EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000012467 (Gene tree)
Gene ID: 108259735
Gene Symbol: srrm3
Alias: FLJ37078
Full Name: serine/arginine repetitive matrix 3
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 94060 bases
Position: chr28:12073543-12167602
Accession: 108259735
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018329	cwf21	PF08312.12	4.2e-15	1	1
ENSIPUP00000018329	SRRM_C	PF15230.6	1.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000019109	-	5280	XM_017459445	ENSIPUP00000018329	619 (aa)	XP_017314934	A0A2D0Q9G3

Gene Model

Click here to download ENSIPUG00000012467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012467's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012467	srrm3	87	56.529	ENSAPOG00000000288	SRRM3	87	53.688	Acanthochromis_polyacanthus
ENSIPUG00000012467	srrm3	87	54.545	ENSACLG00000005269	SRRM3	87	49.829	Astatotilapia_calliptera
ENSIPUG00000012467	srrm3	87	75.583	ENSAMXG00000016051	-	87	74.147	Astyanax_mexicanus
ENSIPUG00000012467	srrm3	87	52.211	ENSCSEG00000010978	-	80	50.422	Cynoglossus_semilaevis
ENSIPUG00000012467	srrm3	87	52.870	ENSGAFG00000014777	SRRM3	87	51.031	Gambusia_affinis
ENSIPUG00000012467	srrm3	87	54.437	ENSHBUG00000005061	SRRM3	87	49.659	Haplochromis_burtoni
ENSIPUG00000012467	srrm3	88	52.300	ENSKMAG00000013495	SRRM3	87	49.571	Kryptolebias_marmoratus
ENSIPUG00000012467	srrm3	78	43.510	ENSLACG00000008008	SRRM3	96	44.898	Latimeria_chalumnae
ENSIPUG00000012467	srrm3	52	60.299	ENSLOCG00000002879	SRRM3	99	60.180	Lepisosteus_oculatus
ENSIPUG00000012467	srrm3	89	51.852	ENSMALG00000000844	-	89	52.226	Monopterus_albus
ENSIPUG00000012467	srrm3	87	46.416	ENSONIG00000012732	-	99	45.561	Oreochromis_niloticus
ENSIPUG00000012467	srrm3	87	52.487	ENSORLG00000026242	-	89	51.724	Oryzias_latipes
ENSIPUG00000012467	srrm3	87	52.316	ENSORLG00020016592	-	89	52.069	Oryzias_latipes_hni
ENSIPUG00000012467	srrm3	87	51.973	ENSORLG00015022712	SRRM3	89	51.379	Oryzias_latipes_hsok
ENSIPUG00000012467	srrm3	87	52.226	ENSOMEG00000010768	-	88	48.027	Oryzias_melastigma
ENSIPUG00000012467	srrm3	87	53.484	ENSPKIG00000017233	SRRM3	84	55.556	Paramormyrops_kingsleyae
ENSIPUG00000012467	srrm3	87	52.759	ENSPMEG00000011981	-	87	50.950	Poecilia_mexicana
ENSIPUG00000012467	srrm3	87	53.356	ENSPREG00000008138	-	87	51.724	Poecilia_reticulata
ENSIPUG00000012467	srrm3	87	76.165	ENSPNAG00000009621	SRRM3	87	78.495	Pygocentrus_nattereri
ENSIPUG00000012467	srrm3	64	56.355	ENSSFOG00015001696	SRRM3	92	56.853	Scleropages_formosus
ENSIPUG00000012467	srrm3	87	53.741	ENSSMAG00000000476	SRRM3	88	51.273	Scophthalmus_maximus
ENSIPUG00000012467	srrm3	87	53.120	ENSSLDG00000020070	SRRM3	87	54.698	Seriola_lalandi_dorsalis
ENSIPUG00000012467	srrm3	87	52.696	ENSXMAG00000005663	-	87	50.344	Xiphophorus_maculatus