00000019509	PARN	100	55.852	Vulpes_vulpes
ENSIPUG00000012401	parn	99	56.146	ENSXETG00000010994	parn	100	65.524	Xenopus_tropicalis
ENSIPUG00000012401	parn	89	62.000	ENSXCOG00000015990	parn	100	62.126	Xiphophorus_couchianus
ENSIPUG00000012401	parn	100	59.483	ENSXMAG00000014783	parn	100	59.827	Xiphophorus_maculatus