EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000012493 (Gene tree)
Gene ID: 108276907
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 47396 bases
Position: chr16:17861904-17909299
Accession: 108276907
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018413	EST1	PF10374.9	2.2e-14	1	1
ENSIPUP00000018379	EST1	PF10374.9	2.2e-14	1	1
ENSIPUP00000018413	EST1_DNA_bind	PF10373.9	4e-61	1	1
ENSIPUP00000018379	EST1_DNA_bind	PF10373.9	3.4e-60	1	1
ENSIPUP00000018413	PIN_4	PF13638.6	6.5e-21	1	1
ENSIPUP00000018379	PIN_4	PF13638.6	6.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000019196	-	6230	XM_017488997	ENSIPUP00000018413	1598 (aa)	XP_017344486	A0A2D0SPR1
ENSIPUT00000019158	-	6254	XM_017488995	ENSIPUP00000018379	1606 (aa)	XP_017344484	A0A2D0SP55

Gene Model

Click here to download ENSIPUG00000012493's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012493's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012493	smg6	75	54.424	ENSG00000070366	SMG6	100	61.860	Homo_sapiens
ENSIPUG00000012493	smg6	100	54.443	ENSAPOG00000019448	smg6	100	54.831	Acanthochromis_polyacanthus
ENSIPUG00000012493	smg6	76	54.202	ENSAMEG00000007632	SMG6	85	54.376	Ailuropoda_melanoleuca
ENSIPUG00000012493	smg6	93	54.324	ENSACIG00000012997	smg6	99	55.671	Amphilophus_citrinellus
ENSIPUG00000012493	smg6	100	54.358	ENSAOCG00000002630	smg6	100	54.841	Amphiprion_ocellaris
ENSIPUG00000012493	smg6	100	54.368	ENSAPEG00000019101	smg6	100	54.944	Amphiprion_percula
ENSIPUG00000012493	smg6	100	52.896	ENSATEG00000006483	smg6	100	53.419	Anabas_testudineus
ENSIPUG00000012493	smg6	65	48.981	ENSACAG00000011783	SMG6	86	48.607	Anolis_carolinensis
ENSIPUG00000012493	smg6	75	54.503	ENSANAG00000035760	SMG6	83	55.110	Aotus_nancymaae
ENSIPUG00000012493	smg6	100	53.243	ENSACLG00000005288	smg6	100	54.362	Astatotilapia_calliptera
ENSIPUG00000012493	smg6	88	74.672	ENSAMXG00000017326	smg6	99	59.744	Astyanax_mexicanus
ENSIPUG00000012493	smg6	79	53.609	ENSBTAG00000000267	SMG6	87	54.720	Bos_taurus
ENSIPUG00000012493	smg6	75	54.917	ENSCJAG00000001820	SMG6	83	54.953	Callithrix_jacchus
ENSIPUG00000012493	smg6	81	53.438	ENSCAFG00000019260	SMG6	83	55.547	Canis_familiaris
ENSIPUG00000012493	smg6	81	53.438	ENSCAFG00020009770	SMG6	83	55.547	Canis_lupus_dingo
ENSIPUG00000012493	smg6	75	55.485	ENSCHIG00000021998	SMG6	83	56.109	Capra_hircus
ENSIPUG00000012493	smg6	75	54.317	ENSTSYG00000003406	SMG6	100	60.721	Carlito_syrichta
ENSIPUG00000012493	smg6	69	54.460	ENSCAPG00000016197	SMG6	83	54.460	Cavia_aperea
ENSIPUG00000012493	smg6	76	54.160	ENSCPOG00000014878	SMG6	89	59.813	Cavia_porcellus
ENSIPUG00000012493	smg6	80	51.936	ENSCCAG00000035801	SMG6	89	52.686	Cebus_capucinus
ENSIPUG00000012493	smg6	75	54.659	ENSCATG00000031956	SMG6	83	55.346	Cercocebus_atys
ENSIPUG00000012493	smg6	75	55.064	ENSCLAG00000006748	SMG6	82	63.000	Chinchilla_lanigera
ENSIPUG00000012493	smg6	75	54.894	ENSCSAG00000013800	SMG6	83	55.582	Chlorocebus_sabaeus
ENSIPUG00000012493	smg6	87	55.000	ENSCPBG00000020369	SMG6	95	54.688	Chrysemys_picta_bellii
ENSIPUG00000012493	smg6	75	54.503	ENSCANG00000031764	SMG6	100	62.239	Colobus_angolensis_palliatus
ENSIPUG00000012493	smg6	75	50.118	ENSCGRG00000007782	Smg6	85	51.079	Cricetulus_griseus_crigri
ENSIPUG00000012493	smg6	100	53.535	ENSCSEG00000012757	smg6	100	53.988	Cynoglossus_semilaevis
ENSIPUG00000012493	smg6	100	51.144	ENSCVAG00000012789	smg6	100	52.538	Cyprinodon_variegatus
ENSIPUG00000012493	smg6	100	62.105	ENSDARG00000100481	smg6	100	62.786	Danio_rerio
ENSIPUG00000012493	smg6	88	54.798	ENSDNOG00000048283	SMG6	96	55.244	Dasypus_novemcinctus
ENSIPUG00000012493	smg6	90	46.487	ENSDORG00000016614	Smg6	97	62.179	Dipodomys_ordii
ENSIPUG00000012493	smg6	64	87.805	ENSETEG00000016790	SMG6	71	87.805	Echinops_telfairi
ENSIPUG00000012493	smg6	56	49.633	ENSEBUG00000005059	smg6	60	49.685	Eptatretus_burgeri
ENSIPUG00000012493	smg6	75	54.996	ENSEASG00005009318	SMG6	83	55.538	Equus_asinus_asinus
ENSIPUG00000012493	smg6	75	55.156	ENSECAG00000006519	SMG6	83	55.698	Equus_caballus
ENSIPUG00000012493	smg6	75	46.677	ENSEEUG00000003493	SMG6	84	46.619	Erinaceus_europaeus
ENSIPUG00000012493	smg6	91	60.250	ENSELUG00000005934	smg6	89	64.562	Esox_lucius
ENSIPUG00000012493	smg6	75	55.096	ENSFCAG00000028817	SMG6	83	55.360	Felis_catus
ENSIPUG00000012493	smg6	75	56.518	ENSFALG00000006538	SMG6	84	56.472	Ficedula_albicollis
ENSIPUG00000012493	smg6	80	53.055	ENSFDAG00000015106	SMG6	91	58.371	Fukomys_damarensis
ENSIPUG00000012493	smg6	100	53.060	ENSFHEG00000013282	smg6	100	53.243	Fundulus_heteroclitus
ENSIPUG00000012493	smg6	76	55.795	ENSGALG00000003108	SMG6	82	55.351	Gallus_gallus
ENSIPUG00000012493	smg6	100	52.816	ENSGAFG00000000379	smg6	100	53.164	Gambusia_affinis
ENSIPUG00000012493	smg6	75	62.319	ENSGACG00000020521	smg6	92	61.886	Gasterosteus_aculeatus
ENSIPUG00000012493	smg6	77	54.602	ENSGAGG00000025617	SMG6	86	54.290	Gopherus_agassizii
ENSIPUG00000012493	smg6	75	54.581	ENSGGOG00000017156	SMG6	83	55.267	Gorilla_gorilla
ENSIPUG00000012493	smg6	100	53.459	ENSHBUG00000021311	smg6	100	54.362	Haplochromis_burtoni
ENSIPUG00000012493	smg6	76	54.567	ENSHGLG00000012882	SMG6	82	63.000	Heterocephalus_glaber_female
ENSIPUG00000012493	smg6	75	55.288	ENSHGLG00100017815	SMG6	82	63.000	Heterocephalus_glaber_male
ENSIPUG00000012493	smg6	65	61.445	ENSHCOG00000008761	smg6	83	61.798	Hippocampus_comes
ENSIPUG00000012493	smg6	76	54.389	ENSSTOG00000028127	SMG6	91	58.636	Ictidomys_tridecemlineatus
ENSIPUG00000012493	smg6	59	50.200	ENSJJAG00000015367	Smg6	82	48.430	Jaculus_jaculus
ENSIPUG00000012493	smg6	100	53.580	ENSKMAG00000000279	smg6	100	53.388	Kryptolebias_marmoratus
ENSIPUG00000012493	smg6	100	53.801	ENSLBEG00000002184	smg6	100	54.094	Labrus_bergylta
ENSIPUG00000012493	smg6	67	63.960	ENSLOCG00000006448	smg6	99	56.267	Lepisosteus_oculatus
ENSIPUG00000012493	smg6	78	52.986	ENSLAFG00000001261	SMG6	87	53.497	Loxodonta_africana
ENSIPUG00000012493	smg6	75	54.894	ENSMFAG00000003394	SMG6	83	55.582	Macaca_fascicularis
ENSIPUG00000012493	smg6	75	54.659	ENSMMUG00000023161	SMG6	83	55.346	Macaca_mulatta
ENSIPUG00000012493	smg6	75	52.400	ENSMNEG00000044592	SMG6	83	52.923	Macaca_nemestrina
ENSIPUG00000012493	smg6	75	52.467	ENSMLEG00000029353	SMG6	84	53.145	Mandrillus_leucophaeus
ENSIPUG00000012493	smg6	100	52.760	ENSMAMG00000020119	smg6	100	53.154	Mastacembelus_armatus
ENSIPUG00000012493	smg6	100	53.215	ENSMZEG00005024736	smg6	100	54.335	Maylandia_zebra
ENSIPUG00000012493	smg6	53	53.687	ENSMGAG00000005401	-	78	53.049	Meleagris_gallopavo
ENSIPUG00000012493	smg6	88	54.467	ENSMICG00000012913	SMG6	96	54.996	Microcebus_murinus
ENSIPUG00000012493	smg6	100	53.203	ENSMMOG00000010883	smg6	100	53.598	Mola_mola
ENSIPUG00000012493	smg6	78	54.553	ENSMODG00000010622	SMG6	87	54.312	Monodelphis_domestica
ENSIPUG00000012493	smg6	100	53.400	ENSMALG00000001106	smg6	100	53.716	Monopterus_albus
ENSIPUG00000012493	smg6	75	55.369	MGP_CAROLIEiJ_G0016729	Smg6	98	67.806	Mus_caroli
ENSIPUG00000012493	smg6	75	55.404	ENSMUSG00000038290	Smg6	97	66.857	Mus_musculus
ENSIPUG00000012493	smg6	75	54.826	MGP_PahariEiJ_G0017866	Smg6	95	67.742	Mus_pahari
ENSIPUG00000012493	smg6	75	55.404	MGP_SPRETEiJ_G0017572	Smg6	97	66.857	Mus_spretus
ENSIPUG00000012493	smg6	76	54.710	ENSMPUG00000013046	SMG6	85	54.796	Mustela_putorius_furo
ENSIPUG00000012493	smg6	75	54.588	ENSMLUG00000005739	SMG6	83	55.118	Myotis_lucifugus
ENSIPUG00000012493	smg6	75	54.553	ENSNGAG00000007287	Smg6	91	59.545	Nannospalax_galili
ENSIPUG00000012493	smg6	98	52.648	ENSNBRG00000009511	smg6	99	56.070	Neolamprologus_brichardi
ENSIPUG00000012493	smg6	75	54.760	ENSNLEG00000017171	SMG6	100	61.860	Nomascus_leucogenys
ENSIPUG00000012493	smg6	75	55.214	ENSMEUG00000015804	SMG6	85	54.964	Notamacropus_eugenii
ENSIPUG00000012493	smg6	51	65.193	ENSOPRG00000000579	SMG6	87	51.912	Ochotona_princeps
ENSIPUG00000012493	smg6	80	47.548	ENSODEG00000008038	SMG6	89	61.493	Octodon_degus
ENSIPUG00000012493	smg6	92	62.709	ENSONIG00000005594	smg6	100	61.975	Oreochromis_niloticus
ENSIPUG00000012493	smg6	78	53.612	ENSOCUG00000013018	SMG6	87	53.858	Oryctolagus_cuniculus
ENSIPUG00000012493	smg6	100	51.170	ENSORLG00000003317	smg6	100	51.255	Oryzias_latipes
ENSIPUG00000012493	smg6	100	51.142	ENSORLG00020015343	smg6	100	51.639	Oryzias_latipes_hni
ENSIPUG00000012493	smg6	100	50.644	ENSORLG00015020454	smg6	100	51.405	Oryzias_latipes_hsok
ENSIPUG00000012493	smg6	76	60.556	ENSOMEG00000010838	smg6	100	52.375	Oryzias_melastigma
ENSIPUG00000012493	smg6	100	50.000	ENSOGAG00000004483	SMG6	100	50.234	Otolemur_garnettii
ENSIPUG00000012493	smg6	75	55.276	ENSOARG00000015076	SMG6	85	56.135	Ovis_aries
ENSIPUG00000012493	smg6	75	54.424	ENSPPAG00000043296	SMG6	83	55.110	Pan_paniscus
ENSIPUG00000012493	smg6	75	54.988	ENSPPRG00000014581	SMG6	83	55.449	Panthera_pardus
ENSIPUG00000012493	smg6	75	54.988	ENSPTIG00000008925	SMG6	100	61.290	Panthera_tigris_altaica
ENSIPUG00000012493	smg6	75	54.503	ENSPTRG00000008544	SMG6	100	61.860	Pan_troglodytes
ENSIPUG00000012493	smg6	75	54.816	ENSPANG00000024588	SMG6	83	55.503	Papio_anubis
ENSIPUG00000012493	smg6	68	53.156	ENSPSIG00000006660	SMG6	80	52.618	Pelodiscus_sinensis
ENSIPUG00000012493	smg6	87	70.000	ENSPMGG00000000844	smg6	95	70.000	Periophthalmus_magnuspinnatus
ENSIPUG00000012493	smg6	75	55.280	ENSPEMG00000020707	Smg6	91	60.829	Peromyscus_maniculatus_bairdii
ENSIPUG00000012493	smg6	100	53.580	ENSPFOG00000012035	smg6	97	60.821	Poecilia_formosa
ENSIPUG00000012493	smg6	100	53.433	ENSPLAG00000017660	smg6	100	54.017	Poecilia_latipinna
ENSIPUG00000012493	smg6	100	53.699	ENSPMEG00000000258	smg6	100	53.910	Poecilia_mexicana
ENSIPUG00000012493	smg6	100	53.603	ENSPREG00000010066	smg6	100	54.236	Poecilia_reticulata
ENSIPUG00000012493	smg6	75	51.097	ENSPPYG00000007790	SMG6	83	51.019	Pongo_abelii
ENSIPUG00000012493	smg6	75	52.720	ENSPCAG00000000552	SMG6	83	53.082	Procavia_capensis
ENSIPUG00000012493	smg6	88	54.241	ENSPCOG00000020925	SMG6	96	55.189	Propithecus_coquereli
ENSIPUG00000012493	smg6	75	51.738	ENSPVAG00000002159	SMG6	80	52.907	Pteropus_vampyrus
ENSIPUG00000012493	smg6	91	55.184	ENSPNYG00000024151	smg6	99	56.473	Pundamilia_nyererei
ENSIPUG00000012493	smg6	96	80.714	ENSPNAG00000015480	smg6	98	80.714	Pygocentrus_nattereri
ENSIPUG00000012493	smg6	75	54.438	ENSRNOG00000003041	Smg6	97	66.667	Rattus_norvegicus
ENSIPUG00000012493	smg6	75	54.659	ENSRBIG00000024746	SMG6	83	55.346	Rhinopithecus_bieti
ENSIPUG00000012493	smg6	75	54.659	ENSRROG00000030423	SMG6	100	62.239	Rhinopithecus_roxellana
ENSIPUG00000012493	smg6	75	54.510	ENSSBOG00000022518	SMG6	85	52.705	Saimiri_boliviensis_boliviensis
ENSIPUG00000012493	smg6	75	56.175	ENSSHAG00000010045	SMG6	83	55.847	Sarcophilus_harrisii
ENSIPUG00000012493	smg6	95	56.039	ENSSFOG00015005436	smg6	91	56.671	Scleropages_formosus
ENSIPUG00000012493	smg6	100	53.389	ENSSMAG00000019777	smg6	100	53.227	Scophthalmus_maximus
ENSIPUG00000012493	smg6	100	55.187	ENSSDUG00000016412	smg6	100	54.738	Seriola_dumerili
ENSIPUG00000012493	smg6	88	56.640	ENSSLDG00000020747	smg6	95	55.981	Seriola_lalandi_dorsalis
ENSIPUG00000012493	smg6	76	54.445	ENSSPUG00000007152	SMG6	84	53.895	Sphenodon_punctatus
ENSIPUG00000012493	smg6	100	54.955	ENSSPAG00000015633	smg6	100	55.496	Stegastes_partitus
ENSIPUG00000012493	smg6	78	53.571	ENSSSCG00000017826	SMG6	86	53.852	Sus_scrofa
ENSIPUG00000012493	smg6	76	55.751	ENSTGUG00000005836	SMG6	99	55.431	Taeniopygia_guttata
ENSIPUG00000012493	smg6	93	55.134	ENSTRUG00000000358	smg6	98	55.199	Takifugu_rubripes
ENSIPUG00000012493	smg6	80	59.665	ENSTNIG00000016164	smg6	88	59.894	Tetraodon_nigroviridis
ENSIPUG00000012493	smg6	75	51.575	ENSTBEG00000011424	SMG6	83	51.852	Tupaia_belangeri
ENSIPUG00000012493	smg6	67	58.211	ENSTTRG00000001175	SMG6	74	58.824	Tursiops_truncatus
ENSIPUG00000012493	smg6	76	54.988	ENSUAMG00000025152	SMG6	87	54.710	Ursus_americanus
ENSIPUG00000012493	smg6	76	54.831	ENSUMAG00000009306	SMG6	87	54.874	Ursus_maritimus
ENSIPUG00000012493	smg6	62	81.481	ENSVPAG00000000225	SMG6	70	81.481	Vicugna_pacos
ENSIPUG00000012493	smg6	81	53.677	ENSVVUG00000021727	SMG6	89	53.946	Vulpes_vulpes
ENSIPUG00000012493	smg6	66	55.842	ENSXETG00000023799	SMG6	88	49.808	Xenopus_tropicalis
ENSIPUG00000012493	smg6	98	53.680	ENSXCOG00000009867	smg6	99	53.538	Xiphophorus_couchianus
ENSIPUG00000012493	smg6	100	52.969	ENSXMAG00000010321	smg6	100	53.341	Xiphophorus_maculatus